mRNA_Ecto-sp13_S_contig14078.3185.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14078.3185.1
Unique NamemRNA_Ecto-sp13_S_contig14078.3185.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14078.3185.1 vs. uniprot
Match: A0A1Z5JAK4_FISSO (Chloride channel protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JAK4_FISSO)

HSP 1 Score: 159 bits (402), Expect = 2.760e-43
Identity = 83/99 (83.84%), Postives = 88/99 (88.89%), Query Frame = 1 
Query:    1 LFHFRESGRREISTFSSGALFVFFVPYTIMGCLTYGIAVPSGLFVPSLLSGAAFGRLCGHLLHKLDDASGTFADSGTYALIGAAACLGGMARMTISLTV 297
            LFHFRE+G  ++STFSSGALF FFVPY  M  +TYGIAVPSGLFVPSLLSGAAFGRL GHLLHKLD  +GTFADSGTYALIGAAA LGGMARMTISLTV
Sbjct:  513 LFHFREAGASDMSTFSSGALFFFFVPYIAMATITYGIAVPSGLFVPSLLSGAAFGRLVGHLLHKLDHTNGTFADSGTYALIGAAAVLGGMARMTISLTV 611
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BLAST of mRNA_Ecto-sp13_S_contig14078.3185.1 vs. uniprot
Match: A0A7S2CPI8_9STRA (Chloride channel protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CPI8_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.430e-40
Identity = 76/99 (76.77%), Postives = 85/99 (85.86%), Query Frame = 1 
Query:    1 LFHFRESGRREISTFSSGALFVFFVPYTIMGCLTYGIAVPSGLFVPSLLSGAAFGRLCGHLLHKLDDASGTFADSGTYALIGAAACLGGMARMTISLTV 297
            LFHFRE G  +  TFS+GALF+F+  YT M C+TYG+AVPSGLFVPSLLSGAA GR CGH+LHKLD +SGTFADSGTYAL+GAAA LGGMARMTISL V
Sbjct:  160 LFHFREIGENDQHTFSAGALFLFWSLYTAMACITYGLAVPSGLFVPSLLSGAAMGRFCGHVLHKLDGSSGTFADSGTYALVGAAAGLGGMARMTISLAV 258
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BLAST of mRNA_Ecto-sp13_S_contig14078.3185.1 vs. uniprot
Match: A0A7S2UST4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UST4_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.180e-39
Identity = 74/99 (74.75%), Postives = 80/99 (80.81%), Query Frame = 1 
Query:    1 LFHFRESGRREISTFSSGALFVFFVPYTIMGCLTYGIAVPSGLFVPSLLSGAAFGRLCGHLLHKLDDASGTFADSGTYALIGAAACLGGMARMTISLTV 297
            LFHFRE G  ++ TFSSGALFVFF+PY  + C TYG+ VPSGLFVP LLSGAAFGRL GHLLHKLD+ASGTFADSG       AA LGGMARMTISLTV
Sbjct:  143 LFHFREGGEADVQTFSSGALFVFFLPYICLACWTYGLGVPSGLFVPCLLSGAAFGRLFGHLLHKLDNASGTFADSGXXXXXXXAAVLGGMARMTISLTV 241
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BLAST of mRNA_Ecto-sp13_S_contig14078.3185.1 vs. uniprot
Match: A0A7S3NPJ8_9STRA (Chloride channel protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NPJ8_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.310e-39
Identity = 78/101 (77.23%), Postives = 87/101 (86.14%), Query Frame = 1 
Query:    1 LFHFRESGR--REISTFSSGALFVFFVPYTIMGCLTYGIAVPSGLFVPSLLSGAAFGRLCGHLLHKLDDASGTFADSGTYALIGAAACLGGMARMTISLTV 297
            LFHFRE G    ++ TFSS A+F F++PYT++ CLTYGIAVPSGLFVPSLLSGAA GRL GHLLH+LD  SGTFADSGTYAL+GAAA LGGMARMTISLTV
Sbjct:  512 LFHFREVGNFDDDVETFSSVAVFAFYIPYTMLACLTYGIAVPSGLFVPSLLSGAAMGRLVGHLLHRLDAQSGTFADSGTYALVGAAAGLGGMARMTISLTV 612
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BLAST of mRNA_Ecto-sp13_S_contig14078.3185.1 vs. uniprot
Match: A0A7S2WR56_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WR56_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.520e-39
