mRNA_Ecto-sp13_S_contig14214.3273.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14214.3273.1
Unique NamemRNA_Ecto-sp13_S_contig14214.3273.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14214.3273.1 vs. uniprot
Match: A0A6H5KVT2_9PHAE (Mitochondrial fission process protein 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT2_9PHAE)

HSP 1 Score: 276 bits (705), Expect = 2.020e-91
Identity = 156/164 (95.12%), Postives = 157/164 (95.73%), Query Frame = 2 
Query:    2 SYAAMALAVAAATAGVGEAFVAAPAARTGPQASSSSRASCRAASRGGRRGAGVSMIVGAEAQVADTTNLLFAQMAGCTGLISAGYKITWDKGEDAEEGEDGEEREVDIFRDTALRYMGYANEVGEAFRPLIPAFAVVASYGVAIAYVSADAVAKGFKCAKESDS 493
            SYAAMALAVAAATAGVGEAFVAAP A TG  A SSS ASCRAASRGG RGAGVSMIVGAEAQVADTTNLLFAQMAGCTGLISAGYKITWDKGEDAEEGEDGE+REVDIFRDTALRYMGYANEVGEAFRPLIPAFAVVASYGVAIAYVSADAVAKGFKCAKESDS
Sbjct:    6 SYAAMALAVAAATAGVGEAFVAAPVASTGRPAPSSSWASCRAASRGGARGAGVSMIVGAEAQVADTTNLLFAQMAGCTGLISAGYKITWDKGEDAEEGEDGEKREVDIFRDTALRYMGYANEVGEAFRPLIPAFAVVASYGVAIAYVSADAVAKGFKCAKESDS 169
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BLAST of mRNA_Ecto-sp13_S_contig14214.3273.1 vs. uniprot
Match: D8LKC7_ECTSI (Mitochondrial fission process protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKC7_ECTSI)

HSP 1 Score: 261 bits (667), Expect = 4.560e-87
Identity = 148/160 (92.50%), Postives = 150/160 (93.75%), Query Frame = 2 
Query:   14 MALAVAAATAGVGEAFVAAPAARTGPQASSSSRASCRAASRGGRRGAGVSMIVGAEAQVADTTNLLFAQMAGCTGLISAGYKITWDKGEDAEEGEDGEEREVDIFRDTALRYMGYANEVGEAFRPLIPAFAVVASYGVAIAYVSADAVAKGFKCAKESDS 493
            MALAVAAATAGVGEAFVAAP ARTGP ASSSS ASCRAASRGG RGAGVSMIVGAEAQVADTTNLLFAQMAGCTGLISAGYKITWDKGE+AE      EREVDIFRDTALRYMGYANEVGEAFRPLIPAFAVVASYGVAIAYVSADAV+KGFKCAKESDS
Sbjct:    1 MALAVAAATAGVGEAFVAAPVARTGPPASSSSWASCRAASRGGGRGAGVSMIVGAEAQVADTTNLLFAQMAGCTGLISAGYKITWDKGEEAEXXXXXXEREVDIFRDTALRYMGYANEVGEAFRPLIPAFAVVASYGVAIAYVSADAVSKGFKCAKESDS 160
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BLAST of mRNA_Ecto-sp13_S_contig14214.3273.1 vs. uniprot
Match: A0A835Z9H3_9STRA (Mitochondrial fission process protein 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9H3_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.560e-26
Identity = 65/127 (51.18%), Postives = 77/127 (60.63%), Query Frame = 2 
Query:  206 LLFAQMAGCTGLISAGYKITWDKGE-DAEEGED-GEEREVDIFRDTALRYMGYANEVGEAFRPLIPAFAVVASYGVAIAYV-------------------------------SADAVAKGFKCAKES 487
            +L+AQ+AGC  L+ AG+K+  D+GE D  EGE  GEEREVDIFRDT +RY+GYANE GEAFRPL+P   V  SY VAIAYV                               SADA+AKG+ CAKES
Sbjct:   13 MLYAQLAGCGSLLGAGFKLIGDEGEEDGAEGEGAGEEREVDIFRDTPVRYLGYANECGEAFRPLVPGIVVTLSYAVAIAYVRHGGMGQLFEXXXXXXXXXXXXXXXXXXFAVSADAIAKGYSCAKES 139
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BLAST of mRNA_Ecto-sp13_S_contig14214.3273.1 vs. uniprot
