mRNA_Ecto-sp13_S_contig14333.3354.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14333.3354.1
Unique NamemRNA_Ecto-sp13_S_contig14333.3354.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14333.3354.1 vs. uniprot
Match: D8LU08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU08_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 2.160e-26
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 1 
Query:    1 RCVKSGSQCTYSRRRWHLPQALQQERQPERPYRDGTHAREAPLHSTPPGVFVSSGMLPMKRVRLRASPATGLVGLQENAFLT 246
            RCVKS S C +S+RRWHLP+  QQE +P+R + DGTH RE  L +TPPG F +SG+LPMKR RL ASPA GLVG+QEN FLT
Sbjct:   47 RCVKSRSPCKFSKRRWHLPKPPQQEGRPQRLHGDGTHGREPLLKATPPGEFATSGLLPMKRFRLSASPAIGLVGMQENTFLT 128
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BLAST of mRNA_Ecto-sp13_S_contig14333.3354.1 vs. uniprot
Match: D8LU13_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU13_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.190e-23
Identity = 50/82 (60.98%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:    1 RCVKSGSQCTYSRRRWHLPQALQQERQPERPYRDGTHAREAPLHSTPPGVFVSSGMLPMKRVRLRASPATGLVGLQENAFLT 246
            RCV++GS CTYS+RRWHLPQ   Q+ QP    RD TH +E  L S+PP   VSS  LP+KR+RL ASPA GLVG+QE+AFL+
Sbjct:   45 RCVRTGSNCTYSKRRWHLPQPHGQQHQPRPSRRDRTHRKEVLLQSSPPEALVSSARLPLKRLRLSASPAVGLVGMQESAFLS 126
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BLAST of mRNA_Ecto-sp13_S_contig14333.3354.1 vs. uniprot
Match: A0A6H5JYW4_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW4_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 5.020e-23
Identity = 52/82 (63.41%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:    1 RCVKSGSQCTYSRRRWHLPQALQQERQPERPYRDGTHAREAPLHSTPPGVFVSSGMLPMKRVRLRASPATGLVGLQENAFLT 246
            RCV SG QC Y  RRWHL +  QQ+ Q +RP RDG H RE  L S  PG  V+ GMLP+KR RL ASPATGLVG+QENAFL+
Sbjct:   51 RCVGSGGQCAYIMRRWHLLKPHQQQHQSQRPDRDGAHGREV-LQSAQPGALVTCGMLPLKRFRLSASPATGLVGMQENAFLS 131
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BLAST of mRNA_Ecto-sp13_S_contig14333.3354.1 vs. uniprot
Match: D8LU16_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU16_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 7.710e-22
Identity = 53/84 (63.10%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:    1 RCVKSGSQCTYSRRRWHLPQALQQE--RQPERPYRDGTHAREAPLHSTPPGVFVSSGMLPMKRVRLRASPATGLVGLQENAFLT 246
            RCV+SGSQCTYS+RR  L Q  +Q   RQP+R   DG H  E PLHSTPPG   +SG LP+ R  L ASPATGLVG+QENAFL+
Sbjct:   50 RCVRSGSQCTYSKRRRRLLQTHKQTHLRQPDR---DGAHGGEVPLHSTPPGALATSGRLPLARFGLSASPATGLVGMQENAFLS 130
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BLAST of mRNA_Ecto-sp13_S_contig14333.3354.1 vs. uniprot
Match: A0A6H5JBJ1_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ1_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 5.840e-14
Identity = 42/82 (51.22%), Postives = 53/82 (64.63%), Query Frame = 1 
Query:    1 RCVKSGSQCTYSRRRWHLPQALQQERQPERPYRDGTHAREAPLHSTPPGVFVSSGMLPMKRVRLRASPATGLVGLQENAFLT 246
            RC++SG QCTYS+R+ H PQ   Q ++  RP           L  +  G   +SGMLP+KR RL ASPATGLVG+QENAFL+
Sbjct:   40 RCLRSGVQCTYSKRKPHQPQTQHQHQR--RPRGPACMPSTELLRHSSSGALQASGMLPLKRFRLSASPATGLVGMQENAFLS 119
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BLAST of mRNA_Ecto-sp13_S_contig14333.3354.1 vs. uniprot
Match: A0A6H5JMP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP5_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 6.910e-13
Identity = 46/85 (54.12%), Postives = 56/85 (65.88%), Query Frame = 1 
Query:    1 RCVKSGSQCTYSRRRWH---LPQALQQERQPERPYRDGTHAREAPLHSTPPGVFVSSGMLPMKRVRLRASPATGLVGLQENAFLT 246
            RCV+SG Q TYS R WH     + +Q+ R  + P R G +A+E  LHST  G   +SGMLP KR  L ASPATGLVG+QEN FL+
Sbjct:   18 RCVQSGDQYTYSER-WHQYDYRRHMQRHRS-QGPDRYGVNAKEVLLHSTT-GALKTSGMLPFKRCGLSASPATGLVGMQENVFLS 99
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BLAST of mRNA_Ecto-sp13_S_contig14333.3354.1 vs. uniprot
Match: A0A6H5K8E7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8E7_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.320e-12
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:    1 RCVKSGSQCTYSRRRWHLPQ-ALQQERQPERPYRDGTHAREAPLHSTPPGVFVSSGMLPMKRVRLRASPATGLVGLQENAFLT 246
            RC+++G +CTYS+R+ H PQ   Q +R+P  P    T     P  S   G  +  GMLP+KR++L ASPATGLVG+QENAFL+
Sbjct:   40 RCLRAGVRCTYSKRKPHQPQLGRQHQRRPRGPAGVQTADMFRPSAS---GTLLPGGMLPLKRLKLSASPATGLVGMQENAFLS 119
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BLAST of mRNA_Ecto-sp13_S_contig14333.3354.1 vs. uniprot
Match: D8LU17_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU17_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 4.540e-12
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:    1 RCVKSGSQCTYSRRRWHLPQALQQERQPERPYRDGTHAREAPLHSTPP--GVFVSSGMLPMKRVRLRASPATGLVGLQENAFL 243