Identity = 72/99 (72.73%), Postives = 80/99 (80.81%), Query Frame = 1 
Query:    1 LFHFRESGRREISTFSSGALFVFFVPYTIMGCLTYGIAVPSGLFVPSLLSGAAFGRLCGHLLHKLDDASGTFADSGTYALIGAAACLGGMARMTISLTV 297
            LFHF+E G     TFSS AL +FF+PY  M    YGIA+PSGLFVPSLLSGAAFGRL GHLL K+ + +GTFADSGTYAL+GAAA LGGMARMTISLTV
Sbjct:   83 LFHFQEDGSNNSRTFSSAALVIFFLPYITMATFVYGIAIPSGLFVPSLLSGAAFGRLFGHLLQKISNNNGTFADSGTYALMGAAAVLGGMARMTISLTV 181
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BLAST of mRNA_Ecto-sp13_S_contig14078.3185.1 vs. uniprot
Match: A0A7S2XUS9_9STRA (Chloride channel protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUS9_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.900e-39
Identity = 77/100 (77.00%), Postives = 86/100 (86.00%), Query Frame = 1 
Query:    1 LFHFRESG-RREISTFSSGALFVFFVPYTIMGCLTYGIAVPSGLFVPSLLSGAAFGRLCGHLLHKLDDASGTFADSGTYALIGAAACLGGMARMTISLTV 297
            LFHFRE G  +EI TF S ALF+FF+PY  + C TYG+ VPSGLFVP LLSGA+FGRL GHLLHKLD+A+GTFADSGTYAL+GAAA LGGMARMTISLTV
Sbjct:  274 LFHFREGGGTKEIMTFGSSALFMFFLPYLALSCWTYGLNVPSGLFVPCLLSGASFGRLFGHLLHKLDNANGTFADSGTYALMGAAAVLGGMARMTISLTV 373
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BLAST of mRNA_Ecto-sp13_S_contig14078.3185.1 vs. uniprot
Match: A0A7R9U7Y3_9STRA (Chloride channel protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7Y3_9STRA)

HSP 1 Score: 148 bits (373), Expect = 2.430e-39
Identity = 77/99 (77.78%), Postives = 84/99 (84.85%), Query Frame = 1 
Query:    1 LFHFRESGRREISTFSSGALFVFFVPYTIMGCLTYGIAVPSGLFVPSLLSGAAFGRLCGHLLHKLDDASGTFADSGTYALIGAAACLGGMARMTISLTV 297
            LFHFRESG  E +TFSSGAL +FF PY IMGC+TYG+AVPSGLFVPSLLSGAAFGRL GHL+H+LDD+SGTFADSG       AA LGGMARMTISLTV
Sbjct:  497 LFHFRESGDDENNTFSSGALLLFFFPYIIMGCVTYGLAVPSGLFVPSLLSGAAFGRLIGHLMHRLDDSSGTFADSGXXXXXXXAAVLGGMARMTISLTV 595
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BLAST of mRNA_Ecto-sp13_S_contig14078.3185.1 vs. uniprot
Match: F0Y0N4_AURAN (Chloride channel protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0N4_AURAN)

HSP 1 Score: 145 bits (367), Expect = 1.350e-38
Identity = 77/101 (76.24%), Postives = 87/101 (86.14%), Query Frame = 1 
Query:    1 LFHFRESG--RREISTFSSGALFVFFVPYTIMGCLTYGIAVPSGLFVPSLLSGAAFGRLCGHLLHKLDDASGTFADSGTYALIGAAACLGGMARMTISLTV 297
            LFHFRESG   +++ TFSS A+  F+VPY ++ CLTYGIAVPSGLFVPSLLSGAA GRL GHLLH+LD  SGTFAD+GTYAL+GAAA LGGMARMTISLTV
Sbjct:  402 LFHFRESGVFNQDVETFSSLAVATFYVPYFLLACLTYGIAVPSGLFVPSLLSGAALGRLVGHLLHRLDAQSGTFADAGTYALVGAAAGLGGMARMTISLTV 502
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BLAST of mRNA_Ecto-sp13_S_contig14078.3185.1 vs. uniprot
Match: A0A7S2B9U1_9STRA (Chloride channel protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B9U1_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.780e-38
Identity = 75/99 (75.76%), Postives = 81/99 (81.82%), Query Frame = 1 
Query:    1 LFHFRESGRREISTFSSGALFVFFVPYTIMGCLTYGIAVPSGLFVPSLLSGAAFGRLCGHLLHKLDDASGTFADSGTYALIGAAACLGGMARMTISLTV 297
            LFH  + G    STFSSGALF+FF+PYTIM C+ YG+AVPSGLFVPSLLSGAAFGRL GHLLHKLD  SGTFADS     IGAA+ LGGMARMTISLTV
Sbjct:   53 LFHSPDRGINGASTFSSGALFLFFLPYTIMACINYGVAVPSGLFVPSLLSGAAFGRLFGHLLHKLDGESGTFADSXXXXXIGAASVLGGMARMTISLTV 151
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BLAST of mRNA_Ecto-sp13_S_contig14078.3185.1 vs. uniprot
Match: A0A7S1D5H2_CYCTE (Chloride channel protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D5H2_CYCTE)

HSP 1 Score: 140 bits (353), Expect = 1.320e-37
Identity = 74/99 (74.75%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:    1 LFHFRESGRREISTFSSGALFVFFVPYTIMGCLTYGIAVPSGLFVPSLLSGAAFGRLCGHLLHKLDDASGTFADSGTYALIGAAACLGGMARMTISLTV 297
            LFHFRE+G  + STFSS ALF+FFVPY  +  +TYGIAVPSGLFVPSLLSGAAFGRLCGHLLHKLD  SGTFADSG          LGGMARMTISLTV
Sbjct:   86 LFHFREAGADDSSTFSSAALFLFFVPYIALASITYGIAVPSGLFVPSLLSGAAFGRLCGHLLHKLDHTSGTFADSGXXXXXXXXXXLGGMARMTISLTV 184
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14078.3185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Z5JAK4_FISSO2.760e-4383.84Chloride channel protein n=2 Tax=Fistulifera solar... [more]
A0A7S2CPI8_9STRA1.430e-4076.77Chloride channel protein n=2 Tax=Dictyocha speculu... [more]
A0A7S2UST4_9STRA1.180e-3974.75Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3NPJ8_9STRA1.310e-3977.23Chloride channel protein n=1 Tax=Aureoumbra lagune... [more]
A0A7S2WR56_9STRA1.520e-3972.73Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S2XUS9_9STRA1.900e-3977.00Chloride channel protein n=1 Tax=Fibrocapsa japoni... [more]
A0A7R9U7Y3_9STRA2.430e-3977.78Chloride channel protein n=1 Tax=Pinguiococcus pyr... [more]
F0Y0N4_AURAN1.350e-3876.24Chloride channel protein n=1 Tax=Aureococcus anoph... [more]
A0A7S2B9U1_9STRA1.780e-3875.76Chloride channel protein n=1 Tax=Dictyocha speculu... [more]
A0A7S1D5H2_CYCTE1.320e-3774.75Chloride channel protein n=1 Tax=Cyclophora tenuis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14078contigEcto-sp13_S_contig14078:222..1313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score159.1
Seed ortholog evalue1.1e-36
Seed eggNOG ortholog2850.Phatr52412
Preferred nameCLCN7
Model size297
KEGG koko:K05015,ko:K05016
KEGG TC2.A.49.3.3,2.A.49.3.4
Hectar predicted targeting categorysignal anchor
GOsGO:0000323,GO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005247,GO:0005253,GO:0005254,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0006884,GO:0007039,GO:0007154,GO:0007165,GO:0007600,GO:0008150,GO:0008152,GO:0008308,GO:0008361,GO:0008509,GO:0009056,GO:0009057,GO:0009268,GO:0009605,GO:0009612,GO:0009628,GO:0009987,GO:0010008,GO:0012505,GO:0015075,GO:0015103,GO:0015108,GO:0015267,GO:0015291,GO:0015297,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0016043,GO:0019538,GO:0019725,GO:0022803,GO:0022804,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0023052,GO:0030163,GO:0031090,GO:0031224,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032535,GO:0034220,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0050975,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090066,GO:0097708,GO:0098588,GO:0098656,GO:0098660,GO:0098661,GO:0098805,GO:0098852,GO:1901564,GO:1901565,GO:1901575,GO:1902476,GO:1905146
Exons2
EggNOG free text desc.chloride channel
EggNOG OGs2XAQC@2836,COG0038@1,KOG0474@2759
Cds size297
COG Functional cat.P