Match: A0A6U1M3H5_9STRA (Mitochondrial fission process protein 1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1M3H5_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.120e-19
Identity = 53/101 (52.48%), Postives = 64/101 (63.37%), Query Frame = 2 
Query:  188 VADTTNLLFAQMAGCTGLISAGYKITWDKGEDAEEGEDGEEREVDIFRDTALRYMGYANEVGEAFRPLIPAFAVVASYGVAIAYVSADAVAKGFKCAKESD 490
            V D   LL  Q+AG +  I +GY +   +G + EE E  E  EVDI+RDT LRYMGY NEVGEAFRP+IP   V   Y VAI YV ADA++K  K  K S+
Sbjct:   51 VIDDPKLLIEQVAGLSVFIGSGYVLESREGVEEEEEEVTEGGEVDIYRDTPLRYMGYMNEVGEAFRPVIPVTGVYLGYVVAIVYVFADAISKARKAPKISE 151
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BLAST of mRNA_Ecto-sp13_S_contig14214.3273.1 vs. uniprot
Match: A0A7S3AVA9_9EUKA (Mitochondrial fission process protein 1 n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AVA9_9EUKA)

HSP 1 Score: 85.1 bits (209), Expect = 5.420e-17
Identity = 52/103 (50.49%), Postives = 64/103 (62.14%), Query Frame = 2 
Query:  158 VSMIVGAEAQVADTTNLLFAQMAGCTGLISAGYKIT-WDKGEDAEEGEDGEEREVDIFRDTALRYMGYANEVGEAFRPLIPAFAVVASYGVAIAYVSADAVAK 463
            V  ++  EA+  + T LL AQM     +I  G  +  W   E+ EE E  E+  VDI+RDTALRYMGYANEVGEAFRPL+P   V A+Y  AI Y+ AD V K
Sbjct:   64 VGTLLAEEAEPEEITPLLIAQMGVIVAMIGGGTALEIWGDVEEPEE-EGAEDGAVDIYRDTALRYMGYANEVGEAFRPLVPVAVVYATYVGAIGYILADTVDK 165
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BLAST of mRNA_Ecto-sp13_S_contig14214.3273.1 vs. uniprot
Match: A0A7S2GNS6_9STRA (Mitochondrial fission process protein 1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GNS6_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 5.670e-17
Identity = 51/86 (59.30%), Postives = 60/86 (69.77%), Query Frame = 2 
Query:  236 GLISAGYKITWDKGEDAE-EGEDGE---EREVDIFRDTALRYMGYANEVGEAFRPLIPAFAVVASYGVAIAYVSADAVAKGFKCAK 481
            GL+SAGY +    GE  E EGE+     + EVD++RDT +RY GYANEVGEAF PL+PA+ V ASY VAIAYV AD V KG K  K
Sbjct:   97 GLVSAGYALL--SGESGEAEGENSAAAADGEVDLYRDTPVRYCGYANEVGEAFAPLVPAWIVPASYAVAIAYVCADTVDKGVKAFK 180
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BLAST of mRNA_Ecto-sp13_S_contig14214.3273.1 vs. uniprot
Match: W7U443_9STRA (Mitochondrial fission process protein 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U443_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.250e-16
Identity = 50/107 (46.73%), Postives = 68/107 (63.55%), Query Frame = 2 
Query:  188 VADTTNLLFAQMAGCTGLISAGYKITWDKGEDAEEG---------EDGEE-REVDIFRDTALRYMGYANEVGEAFRPLIPAFAVVASYGVAIAYVSADAVAKGFKCA 478
            +A+ T  L AQ+AGC  L+  G K+   K E  EEG         +DG E +++D++RDTA+RY GYANEVGEAFRP++P   V  SY VA  Y+ AD+ ++G K A
Sbjct:   65 LAEVTPALLAQLAGCAVLVGTG-KVFQQKEE--EEGIEPVAPWAPKDGTETKDIDLYRDTAVRYFGYANEVGEAFRPVVPTILVTFSYTVAFVYILADSYSQGTKVA 168
