mRNA_Ecto-sp13_S_contig1438.3373.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1438.3373.1
Unique NamemRNA_Ecto-sp13_S_contig1438.3373.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1438.3373.1 vs. uniprot
Match: D8LBA3_ECTSI (FTCD_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBA3_ECTSI)

HSP 1 Score: 259 bits (663), Expect = 1.130e-84
Identity = 131/137 (95.62%), Postives = 135/137 (98.54%), Query Frame = 1
Query:    1 VYVSEGRNNTLLDALAEAARTTAPGTAGLIRQFRDPQYHRTGFTIGGACPDAVARASVEVSRRAVRAIDLLEHEASHPRIGVVDHVSVHPLGGKGSQEIAQKAGLVIATALGKDVGLPVLLYGDLNNGKRLAEVRLS 411
            VYVSEGRN+TLLDALAEAARTTAPGTAGLIRQFRDPQYHRTGFTIGGACPDAVARASVEVSRRAVRAIDLLEHEA+HPRIGVVDHVSVHPLGG+GSQEIAQKAGL IATALGKDVGLPVLLYGDLNNG+RLAEVR S
Sbjct:   39 VYVSEGRNSTLLDALAEAARTTAPGTAGLIRQFRDPQYHRTGFTIGGACPDAVARASVEVSRRAVRAIDLLEHEAAHPRIGVVDHVSVHPLGGEGSQEIAQKAGLAIATALGKDVGLPVLLYGDLNNGRRLAEVRRS 175          
BLAST of mRNA_Ecto-sp13_S_contig1438.3373.1 vs. uniprot
Match: A0A4D9D4Y2_9STRA (FTCD_N domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4Y2_9STRA)

HSP 1 Score: 125 bits (313), Expect = 3.470e-32
Identity = 68/138 (49.28%), Postives = 91/138 (65.94%), Query Frame = 1
Query:    1 VYVSEGRNNTLLDALAEAARTTAPGTAGLIRQFRDPQYHRTGFTIGGACPDAVARASVEVSRRAVRAIDLLEH-EASHPRIGVVDHVSVHPLGGKGSQEIAQKAGLVIATALGKDVGLPVLLYGDLNNGKRLAEVRLS 411
            VYVSEGRN+ LLD L   ART++PG   L+++F D  YHR+ FT+GGA P+ V   ++ V   A   +D+ +H +A+HPR+GVVDHVS HPLG     E+A+KA   +   +G    +PVLLYG  NN K LA+VR S
Sbjct:   19 VYVSEGRNHALLDRLTHLARTSSPGLCALVQRFSDAVYHRSNFTLGGA-PEPVVEVALRVINEAFLHVDMTKHVDATHPRVGVVDHVSFHPLGNT-PLEVARKAACALGQRVGGKWPVPVLLYGSCNN-KSLADVRRS 153          
BLAST of mRNA_Ecto-sp13_S_contig1438.3373.1 vs. uniprot
Match: A8HWL3_CHLRE (Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8HWL3_CHLRE)

HSP 1 Score: 114 bits (285), Expect = 2.960e-28
Identity = 67/156 (42.95%), Postives = 92/156 (58.97%), Query Frame = 1
Query:    1 VYVSEGRNNTLLDALAEAARTTAPGTAGLIRQFRDPQYHRTGFTIGGACPDAVARASVEVSRRAVRAIDLLEHEASHPRIGVVDHVSVHPLGGKGSQEIAQKAGLVIATALGKDV---GLPVLLYGDLNNGKR-LAEVRLSQGHATVVSPMGGLEG 456
            VY+SEGR+  L+  L  AA+ T PG A L+  F+D  YHRTGFT+    PD +  A V +SR A++ +DL  H+ASHPR+GVVDH+++HPLGG          G+    A G++     LPV  YG  +  +R LA++R   G+    SP GG  G
Sbjct:    3 VYISEGRDKALIGKLEAAAQAT-PGVA-LVNVFQDEPYHRTGFTLVSGQPDRLTEAVVRLSRAALQLLDLRRHDASHPRLGVVDHIALHPLGGLAPAAATHSRGVATTVAGGQEEEVPALPVYFYGHAHPSRRGLADIRRKLGYFRR-SPEGGWRG 155          
BLAST of mRNA_Ecto-sp13_S_contig1438.3373.1 vs. uniprot
Match: A4S2F9_OSTLU (FTCD_N domain-containing protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S2F9_OSTLU)

