mRNA_Ecto-sp13_S_contig14223.3279.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14223.3279.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 505 bits (1300), Expect = 6.340e-172 Identity = 250/256 (97.66%), Postives = 253/256 (98.83%), Query Frame = 1
Query: 124 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIIMPEPMSGESNSGYKVRVMDVSDEDGMDCSDAFYLMASEDAPDAG-ESGYSLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEDLYGCSGTFTIMGGDDESMSYDF 888
MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGE+GCPDNEGDYDI+MPEPMSGESNSGYKVRVMDVSDED MDCSDAFYLMASEDAPDAG ESGY LTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDE+LYGCSGTFTIMGGDDESMSYDF
Sbjct: 1 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGDDESMSYDF 256
BLAST of mRNA_Ecto-sp13_S_contig14223.3279.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 390 bits (1001), Expect = 7.140e-127 Identity = 198/267 (74.16%), Postives = 214/267 (80.15%), Query Frame = 1
Query: 124 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADS-GRFEIDLYHCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIIMPEPMSGESNSGYKVRVMDVSDEDGMDCSDAFYLMASEDAPDAG-ESGYSLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEDLYGCSGTFTIMGGDDE----------SMSYDF 888
M RTGFVALAC MLGAANAL+V TPS L V+ADRTYTVEWTG S RFEIDLY+CGSMCMED CGDWVTALCPYGEDGCPDNEGDYDI+MPEPM G S SGYKVRV D+ DE+ DCSD FYL+AS +AP G E G +L VTSPA GD A EYTVEFDYDNGVGS VDRF+IDLY ADG+GDCGTYV SICDKP+IGCKDSMGDYDVEIP DT+AG+YKIRV RFED+ LY CSGTFTI GDD S+SY F
Sbjct: 1 MTRTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGDDSDXXXXXEDAFSLSYRF 267
BLAST of mRNA_Ecto-sp13_S_contig14223.3279.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 381 bits (979), Expect = 9.970e-124 Identity = 190/257 (73.93%), Postives = 211/257 (82.10%), Query Frame = 1
Query: 124 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSG-RFEIDLYHCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIIMPEPMSGESNSGYKVRVMDVSDEDGMDCSDAFYLMASEDAPDAGESGYS-LTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEDLYGCSGTFTIMGGDDESMSYDF 888
M RTGFVALAC MLG A+ALEVVTP+A +VV+ R YTVEW+G S RFEIDLY+C SMCMED CG+WVTALCPYGEDGCPDNEGDYDI+MPEPMSG S SGYKVRV DV DED DCSD FYLMA DAP A ++G +TVTSP+ GDSAEAGEEYTVEFDYDNG+GS V RF+IDLY A G GDCGT++ ++CDKP+IGCKDSMGDYDVEIP D EAG Y IRVG FEDE +YGCS F I+G DD SMSY F
Sbjct: 2 MVRTGFVALACGMLGVASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADDSSMSYRF 258
BLAST of mRNA_Ecto-sp13_S_contig14223.3279.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 358 bits (919), Expect = 1.560e-114 Identity = 177/238 (74.37%), Postives = 198/238 (83.19%), Query Frame = 1
Query: 160 MLGAANALEVVTPSADLIVVADRTYTVEWTGADSG-RFEIDLYHCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIIMPEPMSGESNSGYKVRVMDVSDEDGMDCSDAFYLMASEDAPDAGESGYS-LTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEDLYGCSGTFTIMGGDD 867
MLGAA+ALEVVTP+ IVVA R YTVEWTG S R+EIDLY+CGSMCMED CGDWVTALCPYGEDGCPDNEGDYDI+MPEPMSG S SGYKVRV DV D+D DCSD FYLMA +AP AG++G +TVTSP+ GDSAEAGEEYTVEFDYDNG+GS V RF+IDLY A G GDCGT++ ++CDKP+IGCKDSMGDYDVEIP D EAG Y IRVG FED+ +YGCS F I+G DD
Sbjct: 1 MLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADD 238
BLAST of mRNA_Ecto-sp13_S_contig14223.3279.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 354 bits (908), Expect = 3.010e-113 Identity = 178/255 (69.80%), Postives = 208/255 (81.57%), Query Frame = 1
Query: 124 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIIMPEPMSGESNSGYKVRVMDVSDEDGMDCSDAFYLMASEDAPDAGESGYSLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEDLYGCSGTFTIMGGDDESMSYDF 888
MART F ALA MLGAANALEVV+P+A +VVAD YTVEWTGA SGR++IDLY+CGS+CMED CGDWVTALCPYG+DGCPD +GDYD++MPEPM G S SGYKV V D SDE CS F L+AS +APDA + G ++VTSP++GD+A AG EYTVEFDYDNG+GS V+RF+IDLY + G GDCGTYVT+ICDKPSIGCKDS GDYDV IP+ TE+G Y IRVG FED+D+YGCS +F I+GG ESMS F
Sbjct: 1 MARTAFAALAFGMLGAANALEVVSPAAGDMVVADSAYTVEWTGATSGRYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDMGAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGG--ESMSVRF 252
BLAST of mRNA_Ecto-sp13_S_contig14223.3279.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 351 bits (900), Expect = 4.980e-112 Identity = 174/255 (68.24%), Postives = 202/255 (79.22%), Query Frame = 1
Query: 124 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIIMPEPMSGESNSGYKVRVMDVSDEDGMDCSDAFYLMASEDAPDAGESGYSLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEDLYGCSGTFTIMGGDDESMSYDF 888
MART F A+A ML AANALEVV+P + V+ADR YTVEWTG +GRFEIDLY+C S CM+D CGDWVTALCPYG DGCPD+ GDYDIIMPEPMSG S SGYKV V + DE M CSD F L+ASEDAP+AGE GYSLTVTSP++GD+A AGE YTVE+DY+NG GS DRF++DLY+ G GDCGTYVT++CD+PSIGC DS GDYDVEIP+DT AG Y IRVG F+DE +Y CS TF + DD ++S F
