mRNA_Ecto-sp13_S_contig14223.3279.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14223.3279.1
Unique NamemRNA_Ecto-sp13_S_contig14223.3279.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14223.3279.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 505 bits (1300), Expect = 6.340e-172
Identity = 250/256 (97.66%), Postives = 253/256 (98.83%), Query Frame = 1
Query:  124 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIIMPEPMSGESNSGYKVRVMDVSDEDGMDCSDAFYLMASEDAPDAG-ESGYSLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEDLYGCSGTFTIMGGDDESMSYDF 888
            MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGE+GCPDNEGDYDI+MPEPMSGESNSGYKVRVMDVSDED MDCSDAFYLMASEDAPDAG ESGY LTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDE+LYGCSGTFTIMGGDDESMSYDF
Sbjct:    1 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGDDESMSYDF 256          
BLAST of mRNA_Ecto-sp13_S_contig14223.3279.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 390 bits (1001), Expect = 7.140e-127
Identity = 198/267 (74.16%), Postives = 214/267 (80.15%), Query Frame = 1
Query:  124 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADS-GRFEIDLYHCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIIMPEPMSGESNSGYKVRVMDVSDEDGMDCSDAFYLMASEDAPDAG-ESGYSLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEDLYGCSGTFTIMGGDDE----------SMSYDF 888
            M RTGFVALAC MLGAANAL+V TPS  L V+ADRTYTVEWTG  S  RFEIDLY+CGSMCMED CGDWVTALCPYGEDGCPDNEGDYDI+MPEPM G S SGYKVRV D+ DE+  DCSD FYL+AS +AP  G E G +L VTSPA GD A    EYTVEFDYDNGVGS VDRF+IDLY ADG+GDCGTYV SICDKP+IGCKDSMGDYDVEIP DT+AG+YKIRV RFED+ LY CSGTFTI  GDD           S+SY F
Sbjct:    1 MTRTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGDDSDXXXXXEDAFSLSYRF 267          
BLAST of mRNA_Ecto-sp13_S_contig14223.3279.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 381 bits (979), Expect = 9.970e-124
Identity = 190/257 (73.93%), Postives = 211/257 (82.10%), Query Frame = 1
Query:  124 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSG-RFEIDLYHCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIIMPEPMSGESNSGYKVRVMDVSDEDGMDCSDAFYLMASEDAPDAGESGYS-LTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEDLYGCSGTFTIMGGDDESMSYDF 888
            M RTGFVALAC MLG A+ALEVVTP+A  +VV+ R YTVEW+G  S  RFEIDLY+C SMCMED CG+WVTALCPYGEDGCPDNEGDYDI+MPEPMSG S SGYKVRV DV DED  DCSD FYLMA  DAP A ++G   +TVTSP+ GDSAEAGEEYTVEFDYDNG+GS V RF+IDLY A G GDCGT++ ++CDKP+IGCKDSMGDYDVEIP D EAG Y IRVG FEDE +YGCS  F I+G DD SMSY F
Sbjct:    2 MVRTGFVALACGMLGVASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADDSSMSYRF 258          
BLAST of mRNA_Ecto-sp13_S_contig14223.3279.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 358 bits (919), Expect = 1.560e-114
Identity = 177/238 (74.37%), Postives = 198/238 (83.19%), Query Frame = 1