HSP 1 Score: 109 bits (272), Expect = 6.550e-26
Identity = 63/145 (43.45%), Postives = 93/145 (64.14%), Query Frame = 1
Query:    1 VYVSEGRNNTLLDALAEAAR-TTAPGT-AGLIRQFRDPQYHRTGFTIGGACPDAVARASVEVSRRAVRAIDLLEHEASHPRIGVVDHVSVHPLGGK--GSQEIAQKAGLVIATALGKDVGLPVLLYGDL-NNGKRLAEVRLSQGH 420
            VYVSEGR   +LD +   AR  TAP     L+  FRD +Y+RTGFT+ G   D V RA+++V++ ++R +D+  H+A+HPR+GVVDHVS H L G+  G+ ++A+  G  + T     +G+PV LYGD  ++G  L E+R   G+
Sbjct:   16 VYVSEGRRTAVLDVIERVAREATAPRRPVALVNVFRDAEYNRTGFTLAGRDVDDVRRAALDVAQVSLREVDMRAHDATHPRVGVVDHVSCHALAGERAGAAKLAKSIGEGLGT-----LGVPVKLYGDAASDGIGLDEIRRRSGY 155          
BLAST of mRNA_Ecto-sp13_S_contig1438.3373.1 vs. uniprot
Match: A0A7S3XW83_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XW83_HETAK)

HSP 1 Score: 108 bits (270), Expect = 1.720e-25
Identity = 63/139 (45.32%), Postives = 85/139 (61.15%), Query Frame = 1
Query:    1 VYVSEGRNNTLLDALAEAARTTAPGT--AGLIRQFRDPQYHRTGFTIGGACPDAVARASVEVSRRAVRAIDLLEHEASHPRIGVVDHVSVHPLGGKGSQEIAQKAGLVIATALGKDVGLPVLLYGDLNNGKRLAEVRLS 411
            +YVSEGR+   ++ L E A      T    L+ +F DP Y+RT F   G    +V+R   EV+  A+ +++L EHEASHPRIGVVDH+SVHPLG   +   A++A   I    G + G+P+L YG LN GKRL+ VR S
Sbjct:   57 LYVSEGRDEQFINELHEMAHNKTGETFDCALVNKFSDPHYNRTSFCFAGHY-SSVSRIIKEVAEVAIESLNLEEHEASHPRIGVVDHISVHPLGE--TMVFAEEAAREIGAYFGTEKGIPILFYGSLN-GKRLSAVRRS 191          
BLAST of mRNA_Ecto-sp13_S_contig1438.3373.1 vs. uniprot
Match: A0A090N402_OSTTA (Formiminotransferas, N-and C-terminal subdomains n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090N402_OSTTA)

HSP 1 Score: 108 bits (269), Expect = 2.340e-25
Identity = 60/145 (41.38%), Postives = 89/145 (61.38%), Query Frame = 1
Query:    1 VYVSEGRNNTLLDALAEAARTTA-PGTAGLIRQFRDPQYHRTGFTIGGACPDAVARASVEVSRRAVRAIDLLEHEASHPRIGVVDHVSVHPLGGKGSQEIAQKAGLVIATALGK---DVGLPVLLYGDLNNGK-RLAEVRLSQGH 420
            VYVSEGR   +LDA+   AR  +      L+  F D +Y+RTGFT+ GA  D +A  +++++++++  ID   H+A+HPR+GVVDHVS H L G+      + AG  +A  +G+   D G+PV LYGD  + K  LAE+R   G+
Sbjct:   34 VYVSEGRRTVVLDAIERVARDASLKNRVALVNVFVDREYNRTGFTLAGAHTDGIANTALDIAKKSLELIDFSTHDATHPRLGVVDHVSCHELRGE------RDAGAALARNIGRGLGDQGVPVKLYGDAASDKVGLAEIRRRAGY 172          
BLAST of mRNA_Ecto-sp13_S_contig1438.3373.1 vs. uniprot
Match: A0A7S0PKG3_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0PKG3_9CHLO)

HSP 1 Score: 107 bits (267), Expect = 3.130e-25
Identity = 66/144 (45.83%), Postives = 88/144 (61.11%), Query Frame = 1
Query:    1 VYVSEGRNNTLLD---ALAEAARTTAPGTAGLIRQFRDPQYHRTGFTIGGACPDAVARASVEVSRRAVRAIDLLEHEASHPRIGVVDHVSVHPLGGKGSQEIAQKAGLVIATALGKDVGLPVLLYGDL-NNGKRLAEVRLSQGH 420
            VYVSEGRN  +LD   A+A  A TT P    L+  FRD +Y+RTGFT  G   + V R+++EV+  ++R +DL EH A+HPR+GVVDHVS H L   G +  A +    I   LG   G+PV LYGD  ++G  L E+R   G+
Sbjct:   13 VYVSEGRNAVVLDKIEAIARKASTTRP--VALVNIFRDVEYNRTGFTFAGRDANDVTRSALEVASASLRVVDLREHAATHPRVGVVDHVSCHALDA-GRRADAAELAREIGAGLGS-FGVPVKLYGDAASDGVGLDEIRRRSGY 152          
BLAST of mRNA_Ecto-sp13_S_contig1438.3373.1 vs. uniprot
Match: A0A8J9WP56_9CHLO (Probable formimidoyltransferase-cyclodeaminase n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WP56_9CHLO)