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462752.2683191-CDS-Ecto-sp13_S_contig14078:221..3841681462752.2683191-CDS-Ecto-sp13_S_contig14078:221..384Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14078 222..384 +
1681462752.278604-CDS-Ecto-sp13_S_contig14078:1179..13131681462752.278604-CDS-Ecto-sp13_S_contig14078:1179..1313Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14078 1180..1313 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14078.3185.1prot_Ecto-sp13_S_contig14078.3185.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14078 222..1313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14078.3185.1

>prot_Ecto-sp13_S_contig14078.3185.1 ID=prot_Ecto-sp13_S_contig14078.3185.1|Name=mRNA_Ecto-sp13_S_contig14078.3185.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=99bp
LFHFRESGRREISTFSSGALFVFFVPYTIMGCLTYGIAVPSGLFVPSLLS
GAAFGRLCGHLLHKLDDASGTFADSGTYALIGAAACLGGMARMTISLTV
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mRNA from alignment at Ecto-sp13_S_contig14078:222..1313+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14078.3185.1 ID=mRNA_Ecto-sp13_S_contig14078.3185.1|Name=mRNA_Ecto-sp13_S_contig14078.3185.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1092bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14078:222..1313+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGTTCCACTTCCGAGAATCCGGACGTCGCGAGATCTCTACCTTCTCTTC
GGGGGCTTTGTTCGTCTTCTTCGTGCCCTACACCATCATGGGCTGTCTCA
CCTACGGCATCGCGGTCCCCAGCGGTCTGTTCGTGCCCTCACTTCTCTCC
GGCGCGGCCTTCGGTAAGCTACGCACGGGTTGCAGCGCCTCGTACGTGTG
TTGTGGTACGGCTTAGCGACCGACGTGGCTCAACGTTCTCTTTTGTTTTT
GCCGGCCTTTCGTGACCTTTCGCCTCGTTATTGGGTGTTGCGGCGTTTAT
GACTGCGCGACCAATTTAGTTTGACGGGGAGTTTTTGACGAGGTCGATCG
AACATTCGGTAAGCTAGAATAACTTGCAGCTCATCACCTGTGTGTTGCAG
TATGGTTACCCGGCCAGCTTGGCTTGACATGTTTGTTTGTCGAGGTCGAT
TGAATATTCGGTGAGCTAGTTGCAGCTCCTCATGCGTGTGTAGTACTGTG
TGCATGACTGCGTGACCAACTTGGCTTGACGTTTATTTTTTGTCGAGGTC
GATTGGACATTCGATTCGCTCAGAGCACCTCTTGCGCGTGTTCGGTATGA
CTGCGTGACAAAAACCGGCTTGATTTTTGTTGTTGTCGCCTGTCGTCGGT
GAGCGTGCAGCACGTCATGTGTATGGTTTTTTTTTTCGATGTGGCTGCGT
GGCCAACTTGACTTTGTCACCCTCGACAACACCATGGGCAATACTTGTGA
TGACAACAACAAACACCACCTTCGACTGTGGTTATATCTCTAACGGTGTA
GTCTTTTTTTTCTTTTTGTTGTATTTTCTTTAACATGAGTTTATCCCATA
CACACCCCGCAACCCTTCATTGCCCATAAGTTAATCCCATACACACCTAA
CATTTAGCCCATTATTTAATTATTTCCATACACATGCATCATATTGCCCT
TTCCGCAGGGCGGCTTTGCGGGCACCTGTTGCACAAGCTGGACGACGCCT
CGGGGACCTTCGCGGACAGCGGCACCTACGCGCTAATCGGGGCCGCGGCG
TGCCTGGGGGGTATGGCTCGCATGACCATCTCGCTCACCGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14078:222..1313+

>mRNA_Ecto-sp13_S_contig14078.3185.1 ID=mRNA_Ecto-sp13_S_contig14078.3185.1|Name=mRNA_Ecto-sp13_S_contig14078.3185.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14078:222..1313+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGTTCCACTTCCGAGAATCCGGACGTCGCGAGATCTCTACCTTCTCTTC
GGGGGCTTTGTTCGTCTTCTTCGTGCCCTACACCATCATGGGCTGTCTCA
CCTACGGCATCGCGGTCCCCAGCGGTCTGTTCGTGCCCTCACTTCTCTCC
GGCGCGGCCTTCGGGCGGCTTTGCGGGCACCTGTTGCACAAGCTGGACGA
CGCCTCGGGGACCTTCGCGGACAGCGGCACCTACGCGCTAATCGGGGCCG
CGGCGTGCCTGGGGGGTATGGCTCGCATGACCATCTCGCTCACCGTG
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