Query:  160 MLGAANALEVVTPSADLIVVADRTYTVEWTGADSG-RFEIDLYHCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIIMPEPMSGESNSGYKVRVMDVSDEDGMDCSDAFYLMASEDAPDAGESGYS-LTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEDLYGCSGTFTIMGGDD 867
            MLGAA+ALEVVTP+   IVVA R YTVEWTG  S  R+EIDLY+CGSMCMED CGDWVTALCPYGEDGCPDNEGDYDI+MPEPMSG S SGYKVRV DV D+D  DCSD FYLMA  +AP AG++G   +TVTSP+ GDSAEAGEEYTVEFDYDNG+GS V RF+IDLY A G GDCGT++ ++CDKP+IGCKDSMGDYDVEIP D EAG Y IRVG FED+ +YGCS  F I+G DD
Sbjct:    1 MLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADD 238          
BLAST of mRNA_Ecto-sp13_S_contig14223.3279.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 354 bits (908), Expect = 3.010e-113
Identity = 178/255 (69.80%), Postives = 208/255 (81.57%), Query Frame = 1
Query:  124 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIIMPEPMSGESNSGYKVRVMDVSDEDGMDCSDAFYLMASEDAPDAGESGYSLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEDLYGCSGTFTIMGGDDESMSYDF 888
            MART F ALA  MLGAANALEVV+P+A  +VVAD  YTVEWTGA SGR++IDLY+CGS+CMED CGDWVTALCPYG+DGCPD +GDYD++MPEPM G S SGYKV V D SDE    CS  F L+AS +APDA + G  ++VTSP++GD+A AG EYTVEFDYDNG+GS V+RF+IDLY + G GDCGTYVT+ICDKPSIGCKDS GDYDV IP+ TE+G Y IRVG FED+D+YGCS +F I+GG  ESMS  F
Sbjct:    1 MARTAFAALAFGMLGAANALEVVSPAAGDMVVADSAYTVEWTGATSGRYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDMGAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGG--ESMSVRF 252          
BLAST of mRNA_Ecto-sp13_S_contig14223.3279.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 351 bits (900), Expect = 4.980e-112
Identity = 174/255 (68.24%), Postives = 202/255 (79.22%), Query Frame = 1
Query:  124 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIIMPEPMSGESNSGYKVRVMDVSDEDGMDCSDAFYLMASEDAPDAGESGYSLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEDLYGCSGTFTIMGGDDESMSYDF 888
            MART F A+A  ML AANALEVV+P   + V+ADR YTVEWTG  +GRFEIDLY+C S CM+D CGDWVTALCPYG DGCPD+ GDYDIIMPEPMSG S SGYKV V +  DE  M CSD F L+ASEDAP+AGE GYSLTVTSP++GD+A AGE YTVE+DY+NG GS  DRF++DLY+  G GDCGTYVT++CD+PSIGC DS GDYDVEIP+DT AG Y IRVG F+DE +Y CS TF +   DD ++S  F
Sbjct:    1 MARTAFAAVAFGMLSAANALEVVSPDGGISVLADRAYTVEWTGTTTGRFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEMGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSDDMTISMRF 254          
BLAST of mRNA_Ecto-sp13_S_contig14223.3279.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 336 bits (862), Expect = 2.160e-106
Identity = 169/245 (68.98%), Postives = 194/245 (79.18%), Query Frame = 1
Query:  124 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIIMPEPMSGESNSGYKVRVMDVSDEDGMDCSDAFYLMASEDAPDAGESGYSLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYM-ADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEDLYGCSGTFTIM 855
            MART F ALA  MLGAANALEVV+P+A + V+ADRTYTVEWTG    RFEIDLY+CGS CMED CGDWVTALCPYG DGCPD +GDYDI+MPEPM+G S SGYKV V D +DE  M CS  F L+AS DAP AGE GYSLTVTSP++GD+A AG  YTVE+DY+NG+GS  DRF+IDLY    G GDCGTYV ++CDKPSIGC DS GDYDVEIP+DT AG Y +RVG F D+ ++ CS  F I+