HSP 1 Score: 106 bits (265), Expect = 4.980e-25
Identity = 63/142 (44.37%), Postives = 88/142 (61.97%), Query Frame = 1
Query:    1 VYVSEGRNNTLLDALAEAARTTAPGTAGLIRQFRDPQYHRTGFTIGGACPDAVARASVEVSRRAVRAIDLLEHEASHPRIGVVDHVSVHPLGGKGSQEIAQKAGLVIATALGK-DVGLPVLLYGDLN-NGKRLAEVRLSQGH 420
            VY+SEG    LL+ L   A T   GTA L+  F D  Y+RTGFT+    P  +AR +V ++R A+ AIDL  H ASHPR+GVVDH+S HPLG   +   A +A  +I   LG+ ++ +PV LYG  + N + LA++R + G+
Sbjct:   15 VYISEGSKLALLEQLKGVASTDT-GTA-LVHTFIDKPYNRTGFTLASPGPQQLARTAVHLARAALAAIDLRLHSASHPRLGVVDHISCHPLGTGATLSSATEAARLIGAQLGEGELAVPVFLYGSAHKNQQSLADIRRACGY 154          
BLAST of mRNA_Ecto-sp13_S_contig1438.3373.1 vs. uniprot
Match: I0YZZ2_COCSC (Formiminotransferase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZZ2_COCSC)

HSP 1 Score: 102 bits (253), Expect = 2.840e-23
Identity = 59/142 (41.55%), Postives = 85/142 (59.86%), Query Frame = 1
Query:    1 VYVSEGRNNTLLDALAEAARTTAPGTAGLIRQFRDPQYHRTGFTIGGACPDAVARASVEVSRRAVRAIDLLEHEASHPRIGVVDHVSVHPLGGKGSQEIAQKAGLVIATALGK-DVGLPVLLYGDLNNGKR-LAEVRLSQGH 420
            VY+SEG  +TL+  L   A     G+A L+  F D  Y+RTGFT+    P  +A + V ++R A+  IDL  H ASHPR+GVVDH+S HPLG   +   A +    I T LG+ ++ +PV LYG   + +R LA++R + G+
Sbjct:   10 VYISEGLRSTLVQQLKVCADKCISGSA-LVHTFVDKPYNRTGFTLVSPAPHELAGSVVRLARAALETIDLRSHAASHPRLGVVDHISCHPLGRDAALTAAAETARSIGTQLGEGELAVPVFLYGSAGSQQRSLADLRRACGY 150          
BLAST of mRNA_Ecto-sp13_S_contig1438.3373.1 vs. uniprot
Match: A0A2K3DN18_CHLRE (FTCD_N domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DN18_CHLRE)

HSP 1 Score: 102 bits (253), Expect = 1.090e-22
Identity = 53/111 (47.75%), Postives = 70/111 (63.06%), Query Frame = 1
Query:    1 VYVSEGRNNTLLDALAEAARTTAPGTAGLIRQFRDPQYHRTGFTIGGACPDAVARASVEVSRRAVRAIDLLEHEASHPRIGVVDHVSVHPLGGKGSQEIAQKAGLVIATAL 333
            VY+SEGR+  L+  L  AA+ T PG A L+  F+D  YHRTGFT+    PD +  A V +SR A++ +DL  H+ASHPR+GVVDH+++HPLGG       Q  G   A  L
Sbjct:   18 VYISEGRDKALIGKLEAAAQAT-PGVA-LVNVFQDEPYHRTGFTLVSGQPDRLTEAVVRLSRAALQLLDLRRHDASHPRLGVVDHIALHPLGGLAPAAATQYGGSPAAAGL 126          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1438.3373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBA3_ECTSI1.130e-8495.62FTCD_N domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A4D9D4Y2_9STRA3.470e-3249.28FTCD_N domain-containing protein n=1 Tax=Nannochlo... [more]
A8HWL3_CHLRE2.960e-2842.95Predicted protein (Fragment) n=1 Tax=Chlamydomonas... [more]
A4S2F9_OSTLU6.550e-2643.45FTCD_N domain-containing protein n=1 Tax=Ostreococ... [more]
A0A7S3XW83_HETAK1.720e-2545.32Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A090N402_OSTTA2.340e-2541.38Formiminotransferas, N-and C-terminal subdomains n... [more]
A0A7S0PKG3_9CHLO3.130e-2545.83Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]
A0A8J9WP56_9CHLO4.980e-2544.37Probable formimidoyltransferase-cyclodeaminase n=1... [more]
I0YZZ2_COCSC2.840e-2341.55Formiminotransferase n=1 Tax=Coccomyxa subellipsoi... [more]
A0A2K3DN18_CHLRE1.090e-2247.75FTCD_N domain-containing protein n=1 Tax=Chlamydom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1438contigEcto-sp13_S_contig1438:505..966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score261.2
Seed ortholog evalue3.1e-67
Seed eggNOG ortholog2880.D8LBA3
Preferred nameFTCDNL1
Model size462
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005790,GO:0005793,GO:0005794,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006547,GO:0006548,GO:0006725,GO:0006807,GO:0006996,GO:0007010,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009987,GO:0012505,GO:0015631,GO:0016020,GO:0016043,GO:0016054,GO:0016740,GO:0016741,GO:0016742,GO:0016829,GO:0016840,GO:0016841,GO:0019439,GO:0019752,GO:0030407,GO:0030409,GO:0030412,GO:0030868,GO:0031090,GO:0031984,GO:0034641,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0046483,GO:0046700,GO:0052803,GO:0052805,GO:0071704,GO:0071840,GO:0071944,GO:0097425,GO:0098588,GO:0098791,GO:0098827,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606
Exons1
EggNOG free text desc.formimidoyltetrahydrofolate cyclodeaminase activity
EggNOG OGs2QS19@2759,COG3404@1
Cds size462
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462767.658623-CDS-Ecto-sp13_S_contig1438:504..9661681462767.658623-CDS-Ecto-sp13_S_contig1438:504..966Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1438 505..966 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1438.3373.1prot_Ecto-sp13_S_contig1438.3373.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1438 505..966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1438.3373.1