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BLAST of mRNA_Ecto-sp13_S_contig14214.3273.1 vs. uniprot
Match: A0A7S1H4A8_9STRA (Mitochondrial fission process protein 1 (Fragment) n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H4A8_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 9.110e-16
Identity = 43/65 (66.15%), Postives = 50/65 (76.92%), Query Frame = 2 
Query:  269 DKGEDAEEGEDGEEREVDIFRDTALRYMGYANEVGEAFRPLIPAFAVVASYGVAIAYVSADAVAK 463
            D+GE+  E   G E EVDI+RDTALRY GYANEVGEAF PL+P++ V ASYG+AI YV AD V K
Sbjct:    1 DEGEEEMESS-GPEGEVDIYRDTALRYAGYANEVGEAFAPLVPSWCVPASYGIAITYVVADTVDK 64
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BLAST of mRNA_Ecto-sp13_S_contig14214.3273.1 vs. uniprot
Match: A0A3N0YDU7_ANAGA (Mitochondrial fission process protein 1 n=1 Tax=Anabarilius grahami TaxID=495550 RepID=A0A3N0YDU7_ANAGA)

HSP 1 Score: 75.9 bits (185), Expect = 3.630e-15
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 2 
Query:  311 REVDIFRDTALRYMGYANEVGEAFRPLIPAFAVVASYGVAIAYVSADAVAKGFKCA 478
            +EVDI+RDT +R++GYANEVGEAFR L+P  AV ASY VA AYVSADA+ KG K A
Sbjct:   10 KEVDIYRDTWVRFLGYANEVGEAFRALVPVSAVWASYAVATAYVSADALDKGKKAA 65
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BLAST of mRNA_Ecto-sp13_S_contig14214.3273.1 vs. uniprot
Match: A0A8C3UVQ2_CATUS (Mitochondrial fission process protein 1 n=2 Tax=Passeriformes TaxID=9126 RepID=A0A8C3UVQ2_CATUS)

HSP 1 Score: 77.8 bits (190), Expect = 4.720e-15
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 2 
Query:  314 EVDIFRDTALRYMGYANEVGEAFRPLIPAFAVVASYGVAIAYVSADAVAKGFKCAKESD 490
            E D++RDT +RY+GYANEVGE+FRPL+P   V ASYGVA AYV+ADA+ KG K A  SD
Sbjct:   10 EPDLYRDTWVRYLGYANEVGESFRPLVPVPVVWASYGVATAYVTADAIDKGRKAATVSD 68
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14214.3273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVT2_9PHAE2.020e-9195.12Mitochondrial fission process protein 1 n=1 Tax=Ec... [more]
D8LKC7_ECTSI4.560e-8792.50Mitochondrial fission process protein 1 n=1 Tax=Ec... [more]
A0A835Z9H3_9STRA1.560e-2651.18Mitochondrial fission process protein 1 n=1 Tax=Tr... [more]
A0A6U1M3H5_9STRA3.120e-1952.48Mitochondrial fission process protein 1 n=1 Tax=Fi... [more]
A0A7S3AVA9_9EUKA5.420e-1750.49Mitochondrial fission process protein 1 n=1 Tax=Ha... [more]
A0A7S2GNS6_9STRA5.670e-1759.30Mitochondrial fission process protein 1 n=1 Tax=Di... [more]
W7U443_9STRA6.250e-1646.73Mitochondrial fission process protein 1 n=1 Tax=Na... [more]
A0A7S1H4A8_9STRA9.110e-1666.15Mitochondrial fission process protein 1 (Fragment)... [more]
A0A3N0YDU7_ANAGA3.630e-1569.64Mitochondrial fission process protein 1 n=1 Tax=An... [more]
A0A8C3UVQ2_CATUS4.720e-1566.10Mitochondrial fission process protein 1 n=2 Tax=Pa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14214contigEcto-sp13_S_contig14214:1865..4406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size495
Hectar predicted targeting categoryother localisation
Exons5
Cds size273
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14214.3273.1prot_Ecto-sp13_S_contig14214.3273.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14214 3398..4406 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462759.96255-UTR-Ecto-sp13_S_contig14214:1864..19731681462759.96255-UTR-Ecto-sp13_S_contig14214:1864..1973Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14214 1865..1973 -
1681462759.9722977-UTR-Ecto-sp13_S_contig14214:2709..27771681462759.9722977-UTR-Ecto-sp13_S_contig14214:2709..2777Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14214 2710..2777 -
1681462759.9802387-UTR-Ecto-sp13_S_contig14214:3354..33971681462759.9802387-UTR-Ecto-sp13_S_contig14214:3354..3397Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14214 3355..3397 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462759.9878569-CDS-Ecto-sp13_S_contig14214:3397..34431681462759.9878569-CDS-Ecto-sp13_S_contig14214:3397..3443Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14214 3398..3443 -
1681462759.9957373-CDS-Ecto-sp13_S_contig14214:3900..39711681462759.9957373-CDS-Ecto-sp13_S_contig14214:3900..3971Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14214 3901..3971 -
1681462760.0041173-CDS-Ecto-sp13_S_contig14214:4250..44061681462760.0041173-CDS-Ecto-sp13_S_contig14214:4250..4406Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14214 4251..4406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14214.3273.1

>prot_Ecto-sp13_S_contig14214.3273.1 ID=prot_Ecto-sp13_S_contig14214.3273.1|Name=mRNA_Ecto-sp13_S_contig14214.3273.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
FLRCDGVSRGGGDGRCRGGFRCGAGGKDGPAGVFFEPGLLPGGVSRGATG
SGSQHDRWGGGPSGGHDQPSLRADGRVHWADQRRVQDYVG*
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mRNA from alignment at Ecto-sp13_S_contig14214:1865..4406-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14214.3273.1 ID=mRNA_Ecto-sp13_S_contig14214.3273.1|Name=mRNA_Ecto-sp13_S_contig14214.3273.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2542bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14214:1865..4406- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCTACGCTGCGATGGCGTTAGCCGTGGCGGCGGCGACGGCCGGTGTCG
GGGAGGCTTTCGTTGCGGCGCCGGCGGCAAGGACGGGCCCGCAGGCGTCT
TCTTCGAGCCGGGCCTCCTGCCGGGCGGCGTCTCGAGGGGGGCGACGGGG
AGCGGGGTGAGACATATCGTCCGCATTTTTGGCTGTCGTCAATGGGATAT
CTCTTTGTCGCGGCAGGCTAAGGTTTGGGGGGGGGATTGGGTCTACTTTT
TCTTGTTTTCGTTGTCTCTCTCTTTGCCATGCTTGTGCCATGGCAGATCA
CTATAGCTTGTGCTCGAGGTGGGGGGAGGATTCTCATGTCTTGTATACCT
TGGTCGTTAGATCGTTGACCACGCTTTGTGGCGTGATGCCTTGTCTACCT
TTGCCTCTCCGTGCTGCTGCCATTCTTGTCGACAGAGTCAGCATGATCGT