Sbjct:    1 MARTAFAALAFGMLGAANALEVVSPAAGISVIADRTYTVEWTGTSDSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTS-SGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEVGYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIV 244          
BLAST of mRNA_Ecto-sp13_S_contig14223.3279.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI)

HSP 1 Score: 324 bits (831), Expect = 5.710e-102
Identity = 163/207 (78.74%), Postives = 175/207 (84.54%), Query Frame = 1
Query:  124 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADS-GRFEIDLYHCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIIMPEPMSGESNSGYKVRVMDVSDEDGMDCSDAFYLMASEDAPDAG-ESGYSLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDS 738
            MARTGFVALAC MLGAANAL+V TPS  L V+ADRTYTVEWTG  S  RFEIDLY+CGSMCMED CGDWVTALCPYGEDGCPDNEGDYDI+MPEPMSG S SGYKVRV D+ DE+  DCSD FYL+AS +AP  G E G +L VTSPA GD A    EYTVEFDYDNGVGS+VDRF+IDLY ADGDGDCGTYV SICDKP+IGCKDS
Sbjct:    2 MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 208          
BLAST of mRNA_Ecto-sp13_S_contig14223.3279.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE)

HSP 1 Score: 295 bits (754), Expect = 1.780e-90
Identity = 155/255 (60.78%), Postives = 178/255 (69.80%), Query Frame = 1
Query:  124 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIIMPEPMSGESNSGYKVRVMDVSDEDGMDCSDAFYLMASEDAPDAGESGYSLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEDLYGCSGTFTIMGGDDESMSYDF 888
            MART F ALA  MLGA NALEV +P+A  ++VA  + TVEWTG  SGRF+IDLY+CGS+CMED CGDWVTALCPYG+DGCPD +GDYD++MPEPM G S SGYKV V D SDE  M CS  F L+AS                                 FD+DNG GS V+RFSIDLYM+ G GDCGTYVTSICDK SIGCKDS GDYDV IP+DTE+G Y IRVG FED D++GCS +F I+GG+  SMS  F
Sbjct:    1 MARTAFAALAFGMLGAVNALEVTSPAAGDMIVAASSTTVEWTGTSSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDMGCSGEFTLVASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEIIGGE-SSMSVRF 253          
BLAST of mRNA_Ecto-sp13_S_contig14223.3279.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 2.390e-75
Identity = 131/187 (70.05%), Postives = 147/187 (78.61%), Query Frame = 1
Query:  304 MEDSCGDWVTALCPYGEDGCPDNEGDYDIIMPEPMSGESNSGYKVRVMDVSDEDGMDCSDAFYLMASEDAPDAG--ESGYSLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEDLYGCSGTFTIMG 858
            +ED CG+WVTALCPYG +GCPDNEGDYDI+MPEPMSG S SGYKVRV DV      DCSD FYLMAS +AP  G  ++ Y L VTSP+ GD A+AG EYTVEFDYDNGVGS+VDRF IDLY   G GDCGT+V ++CDK +IGCKDSMGDYDVEIP     G Y IRVGRFED+ LYGCSG F I+G
Sbjct:   12 VEDECGEWVTALCPYGSEGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPY-LMVTSPSAGDKAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDALYGCSGEFEIVG 197          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14223.3279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FYL2_ECTSI6.340e-17297.66EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
A0A6H5JRG9_9PHAE7.140e-12774.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFT9_9PHAE9.970e-12473.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI46_ECTSI1.560e-11474.37EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G3E8_ECTSI3.010e-11369.80Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JY62_9PHAE4.980e-11268.24GPI-anchored domain-containing protein n=2 Tax=Ect... [more]
D7G3F0_ECTSI2.160e-10668.98EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FH21_ECTSI5.710e-10278.74Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5KP11_9PHAE1.780e-9060.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEJ8_9PHAE2.390e-7570.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14223contigEcto-sp13_S_contig14223:265..4256 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2479
Hectar predicted targeting categorysignal peptide
Exons5
Ec32 ortholog descriptionSecreted protein similar to EsV-1-163
Ec32 orthologEc-26_002660.1
Cds size768
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14223.3279.1prot_Ecto-sp13_S_contig14223.3279.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14223 1853..4133 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462760.3720338-UTR-Ecto-sp13_S_contig14223:264..18521681462760.3720338-UTR-Ecto-sp13_S_contig14223:264..1852Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14223 265..1852 -
1681462760.4214785-UTR-Ecto-sp13_S_contig14223:4133..42561681462760.4214785-UTR-Ecto-sp13_S_contig14223:4133..4256Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14223 4134..4256 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462760.380925-CDS-Ecto-sp13_S_contig14223:1852..20041681462760.380925-CDS-Ecto-sp13_S_contig14223:1852..2004Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14223 1853..2004 -
1681462760.3893383-CDS-Ecto-sp13_S_contig14223:2233..23691681462760.3893383-CDS-Ecto-sp13_S_contig14223:2233..2369Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14223 2234..2369 -
1681462760.3974578-CDS-Ecto-sp13_S_contig14223:2712..30061681462760.3974578-CDS-Ecto-sp13_S_contig14223:2712..3006Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14223 2713..3006 -
1681462760.4055955-CDS-Ecto-sp13_S_contig14223:3651..37331681462760.4055955-CDS-Ecto-sp13_S_contig14223:3651..3733Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14223 3652..3733 -
1681462760.4135773-CDS-Ecto-sp13_S_contig14223:4029..41331681462760.4135773-CDS-Ecto-sp13_S_contig14223:4029..4133Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14223 4030..4133 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14223.3279.1

>prot_Ecto-sp13_S_contig14223.3279.1 ID=prot_Ecto-sp13_S_contig14223.3279.1|Name=mRNA_Ecto-sp13_S_contig14223.3279.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=256bp
MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSGRFE
IDLYHCGSMCMEDSCGDWVTALCPYGEDGCPDNEGDYDIIMPEPMSGESN
SGYKVRVMDVSDEDGMDCSDAFYLMASEDAPDAGESGYSLTVTSPAEGDS
AEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSI
GCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEDLYGCSGTFTIMGGDDES
MSYDF*
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mRNA from alignment at Ecto-sp13_S_contig14223:265..4256-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14223.3279.1 ID=mRNA_Ecto-sp13_S_contig14223.3279.1|Name=mRNA_Ecto-sp13_S_contig14223.3279.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3992bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14223:265..4256- (Ectocarpus species13 EcNAP12_S_4_19m)
CAACCCCTTGCTAAACTTCTGTAAAGGCCACAAAGCTCTCGTCAAGTCCC AACCTGCGCGTCAACGCAACAACACTCTACGGCATCCATCACCTCTTGTT CTACCACGCCCACCCAACTCAAGATGGCTCGCACTGGATTCGTTGCTTTG GCCTGCGCCATGCTCGGCGCCGCTAACGCGCTTGAGGTTGTGACCCCGTC TGCCGATCTGATCGTGGTTGCTGACCGGTGAGAGAGCGAGTCAAAGGACG CGACTGCTGTAGCGGAGGGAGACATGTGCGCGCCTTGGTCGGGCATATCT CATGATGTTGTCACACAGCACTTAAGGCTAGCCACGACTACCTCAGGGGC TAGCGAGTAGCCCCCTCGCGTGCCTGGCCGTTTTGACGGGCATTTGTTTT CCGCCGGCTGCTTTTTTCACTCCGTTCCCCGAAGTTCGGTAGAAATTCTG ATTTTTTTCGTGTCGTCACACGCCCGCCGCGCAACTTGCAACCCTTTTTT GCCCCTCTCGCGTGTTTCTGCAGCACCTACACCGTCGAGTGGACTGGAGC CGATTCGGGACGCTTCGAGATTGACCTGTACCACTGCGGTTCCATGTGCA TGGAGGTGAGAGATGAGTGAACACACATGAAAAACACAGAAGTCGTCAGT GCGGGACTGATCCGACAGTTCAAAAGCTGCGCCCCGCGCTGCGTGCCTAC GCAGTACCAACGGGTTTCTTGTTTGCCCTCACTTCCTCGAGGGTACTACG AGAGTGAGAAGGAAACAAACAATCGTCGGTCATCTCTCTCACAAACCACC GGTGCTTAGCAGCCCGGGCTAACCCGAAGCCAGAAGGCTACGCGGTCGAC CAGGGTTTTAACGTGACGTATACATGATTTACATGTCCGTGATGGCGGAG CAAGACAGGGCAGCTGCCACGGCTGCCGTGTAATTGTGACCACATTCTGC ATCCCTTGAGAGCCGGGAGGTTGCGAGGGCGGACGAAATAATGAAGTACC ATTCCCCGCGCTCGGCCCGGAGAAAACTGGGGCTGGACAAGAGTGACTGA GCCGTGGAGAAGTCCGATACATTTCTCCCGGGTGTTGCGCGAACTCCTTA TGCGTATGGGGCCCGTTCCAGACCACTGACCAAAGTCTAGAAAATACCGA CACTACCTGTACCTGTGGCTGGTCTTTCCACTCCCTATTGGATCTTTGTT TTTCCTCCAGCGAATGCATGAAAAAATTGCCATCCCCGTTCGCTCGACAG GACTCCTGCGGTGACTGGGTGACCGCCCTTTGCCCCTACGGCGAGGACGG ATGCCCCGACAACGAGGGCGACTACGACATCATCATGCCCGAGCCGATGT CGGGCGAATCAAACTCCGGCTACAAAGTGCGCGTCATGGATGTCTCAGAC GAAGACGGCATGGACTGCTCTGACGCCTTTTACCTCATGGCGTCTGAAGA CGCGCCGGATGCCGGCGAGTCGGGATACTCTCTCACCGTCACCTCACCCG CTGAGGGCGACTCGGCGGAGGCAGGGGAGGAGTACACCGTCGAGGTGAGA TAAAAAGCCAGTTCAGTGTAAAGATTTGGTGTGTTGCACACTCGCAAAAT CATATACTTTCGTAGAACGCGTACCGTGATTGTAGCCAGTTTTTGTGATG TCCGTGTCTGAAAATGTCGAGAGAACACGGGCACCATAATCCTTTCGTTA CACGTTAGTTTGGAATTTGTAAAAAGGTCGTATGAAGGTGGTCAGCCACC GCTCGTGACGCGGCTGAAGGATGGAGCTTATGGTTTATCAAGTCCTCAGC CGCCGCCTCTACCTTGCTCACTCGACGGAACCTTCCTCGTCGTCCGGGCG CTAACCCGGCCTGTTTTTCCCTTGCTCCTCCCAACAGTTCGATTACGACA ATGGTGTCGGGTCGAAGGTGGACAGGTTCTCGATCGACCTCTACATGGCT GACGGCGACGGTGACTGCGGCACATACGTGACCTCCATCTGCGACAAGCC TTCGATCGGGTGCAAGGACTCGAGTAAGTGCAACTGGAACGGGCTTATTT TCCTCTCAGACTGAAATAGTTATCTCTGGAGCGCAGTTGTGAATGATGCA CTTGCGCGAAAATCTCTGGGCGAGGACACCACTTGCCTCCTCTCAAGGGT CATCATTTTTTTGTTTTACATGTAATGTTGAGACAACAAACACCTATTCT GTTCTTTCTCAGCTCTTTCTCTAACATACCGTCGTACCCCCGAAATTTGC AGTGGGCGACTACGATGTGGAGATCCCCGCAGACACCGAGGCTGGAGACT