>prot_Ecto-sp13_S_contig1438.3373.1 ID=prot_Ecto-sp13_S_contig1438.3373.1|Name=mRNA_Ecto-sp13_S_contig1438.3373.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=154bp
VYVSEGRNNTLLDALAEAARTTAPGTAGLIRQFRDPQYHRTGFTIGGACP
DAVARASVEVSRRAVRAIDLLEHEASHPRIGVVDHVSVHPLGGKGSQEIA
QKAGLVIATALGKDVGLPVLLYGDLNNGKRLAEVRLSQGHATVVSPMGGL
EGS*
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mRNA from alignment at Ecto-sp13_S_contig1438:505..966-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1438.3373.1 ID=mRNA_Ecto-sp13_S_contig1438.3373.1|Name=mRNA_Ecto-sp13_S_contig1438.3373.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=462bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1438:505..966- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTATGTGTCAGAGGGGAGAAACAATACGCTGTTGGATGCTCTGGCCGA GGCAGCAAGGACGACTGCTCCCGGTACCGCTGGCCTGATTAGGCAGTTCA GAGATCCCCAGTACCACCGCACGGGTTTCACGATAGGCGGCGCGTGTCCC GATGCCGTGGCGAGAGCTTCGGTAGAGGTTAGCCGTCGCGCCGTCCGAGC AATCGATCTTCTCGAGCACGAGGCATCCCACCCCCGAATCGGGGTGGTTG ATCACGTGTCAGTGCACCCACTGGGGGGGAAAGGCAGCCAGGAGATTGCT CAGAAGGCAGGCTTGGTCATTGCGACGGCACTGGGCAAGGATGTGGGCCT ACCCGTCTTGCTGTACGGCGACCTAAACAACGGCAAACGGTTAGCGGAGG TGAGATTGAGCCAAGGACACGCGACGGTTGTTTCTCCGATGGGAGGGCTG GAGGGCTCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1438:505..966-

>mRNA_Ecto-sp13_S_contig1438.3373.1 ID=mRNA_Ecto-sp13_S_contig1438.3373.1|Name=mRNA_Ecto-sp13_S_contig1438.3373.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=462bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1438:505..966- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTATGTGTCAGAGGGGAGAAACAATACGCTGTTGGATGCTCTGGCCGA
GGCAGCAAGGACGACTGCTCCCGGTACCGCTGGCCTGATTAGGCAGTTCA
GAGATCCCCAGTACCACCGCACGGGTTTCACGATAGGCGGCGCGTGTCCC
GATGCCGTGGCGAGAGCTTCGGTAGAGGTTAGCCGTCGCGCCGTCCGAGC
AATCGATCTTCTCGAGCACGAGGCATCCCACCCCCGAATCGGGGTGGTTG
ATCACGTGTCAGTGCACCCACTGGGGGGGAAAGGCAGCCAGGAGATTGCT
CAGAAGGCAGGCTTGGTCATTGCGACGGCACTGGGCAAGGATGTGGGCCT
ACCCGTCTTGCTGTACGGCGACCTAAACAACGGCAAACGGTTAGCGGAGG
TGAGATTGAGCCAAGGACACGCGACGGTTGTTTCTCCGATGGGAGGGCTG
GAGGGCTCGTAG
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