            RC+K+G++CTY++R+WH       +RQP    +  ++   A +HST    G   + GML +KR RL ASPATGLVG+QENAFL
Sbjct:  114 RCLKAGARCTYTKRKWH-------QRQPGHRQQHQSNGPAA-MHSTDSSSGTLPAGGMLALKRFRLGASPATGLVGMQENAFL 188
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14333.3354.1 vs. uniprot
Match: D8LU21_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU21_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 9.200e-10
Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:    1 RCVKSGSQCTYSRRRWHLPQ-ALQQERQPERPYRDGTHAREAPLHSTPPGVFVSSGMLPMKRVRLRASPATGLVGLQENAFLT 246
            RC+ +G +CTY +R+ H PQ   Q +R+P  P   G    +  L  +  G  ++  MLP+KR++L ASPATGLVG+QEN FL+
Sbjct:   40 RCLGAGVRCTYRKRKPHQPQPGRQHQRRPRGPA--GMQTADL-LRLSASGTLLACRMLPLKRLKLSASPATGLVGMQENTFLS 119
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14333.3354.1 vs. uniprot
Match: D8LU27_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU27_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 2.240e-9
Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:    1 RCVKSGSQCTYSRRRWHLPQALQQERQPERPYRDGTHAREAPLHSTPPGVFVSSGMLPMKRVRLRASPATGLVGLQENAFLT 246
            RC+ +G QC Y +R+   PQ    +R+ +     GT + E   HS   G F++   LP+KR RL ASPATGLVG+QENAFL+
Sbjct:   39 RCIGAGVQCIYIKRKSTHPQY---QRKQQLRGLAGTQSTELQRHSLS-GAFLARDTLPLKRCRLSASPATGLVGMQENAFLS 116
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14333.3354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LU08_ECTSI2.160e-2665.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU13_ECTSI1.190e-2360.98Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JYW4_9PHAE5.020e-2363.41Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU16_ECTSI7.710e-2263.10Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JBJ1_9PHAE5.840e-1451.22Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JMP5_9PHAE6.910e-1354.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8E7_9PHAE1.320e-1249.40Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU17_ECTSI4.540e-1248.19Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU21_ECTSI9.200e-1044.58Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU27_ECTSI2.240e-946.34Zn(2)-C6 fungal-type domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14333contigEcto-sp13_S_contig14333:3671..4136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size250
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_000760.2
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462766.1890483-CDS-Ecto-sp13_S_contig14333:3670..38521681462766.1890483-CDS-Ecto-sp13_S_contig14333:3670..3852Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14333 3671..3852 +
1681462766.1990168-CDS-Ecto-sp13_S_contig14333:4070..41341681462766.1990168-CDS-Ecto-sp13_S_contig14333:4070..4134Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14333 4071..4134 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14333.3354.1prot_Ecto-sp13_S_contig14333.3354.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14333 3671..4134 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14333.3354.1

>prot_Ecto-sp13_S_contig14333.3354.1 ID=prot_Ecto-sp13_S_contig14333.3354.1|Name=mRNA_Ecto-sp13_S_contig14333.3354.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
RCVKSGSQCTYSRRRWHLPQALQQERQPERPYRDGTHAREAPLHSTPPGV
FVSSGMLPMKRVRLRASPATGLVGLQENAFLT
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mRNA from alignment at Ecto-sp13_S_contig14333:3671..4136+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14333.3354.1 ID=mRNA_Ecto-sp13_S_contig14333.3354.1|Name=mRNA_Ecto-sp13_S_contig14333.3354.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=466bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14333:3671..4136+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCTGTGTGAAGTCAGGCAGCCAGTGCACCTACAGCAGACGGCGGTGGCA
TCTCCCTCAAGCACTCCAGCAGGAACGACAGCCTGAGCGACCTTATCGTG
ATGGCACGCACGCCAGAGAGGCCCCGCTCCATTCCACACCACCCGGCGTA
TTCGTATCATCTGGCATGTTGCCAATGAAGAGGTACTACTAACTGGATTC
AAACGGTGAACTGGTACAGTCTATCACGTCGATGCTTACAAACCTAACAC
TCTCACGGCCGCGCAACTGTTGCGCTACGCGACTCGCGACATCAGCAGGA
CACGAAAACGCCCGACTGTTGGATGAAATACTGGACAAGTCACGCCGCCA
GCGTTGACGGAGAGCGCTCGCTTCGTTCCATATCCTGTTGCTACGTACAG
GGTCAGGTTGAGGGCATCTCCGGCGACTGGTCTCGTGGGATTGCAGGAGA
ACGCATTCCTGACCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14333:3671..4136+

>mRNA_Ecto-sp13_S_contig14333.3354.1 ID=mRNA_Ecto-sp13_S_contig14333.3354.1|Name=mRNA_Ecto-sp13_S_contig14333.3354.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14333:3671..4136+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCTGTGTGAAGTCAGGCAGCCAGTGCACCTACAGCAGACGGCGGTGGCA
TCTCCCTCAAGCACTCCAGCAGGAACGACAGCCTGAGCGACCTTATCGTG
ATGGCACGCACGCCAGAGAGGCCCCGCTCCATTCCACACCACCCGGCGTA
TTCGTATCATCTGGCATGTTGCCAATGAAGAGGGTCAGGTTGAGGGCATC
TCCGGCGACTGGTCTCGTGGGATTGCAGGAGAACGCATTCCTGACC
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