ACAAGATCCGAGTAGGCCGCTTTGAGGACGAGGACTTGTACGGCTGCTCT GGCACCTTCACGATCATGGGCGGCGACGACGAAAGCATGTCGTACGACTT CTAATTGGCCACGTTTGCTGATGAGGGGCAGGGTTGAATATTAAAAAGGT TCGGTCGAATTCTCGACTGAGCGGTGTGGTACTGTCGAACTCACGCTGCA CCTTTGGTGTAAACGGCTGTGTAGTCGCTCACCGTGGATTTTATTTCATA CTTTCTTTAGATTGTTCAGTCTTTGGGCTGCTTTCACACTTTTTCCTCCG ACACGCCGGGGAATGTCGCGGCCAACCCGACAACGGGCATGCTACGACAG CTCTGTTTCTGTGGAGTTCCCGTCTGCGCCTCTCGCGACAGCAGGCATGA GTGAAGGCTTCAACGCATACTTCGCCGTTCAGTGCCGCTTCTTGGCAAGC CTTAGCGCGCAGCTCGCTGTACGGCTTTCGAGGCGCGCGTCCTTTCCTTT TCCCAGCACCGCCACCCTAGTCGATGTTTTGTACGACCAGGTGTGCGGGA AATGAATCCCTTCCACGTTTTCCCAGTTGTAAATTAGGTCTTATGCGCGT CTGCTGAACCTGGCTAGAGGTTGCCGTTTGAATTCCACGATTTGTGTGTG TAACGTCGCGTTCTTTTCCTCGCATGGTTGCGGCACTTTTACGTCGCGTC GCGTGTTCGGTATTTACGTAAGGCAACGCGCGCCACGTTTTTGGTGTATA ATTGTCTTCTACGTTGCCCCGTTCTTCTTCCTCCCTTCGCGAGGGCAGAT CGAGCGTTGTGGCAACAAGTATATGTTTGTTGGCGATCAAAAGCGACAGG ATTCAATGTGCAAGCATGCAACCCGCGCTAGTCAAGTCGCACAGTAGGTG CTGTGGTGATCAGCTTGTACGGTGTACCAAAGATAAAACCAGGTTCCGTT TTTTGGACCGGGACAACGTTTTCTAGCTGTAGTCGTATCTCGCGGTGGTG GAAGGGGTGGTCTGCTTCGTCGGTTGTCAAAAGTTGTCGGCACACGCAAG TAAGGCCTGCATTGGGATTTTGTTTTTCTTGGAGCGCAACCTTGAGCTTG CCCTGAACTGAATGTTAATTATACAAAGATTTGTCTCCGTGAATGAAAAT ATTTGCATGAACATGAACCGAACAAAAAGATCGAAACGAATAACCGACGC CTGTAAACGCCTGAGTGAAGAAGATCGCTCAACGAGATACACATCGGTTG GAGCATCCCCCCGATTCAGCGGGAAGTGTGACGGGGCAGTATTCGCCGGA GACAGGTGTTGTAGATTTGCTCTCAACATGTGTGCGAACTGACCTGATCA GAGCCGACATTATTCCGAACCATTCGCCCGTCGGCGAATACACAAAGGTA CTGTCATGGACCATGTCGTCTTTCTCGCGGTCATGTTCCAACGAGGATCA ACTAAATGGACATGTGGACTTTCATACTGGAGACATGCGCTGTCAGCGCT CGAGATCACTTCGATGCAAAACTCGCGTGAAGTGATAGCTCCGAGACGCG AGGACCTTGCCAGTGAGCGGCTTGCGATCGGGGGGCGACCGTGGCGTCGC GGTAGCAAAGGCGCAAACTCGCGCTGCCACCGGTTTGTGACGTCACGCTT CGCAGCGTTCGGAGGCGTGCATTCACCTTTTTTTTTAACTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14223:265..4256-

>mRNA_Ecto-sp13_S_contig14223.3279.1 ID=mRNA_Ecto-sp13_S_contig14223.3279.1|Name=mRNA_Ecto-sp13_S_contig14223.3279.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=768bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14223:265..4256- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCGCACTGGATTCGTTGCTTTGGCCTGCGCCATGCTCGGCGCCGC
TAACGCGCTTGAGGTTGTGACCCCGTCTGCCGATCTGATCGTGGTTGCTG
ACCGCACCTACACCGTCGAGTGGACTGGAGCCGATTCGGGACGCTTCGAG
ATTGACCTGTACCACTGCGGTTCCATGTGCATGGAGGACTCCTGCGGTGA
CTGGGTGACCGCCCTTTGCCCCTACGGCGAGGACGGATGCCCCGACAACG
AGGGCGACTACGACATCATCATGCCCGAGCCGATGTCGGGCGAATCAAAC
TCCGGCTACAAAGTGCGCGTCATGGATGTCTCAGACGAAGACGGCATGGA
CTGCTCTGACGCCTTTTACCTCATGGCGTCTGAAGACGCGCCGGATGCCG
GCGAGTCGGGATACTCTCTCACCGTCACCTCACCCGCTGAGGGCGACTCG
GCGGAGGCAGGGGAGGAGTACACCGTCGAGTTCGATTACGACAATGGTGT
CGGGTCGAAGGTGGACAGGTTCTCGATCGACCTCTACATGGCTGACGGCG
ACGGTGACTGCGGCACATACGTGACCTCCATCTGCGACAAGCCTTCGATC
GGGTGCAAGGACTCGATGGGCGACTACGATGTGGAGATCCCCGCAGACAC
CGAGGCTGGAGACTACAAGATCCGAGTAGGCCGCTTTGAGGACGAGGACT
TGTACGGCTGCTCTGGCACCTTCACGATCATGGGCGGCGACGACGAAAGC
ATGTCGTACGACTTCTAA
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