Sbjct: 1 MARTAFAAVAFGMLSAANALEVVSPDGGISVLADRAYTVEWTGTTTGRFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEMGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSDDMTISMRF 254
BLAST of mRNA_Ecto-sp13_S_contig14223.3279.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 336 bits (862), Expect = 2.160e-106 Identity = 169/245 (68.98%), Postives = 194/245 (79.18%), Query Frame = 1
Query: 124 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIIMPEPMSGESNSGYKVRVMDVSDEDGMDCSDAFYLMASEDAPDAGESGYSLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYM-ADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEDLYGCSGTFTIM 855
MART F ALA MLGAANALEVV+P+A + V+ADRTYTVEWTG RFEIDLY+CGS CMED CGDWVTALCPYG DGCPD +GDYDI+MPEPM+G S SGYKV V D +DE M CS F L+AS DAP AGE GYSLTVTSP++GD+A AG YTVE+DY+NG+GS DRF+IDLY G GDCGTYV ++CDKPSIGC DS GDYDVEIP+DT AG Y +RVG F D+ ++ CS F I+
Sbjct: 1 MARTAFAALAFGMLGAANALEVVSPAAGISVIADRTYTVEWTGTSDSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTS-SGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEVGYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIV 244
BLAST of mRNA_Ecto-sp13_S_contig14223.3279.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 324 bits (831), Expect = 5.710e-102 Identity = 163/207 (78.74%), Postives = 175/207 (84.54%), Query Frame = 1
Query: 124 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADS-GRFEIDLYHCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIIMPEPMSGESNSGYKVRVMDVSDEDGMDCSDAFYLMASEDAPDAG-ESGYSLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDS 738
MARTGFVALAC MLGAANAL+V TPS L V+ADRTYTVEWTG S RFEIDLY+CGSMCMED CGDWVTALCPYGEDGCPDNEGDYDI+MPEPMSG S SGYKVRV D+ DE+ DCSD FYL+AS +AP G E G +L VTSPA GD A EYTVEFDYDNGVGS+VDRF+IDLY ADGDGDCGTYV SICDKP+IGCKDS
Sbjct: 2 MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 208
BLAST of mRNA_Ecto-sp13_S_contig14223.3279.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE) HSP 1 Score: 295 bits (754), Expect = 1.780e-90 Identity = 155/255 (60.78%), Postives = 178/255 (69.80%), Query Frame = 1
Query: 124 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIIMPEPMSGESNSGYKVRVMDVSDEDGMDCSDAFYLMASEDAPDAGESGYSLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEDLYGCSGTFTIMGGDDESMSYDF 888
MART F ALA MLGA NALEV +P+A ++VA + TVEWTG SGRF+IDLY+CGS+CMED CGDWVTALCPYG+DGCPD +GDYD++MPEPM G S SGYKV V D SDE M CS F L+AS FD+DNG GS V+RFSIDLYM+ G GDCGTYVTSICDK SIGCKDS GDYDV IP+DTE+G Y IRVG FED D++GCS +F I+GG+ SMS F
Sbjct: 1 MARTAFAALAFGMLGAVNALEVTSPAAGDMIVAASSTTVEWTGTSSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDMGCSGEFTLVASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEIIGGE-SSMSVRF 253
BLAST of mRNA_Ecto-sp13_S_contig14223.3279.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE) HSP 1 Score: 263 bits (672), Expect = 2.390e-75 Identity = 131/187 (70.05%), Postives = 147/187 (78.61%), Query Frame = 1
Query: 304 MEDSCGDWVTALCPYGEDGCPDNEGDYDIIMPEPMSGESNSGYKVRVMDVSDEDGMDCSDAFYLMASEDAPDAG--ESGYSLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEDLYGCSGTFTIMG 858
+ED CG+WVTALCPYG +GCPDNEGDYDI+MPEPMSG S SGYKVRV DV DCSD FYLMAS +AP G ++ Y L VTSP+ GD A+AG EYTVEFDYDNGVGS+VDRF IDLY G GDCGT+V ++CDK +IGCKDSMGDYDVEIP G Y IRVGRFED+ LYGCSG F I+G
Sbjct: 12 VEDECGEWVTALCPYGSEGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPY-LMVTSPSAGDKAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDALYGCSGEFEIVG 197 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14223.3279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14223.3279.1 >prot_Ecto-sp13_S_contig14223.3279.1 ID=prot_Ecto-sp13_S_contig14223.3279.1|Name=mRNA_Ecto-sp13_S_contig14223.3279.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=256bp MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSGRFEback to top mRNA from alignment at Ecto-sp13_S_contig14223:265..4256- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14223.3279.1 ID=mRNA_Ecto-sp13_S_contig14223.3279.1|Name=mRNA_Ecto-sp13_S_contig14223.3279.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3992bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14223:265..4256- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14223:265..4256- >mRNA_Ecto-sp13_S_contig14223.3279.1 ID=mRNA_Ecto-sp13_S_contig14223.3279.1|Name=mRNA_Ecto-sp13_S_contig14223.3279.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=768bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14223:265..4256- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |