mRNA_Ecto-sp13_S_contig14262.3306.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14262.3306.1
Unique NamemRNA_Ecto-sp13_S_contig14262.3306.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14262.3306.1 vs. uniprot
Match: D8LD61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD61_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 3.140e-36
Identity = 68/72 (94.44%), Postives = 72/72 (100.00%), Query Frame = 1 
Query:    1 GGIRKMVCALALQKRYLPLAELEPQLWFKAFPASAYQDMVAAQEELLRALTLLTKSAIAVSQDRSTEWRREV 216
            GGIRKMVCALALQKRYLPLAELEPQLW++AFPASAYQDMVAAQEELLRALTLLTKSAIAVS+DRSTEWRRE+
Sbjct: 1012 GGIRKMVCALALQKRYLPLAELEPQLWYEAFPASAYQDMVAAQEELLRALTLLTKSAIAVSEDRSTEWRREL 1083
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14262.3306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD61_ECTSI3.140e-3694.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14262contigEcto-sp13_S_contig14262:776..1553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size250
Hectar predicted targeting categoryother localisation
Exons2
Cds size216
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462762.4615128-UTR-Ecto-sp13_S_contig14262:775..7901681462762.4615128-UTR-Ecto-sp13_S_contig14262:775..790Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14262 776..790 +
1681462762.4873283-UTR-Ecto-sp13_S_contig14262:1534..15531681462762.4873283-UTR-Ecto-sp13_S_contig14262:1534..1553Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14262 1535..1553 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462762.470961-CDS-Ecto-sp13_S_contig14262:790..9101681462762.470961-CDS-Ecto-sp13_S_contig14262:790..910Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14262 791..910 +
1681462762.4796393-CDS-Ecto-sp13_S_contig14262:1438..15341681462762.4796393-CDS-Ecto-sp13_S_contig14262:1438..1534Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14262 1439..1534 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14262.3306.1prot_Ecto-sp13_S_contig14262.3306.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14262 791..1534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14262.3306.1

>prot_Ecto-sp13_S_contig14262.3306.1 ID=prot_Ecto-sp13_S_contig14262.3306.1|Name=mRNA_Ecto-sp13_S_contig14262.3306.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
MVCALALQKRYLPLAELEPQLWFKAFPASAYQDMVAAQEELLRALTLLTK
SAIAVSQDRSTEWRREVRGWW*
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mRNA from alignment at Ecto-sp13_S_contig14262:776..1553+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14262.3306.1 ID=mRNA_Ecto-sp13_S_contig14262.3306.1|Name=mRNA_Ecto-sp13_S_contig14262.3306.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=778bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14262:776..1553+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGCATCAGGAAGATGGTGTGCGCCCTCGCGCTCCAGAAGCGCTACCT
CCCGCTGGCTGAGCTCGAGCCGCAGCTGTGGTTCAAGGCCTTCCCCGCTT
CGGCTTACCAGGACATGGTGGCGGCACAAGAGGAGGTGAACAGCGAACAT
TTCTTCCCGCGGTCGCAAGCCATTACATGTAGACGAAAAGGACTCAAACA
CCACCCACCGATCGAGTTTATTTTCACACGCCGCGTTCCATCCCTACTCG
TGTTAGTTAGTGCCAGCGCCGTTTCCCGTAAGCGGCAAGGACCGAAGAGC
TTACACGGTGACGACCACAGCGTCATAAGCTGGGTGCGTTTCTAGTTTTC
ATCAATAAGATTCAGGCAAGCGACAAATACATACCCCCCCCCCCCCCCCC
CCCCCCGTCCTCTCCCCCCTCCCATAACCCACCCCGCACCCCCTCCTGCC
TCNNNNNNNNNNCACGGTATAAGGTGTGGGTGTTTTTTTGTTTTCAACAA
TAGTTCGGCCGAACGAAAAAAAACAACCCCCCCCCCCCCCCCCCACCACC
TGTTCTCTCTTCGACGACCCCCCCTCCCGGTTTCGATTCTCTTCGATGGT
CCCTCCTCCCCCCCCCCTCCCCCCTTCCCCCTCTGTGTCTCCGAACGAAA
TTTCTCCTCCTAGCTGTTGCGAGCGTTGACCTTGCTGACGAAGTCCGCCA
TCGCCGTGTCTCAGGACCGATCCACGGAATGGCGCCGAGAGGTCAGAGGA
TGGTGGTAAAACGCTGATTGACTATTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14262:776..1553+

>mRNA_Ecto-sp13_S_contig14262.3306.1 ID=mRNA_Ecto-sp13_S_contig14262.3306.1|Name=mRNA_Ecto-sp13_S_contig14262.3306.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14262:776..1553+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGTGCGCCCTCGCGCTCCAGAAGCGCTACCTCCCGCTGGCTGAGCT
CGAGCCGCAGCTGTGGTTCAAGGCCTTCCCCGCTTCGGCTTACCAGGACA
TGGTGGCGGCACAAGAGGAGCTGTTGCGAGCGTTGACCTTGCTGACGAAG
TCCGCCATCGCCGTGTCTCAGGACCGATCCACGGAATGGCGCCGAGAGGT
CAGAGGATGGTGGTAA
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