TGGGGCGGAGGCCCAAGTGGCGGACACGACCAACCTTCTCTTCGCGCAGA
TGGCAGGTAGGTGTGGTGGCAAAAGCCATTGAAATAATCGGGGGCAAAAA
GCAAGCGATTGGATTTGTACAGTAGTCCATCAGCACATCTTGGTATGTGT
GTGGGGGTTGCGTGGAGAGAGGGAACACCTGGCGAGTTTTGGGGAAGTAA
GTGTTATTTTCAGCCGACAATGAAAGGTGTACATGGCCGGTGAGGTACGG
TGACACAGATGCAATATCCAGGTTGTCTCATACTCTGAGTACGGTCGGCC
ACCCGGTAGAAGACCGGTAAAATCACTTTGACACTTCTGTTATAAGGCCG
TTTGCGGAGACCGCAAGTGCTATGCCAATGGAATGAGGGCAGTTTAGTTT
TCGGAGTTGTTCCAGAGCAGCTCCGCGAACGAACCGCGCGCCCACCCATT
CCGTGGAAAACCGGGTATGAAATCACGGAACATGTCTTTGTTTTCCGGAA
TCTTCTCCGGCAGGGTGCACTGGGCTGATCAGCGCAGGGTACAAGATTAC
GTGGGATAAAGGGGAGGATGCAGAGGAGGGAGAGGATGGCGAGGAGCGAG
AGGTGCGATGAAGCTTTTTGGCCCCTGGAGAGGGTAAAGGGCTGTTAAGA
AGTGTTCCTGGGCGGCCAGTAGTGTTTTGAAGGACTCAATATTGCAATCA
GAGACATGTGTCGACGAGAAGAGGTGGAACTTTTTTGTGCATGATTTTTT
TTTGTTTCTCTGGGGCAAGACTTGTTTAACGGTGACGTTCTTGCAGAAGG
GGTCTTTATCCTGCTCAACATCTTGCAGCAATTGCCGAGGCTTAGCAATG
ACAACAGTAGACGCAGCTGGGCGTCACCGCTGATAACATTGATGTTTCAT
GGTACGTGTGTGCACGACTGGCGGTCAGAGCTATCACGGATCTTCGCGGA
ACAAGACAGCACTGAAACCAGCGGGAAACCACAAACACTTTATTCGTACG
GGATGCTCAGGTGGCCATTCACACAACCATGGGCCGATGGCAACCAACCC
AACAGGATCACCAACAACAACAACAACGGAACTTCCCCAGCAACACCATC
GTAGGAGTAGCAACAACCACGTTGTATCAGTTGACCCACTTTGCGGCGCC
CATTCCCTGCATGCCTTCCCGCTGCGCAGGTTGACATTTTCAGGGATACC
GCGCTGCGCTACATGGGGTACGCTAACGAAGTTGGAGAGGCCTTCAGGTG
AGCTCATACCGACGCTGGCTCAACGCGTTCGTGTCCTCACCAGTGATAGC
CGTGCAGACAGTAGCGTTGAAGAAGCATTTTGGTGAGCGATGCCGTCACT
GGTTTGACACAATTCTGTCCTCAAAAAAAATTGAACTAGTGATGATTACC
ACATGGTCGTATTGAAGAAGACGGGGGTGGGGTGATATGATGGCACTCCA
ACAAAGCCCCCTTTGCATACCAAGAGATTTCTCGGCAAGACAGGTCCTGA
GCAACCGTCGCAGCGTAGTTTTCTCGAGCACCGTGTGCTTCTACTTAGCT
GTTTTGTTGAGTGTGTTCGTTAAGGTCCGTATTCCGCGTTGAAGATTCCC
GTTCGGATACGCTGATGGCGCATACGGCGGGAAAGGAGGGAGGGCCTCAG
GACTCGCCGAGTGTGCCTCACCGACAAGAGATTTTCTCTTTTGTGGCACA
GGGGATGAACGAGGCGTGTTTTGTCAACCTTGGCGAGGAGCTTACGACGA
GATTTGTTCCCCACGGGGGGGGGTGTGAACCACGAGGAACTTGACGTATT
GACTACCAGGGCCTTGGCGTTCACTTGGTGGCAAACAGCCGTTCTTCAAA
GAAATCGTAAAGAAACTGATGGGAGGTTTCAACATCTAGGAAACTACGCA
AAACTGAAATTACTGCAGTGCCCGACGTCCACCCTTCCCCTCGTCTGTCG
CCAATTACCCCCTACCCCCCGCTGCCGCTGTAGGCCGCTGATCCCGGCGT
TTGCGGTGGTGGCTTCTTACGGTGTGGCCATTGCCTACGTCTCGGCGGAC
GCTGTCGCGAAGGGGTTCAAATGCGCTAAGGAGAGCGATTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14214:1865..4406-

>mRNA_Ecto-sp13_S_contig14214.3273.1 ID=mRNA_Ecto-sp13_S_contig14214.3273.1|Name=mRNA_Ecto-sp13_S_contig14214.3273.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14214:1865..4406- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCTACGCTGCGATGGCGTTAGCCGTGGCGGCGGCGACGGCCGGTGTCG
GGGAGGCTTTCGTTGCGGCGCCGGCGGCAAGGACGGGCCCGCAGGCGTCT
TCTTCGAGCCGGGCCTCCTGCCGGGCGGCGTCTCGAGGGGGGCGACGGGG
AGCGGGAGTCAGCATGATCGTTGGGGCGGAGGCCCAAGTGGCGGACACGA
CCAACCTTCTCTTCGCGCAGATGGCAGGGTGCACTGGGCTGATCAGCGCA
GGGTACAAGATTACGTGGGATAA
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