mRNA_Ecto-sp13_S_contig14080.3190.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14080.3190.1
Unique NamemRNA_Ecto-sp13_S_contig14080.3190.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14080.3190.1 vs. uniprot
Match: A0A6H5KPT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT4_9PHAE)

HSP 1 Score: 473 bits (1216), Expect = 7.420e-163
Identity = 240/278 (86.33%), Postives = 246/278 (88.49%), Query Frame = 1 
Query:    1 DNVLRMNEFLRVGHSITSVDRKFTAVLESDCNLVVYHLRGGGKKVRVWETSSFSPEGRCFVAIQDNGMLVVMAGNDPSAPGNVLWSNNQAHVGWFRQNSFHAAVLPSGNLVVSQGDSPMHPAARRCVWGAFGCPGDGGVMEWKLVWMSFRTKAGDMWCKVKGCDGAGENSYDSDNGENSGGNETRDSSAWKWQSGGXXXAGVDGGAFDPRAAGRGGGRKDDGVGGG-----MSHLLTQPGAAIKKAAGQGVAWLTEALAKIKSAAEDSAYAASRPRHW 819
            DNVLRMNEFLRVGHSI SVDRKFTAVLESDCNLVVYHLRGGGKKV  WETSSFS EGRCFVAIQDNGMLVVMAGNDPSAPGNVLWSNN AHVGWFRQNSFHAAVLPSGNLVVSQGDSPMHP ARRCVWGAFGCPGDGGVMEWKLVWMS R KAGD+WCKVKGCDGA E SY SD+G N GGN TRDSS+WKWQSGG   AGVDGGAFDP AAGR  GR+D           +SHLLTQPG AIKKAAG+GVAWLTEALAKIKSAAEDSAYAASRPRHW
Sbjct:  294 DNVLRMNEFLRVGHSIASVDRKFTAVLESDCNLVVYHLRGGGKKV--WETSSFSSEGRCFVAIQDNGMLVVMAGNDPSAPGNVLWSNNHAHVGWFRQNSFHAAVLPSGNLVVSQGDSPMHPGARRCVWGAFGCPGDGGVMEWKLVWMSVRNKAGDIWCKVKGCDGAEEYSYYSDSGGNPGGNGTRDSSSWKWQSGGGDGAGVDGGAFDPWAAGRSDGREDXXXXXXXXXXXISHLLTQPGTAIKKAAGRGVAWLTEALAKIKSAAEDSAYAASRPRHW 569
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14080.3190.1 vs. uniprot
Match: D7FV20_ECTSI (Bulb-type lectin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV20_ECTSI)

HSP 1 Score: 423 bits (1087), Expect = 6.180e-146
Identity = 233/321 (72.59%), Postives = 240/321 (74.77%), Query Frame = 1 
Query:    1 DNVLRMNEFLRVGHSITSVDRKFTAVLESDCNLVVYHLRGGGKKVR----------------------------------------VWETSSFSPEGRCFVAIQDNGMLVVMAGNDPSAPGNVLWSNNQAHVGWFRQNSFHAAVLPSGNLVVSQGDSPMHPAARRCVWGAFGCPGDGGVMEWKLVWMSFRTKAGDMWCKVKGCDG--AGENSYDSDNGENSGGNETRDSSAWKWQSGGXXXAGVDGGAFDPRAAGRGGGRKDDGVGGG------MSHLLTQPGAAIKKAAGQGVAWLTEALAKIKSAAEDSAYAASRPRHW 819
            DNVLRMNEFLRVGHSI SVDRKFTAVLESDCNLVVYHLRGGGKKV+                                        VWETSSFS EGRCFVAIQDNGMLVVMAGNDPSAPGNVLWSNNQAHVGWFRQNSFHAAVLPSGNLVVSQGDSPMH AARRCVWGAFGCPGDGGVMEWKLVWMSFRTKAGD+WCKVKGCDG  AGE SY SD+G+N GGN TRDSS+WK Q   XXX      AFDP A                     +SHLLTQPGAAIKKAAG+GVAWLTEALAKIKSAAEDSAYAASRPRHW
Sbjct:   66 DNVLRMNEFLRVGHSIASVDRKFTAVLESDCNLVVYHLRGGGKKVKSLWRWGGGACSYVLHALAVRPLTTRLREDGALFPQDRSPMVWETSSFSSEGRCFVAIQDNGMLVVMAGNDPSAPGNVLWSNNQAHVGWFRQNSFHAAVLPSGNLVVSQGDSPMHSAARRCVWGAFGCPGDGGVMEWKLVWMSFRTKAGDIWCKVKGCDGDGAGEYSYYSDSGDNPGGNGTRDSSSWKRQXXXXXXXXXXXXAFDPWAXXXXXXXXXXXXXXXXXXXXXISHLLTQPGAAIKKAAGRGVAWLTEALAKIKSAAEDSAYAASRPRHW 386
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14080.3190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPT4_9PHAE7.420e-16386.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV20_ECTSI6.180e-14672.59Bulb-type lectin domain-containing protein n=1 Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14080contigEcto-sp13_S_contig14080:640..3436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size822
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionHeat shock protein 40 like protein/ DnaJ domain containing protein
Ec32 orthologEc-14_003850.1
Cds size807
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462752.6045697-CDS-Ecto-sp13_S_contig14080:639..9841681462752.6045697-CDS-Ecto-sp13_S_contig14080:639..984Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14080 640..984 -
1681462752.6235244-CDS-Ecto-sp13_S_contig14080:1784..19911681462752.6235244-CDS-Ecto-sp13_S_contig14080:1784..1991Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14080 1785..1991 -
1681462752.6394296-CDS-Ecto-sp13_S_contig14080:2443..25751681462752.6394296-CDS-Ecto-sp13_S_contig14080:2443..2575Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14080 2444..2575 -
1681462752.652762-CDS-Ecto-sp13_S_contig14080:3298..34211681462752.652762-CDS-Ecto-sp13_S_contig14080:3298..3421Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14080 3299..3421 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462752.6633208-UTR-Ecto-sp13_S_contig14080:3421..34361681462752.6633208-UTR-Ecto-sp13_S_contig14080:3421..3436Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14080 3422..3436 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14080.3190.1prot_Ecto-sp13_S_contig14080.3190.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14080 640..3421 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14080.3190.1

>prot_Ecto-sp13_S_contig14080.3190.1 ID=prot_Ecto-sp13_S_contig14080.3190.1|Name=mRNA_Ecto-sp13_S_contig14080.3190.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=269bp
MNEFLRVGHSITSVDRKFTAVLESDCNLVVYHLRGGGKKVRVWETSSFSP
EGRCFVAIQDNGMLVVMAGNDPSAPGNVLWSNNQAHVGWFRQNSFHAAVL
PSGNLVVSQGDSPMHPAARRCVWGAFGCPGDGGVMEWKLVWMSFRTKAGD
MWCKVKGCDGAGENSYDSDNGENSGGNETRDSSAWKWQSGGGGGAGVDGG
AFDPRAAGRGGGRKDDGVGGGMSHLLTQPGAAIKKAAGQGVAWLTEALAK
IKSAAEDSAYAASRPRHW*
back to top

mRNA from alignment at Ecto-sp13_S_contig14080:640..3436-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14080.3190.1 ID=mRNA_Ecto-sp13_S_contig14080.3190.1|Name=mRNA_Ecto-sp13_S_contig14080.3190.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2797bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14080:640..3436- (Ectocarpus species13 EcNAP12_S_4_19m)
GACAACGTCCTGCGCATGAACGAGTTCCTCCGGGTGGGGCACAGCATCAC
CTCTGTCGACCGCAAGTTCACGGCGGTCTTGGAGAGCGACTGCAACCTGG
TGGTCTACCACTTGAGAGGAGGGGGGAAGAAGGTCAGGGTGCGTGCTTGA
TTGGCTACAGCAGCTGGTGGTTGGCGTGCGTAGTCATTACCACGAGGCGG
GCTTGTTGTTGGACGTGGTGTTGTGTCGGGCTCGGTGAAGACGTCGAGTC
TATGGTGATGGGGGGGGAAGCGGTATTCAAACTCTTTACACGCCTTAATC
TGCCGCACACGCACCTATGACTTCTATTGTATGGCCGCCCCTCTTCGTCT
TTGACACCGTACTCCTCCGTGGCTGTGTCTCAGTATGTCATGTGTTCTAG
ACGTCGATGTACCTCTTCTTGCGTGTTTTCTGGAGGCACCAGACGGGGGC
TTCACGCAAGAGGAAACCTTCACAGAATGATGCCTTCTTTTTGTATTTCT
CCGCGTTCTTCCTGTGGTGATTGCCTTGCACCTTTTGATCGCGAGAAGGG
TTAGAATTTTCGCCGTTTTGTGTCGCTTGTGGCCCGTAAAATGTCGATTT
CCCCCCTGTTACTCGATGGATCTACTTGCCAATCAGATCACCCTTGTGTT
TACGTTCCAAACGATGCGCCAGTTCGTTCTCCCGGTACCCCCGAGTGGTG
CGTTCGTTTCGCCGCCACTCTTCCTGTTCATGCGTGCAATATGTGGTGCG
CGGTTGTTTGGCGCTCTCGAGTCTTTGCGCCGTGTACATGATTTTTGACG
CCGCCGACGTGGGGTCGTAAACGGACGGGGAACGAACGACTATTGATACA
CTCTTGAGCAGGTGTGGGAGACCTCGTCGTTCTCTCCGGAGGGGCGGTGC
TTCGTCGCTATCCAGGATAACGGCATGCTGGTCGTCATGGCCGGGAACGA
TCCGAGCGCACCCGGGAACGTTCTTTGGAGCAATAACCAAGCGGTGCGTT
TTCTTCGTCGAATCTTACGTCAGTTTTTTTGTTCTACATATGTCGTGTCA
TCCGGTATGTGGCACTCTCCTTCGTTCTGCGTTTTGTGCATGCTTGTGCG
TAGTTGATTCTTTGGGATCGTTTGGAATTGTCACCACTACCAACCTCTTG
TAGCTTATTGTTTTCATTTGTCGCCCCCCCCCCTCCCCTGTTGCGCACAA
CTTCGCACCCTCTCCCTCTCCTTTTATCTCCCCCGCTCCTACTCCTCCCA
GCACTCGAATTTGATCAATCTTGCAATCCGGTCAGCCCCCAACGTTGTTG
GTATTAATACATATAGCGAGGCTGTAGCATGCGTGCCGCTCTGATAAACA
GTACACCAAAAACTGCAGCGCTGTCAACACCACCTCATTGCACTTAACTT
TACTCCCCCCCCCCCGCCCGATACGCACCCTTGTTGATGAAGCAGCACGT
GGGTTGGTTCAGGCAGAACTCATTCCACGCCGCGGTTCTCCCGAGCGGCA
ATTTGGTGGTATCTCAAGGGGATTCGCCCATGCACCCAGCCGCTCGGCGC
TGCGTCTGGGGGGCGTTTGGGTGTCCGGGTGACGGGGGCGTGATGGAATG
GAAGCTGGTGTGGATGTCGTTCAGGACCAAGGCTGGCGACATGTGGTGCA
AGGTCCGTTTCTCACTTTAATGAGCTCTCTTGAAATCTGTCGTGCTTGCG
CTTGTTTTCGAAAGGATGCTCAATCAATCAGCAGTATTGTAGCACTGCTG
ATTTTTCTCTCTTCGTTATTTGTGCGCGCCGTGATGCTTTTGCGATGCTT
TTCTCCTGTTGGTTGTGTTTGGATTTGATGTGTGTGCCCAATAGAGCAAC
CCCCACCTCCCCTGTTCTACCGTGATGTTGACCCTCTTTTCTACCGCGCC
ACTTCTGGTACCGTGGGCGTCGTTACAATCAGAAGTATAGTTTTTTTGAG
GCCGCCCTAAAGAGTTAGGGCTTGACGCCGACCTGCGAAGTGTACTGCGT
ATTGAGGCTATTGGACGAACGGAATGATGTATGCCGTAGACACCAAGTGG
GAGCCTAATCGTGGATGGGGCAACAACACCGGCAGTACCTGACGATGTGT
CTTGCCGGCCTGGCACACAGTCAACTCCGACACGACAGAGCGTGAGTTCA
TGCGTTCATGCGAACAAGAGGTGCGGCACGCCGGAATAACGCCCCCCCCC
CCCTTTATTTGTTCTGATGCTGTGTGTGCCGTATGTGGGTTTTCGATCCC
GCTGCACCGAGGTCAAGGGCAGCAGGCATTACCCCCCTTCTAGGGTACTC
GATCGTCGCGGAGAATTATCAAGGAGCGCCGCCGTAGGTAAAATTGATTG
AGCTTTGACAAAATCACATGGTTGGGCACCAACCCCTCGTGCTCTGCAGA
TTGCGATTGTCCTTCCTTATCCTCTCTCCTCGCCACATTTCGTTACTGCC
AGGTGAAGGGATGCGACGGAGCGGGAGAGAACTCTTACGACAGCGACAAC
GGAGAAAACTCTGGCGGTAACGAGACCCGCGATTCTTCCGCTTGGAAGTG
GCAATCAGGCGGCGGCGGCGGTGCCGGTGTCGACGGTGGTGCGTTTGACC
CTCGGGCCGCCGGCCGTGGCGGTGGACGGAAAGACGATGGCGTCGGCGGC
GGCATGAGCCACCTGCTGACGCAACCCGGCGCCGCCATCAAGAAGGCGGC
CGGGCAAGGGGTCGCATGGCTGACGGAAGCGCTCGCGAAGATCAAGTCGG
CGGCAGAAGACAGCGCTTACGCGGCCTCCCGTCCTCGCCATTGGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14080:640..3436-

>mRNA_Ecto-sp13_S_contig14080.3190.1 ID=mRNA_Ecto-sp13_S_contig14080.3190.1|Name=mRNA_Ecto-sp13_S_contig14080.3190.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=807bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14080:640..3436- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACGAGTTCCTCCGGGTGGGGCACAGCATCACCTCTGTCGACCGCAA
GTTCACGGCGGTCTTGGAGAGCGACTGCAACCTGGTGGTCTACCACTTGA
GAGGAGGGGGGAAGAAGGTCAGGGTGTGGGAGACCTCGTCGTTCTCTCCG
GAGGGGCGGTGCTTCGTCGCTATCCAGGATAACGGCATGCTGGTCGTCAT
GGCCGGGAACGATCCGAGCGCACCCGGGAACGTTCTTTGGAGCAATAACC
AAGCGCACGTGGGTTGGTTCAGGCAGAACTCATTCCACGCCGCGGTTCTC
CCGAGCGGCAATTTGGTGGTATCTCAAGGGGATTCGCCCATGCACCCAGC
CGCTCGGCGCTGCGTCTGGGGGGCGTTTGGGTGTCCGGGTGACGGGGGCG
TGATGGAATGGAAGCTGGTGTGGATGTCGTTCAGGACCAAGGCTGGCGAC
ATGTGGTGCAAGGTGAAGGGATGCGACGGAGCGGGAGAGAACTCTTACGA
CAGCGACAACGGAGAAAACTCTGGCGGTAACGAGACCCGCGATTCTTCCG
CTTGGAAGTGGCAATCAGGCGGCGGCGGCGGTGCCGGTGTCGACGGTGGT
GCGTTTGACCCTCGGGCCGCCGGCCGTGGCGGTGGACGGAAAGACGATGG
CGTCGGCGGCGGCATGAGCCACCTGCTGACGCAACCCGGCGCCGCCATCA
AGAAGGCGGCCGGGCAAGGGGTCGCATGGCTGACGGAAGCGCTCGCGAAG
ATCAAGTCGGCGGCAGAAGACAGCGCTTACGCGGCCTCCCGTCCTCGCCA
TTGGTAG
back to top