mRNA_Ecto-sp13_S_contig14060.3167.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14060.3167.1
Unique NamemRNA_Ecto-sp13_S_contig14060.3167.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14060.3167.1 vs. uniprot
Match: A0A6H5J9R9_9PHAE (Pribosyltran_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9R9_9PHAE)

HSP 1 Score: 432 bits (1112), Expect = 4.720e-149
Identity = 224/230 (97.39%), Postives = 225/230 (97.83%), Query Frame = 1
Query:    7 AADVGRLLEVMGVDRVIAVDLERPGTGSGGAFLGPGIPVETLLTTNIFAEHIAERILGKDKSHQRG-----PSSGLVKKAIQFKRKLREYVDDVRVQTFLHARPNSGPVDVSSNELMGNIGEVKGRDVVIVDELIDTGGTLAALPRRLKKAGAMNIYVCSSHGLFNANAVAILEESPVDTVFVTNSVPLPEGCKSKKIEQLHIGRYLARMIFAEHVRSADLFKEDDIVFE 681
            +ADVGRLLEVMGVDRVIAVDLERPGTGSGGAFLGPGIPVETLLTTNIFAEHIAERILGKDKSHQRG     PSSGLVKKAIQFKRKLREYVDDVRVQTFLHARPNSGPVDVSSNELMGNIGEVKGRDVVIVDELIDTGGTLAALPRRLKKAGAMNIYVCSSHGLFNANAVAILEESPVDTVFVTNSVPLPEGCKSKKIEQLHIGRYLARMIFAEHVRSADLFKEDDIVFE
Sbjct:  258 SADVGRLLEVMGVDRVIAVDLERPGTGSGGAFLGPGIPVETLLTTNIFAEHIAERILGKDKSHQRGVTVISPSSGLVKKAIQFKRKLREYVDDVRVQTFLHARPNSGPVDVSSNELMGNIGEVKGRDVVIVDELIDTGGTLAALPRRLKKAGAMNIYVCSSHGLFNANAVAILEESPVDTVFVTNSVPLPEGCKSKKIEQLHIGRYLARMIFAEHVRSADLFKEDDIVFE 487          
BLAST of mRNA_Ecto-sp13_S_contig14060.3167.1 vs. uniprot
Match: D7FX99_ECTSI (Pribosyltran_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX99_ECTSI)

HSP 1 Score: 392 bits (1007), Expect = 2.790e-134
Identity = 206/225 (91.56%), Postives = 206/225 (91.56%), Query Frame = 1
Query:    7 AADVGRLLEVMGVDRVIAVDLERPGTGSGGAFLGPGIPVETLLTTNIFAEHIAERILGKDKSHQRGPSSGLVKKAIQFKRKLREYVDDVRVQTFLHARPNSGPVDVSSNELMGNIGEVKGRDVVIVDELIDTGGTLAALPRRLKKAGAMNIYVCSSHGLFNANAVAILEESPVDTVFVTNSVPLPEGCKSKKIEQLHIGRYLARMIFAEHVRSADLFKEDDIVFE 681
            AADVGRLLEVMGVDRVIAVDLERPGTGSGGAFLGPGIPVETLLTTNIF                  PSSGLVKKAIQFKRKLREYVDDVRVQTFLHARPNSGPVDVSSNELMGNIGEVKGRDVVIVDELIDTGGTL ALPRRLKKAGAMNIYVCSSHGLFNANAVAILEESPVDTVFVTNSVPLPEGCKSKKIEQLHIGRYLARMIFAEHVRSADLFKEDDIVFE
Sbjct:  200 AADVGRLLEVMGVDRVIAVDLERPGTGSGGAFLGPGIPVETLLTTNIF------------------PSSGLVKKAIQFKRKLREYVDDVRVQTFLHARPNSGPVDVSSNELMGNIGEVKGRDVVIVDELIDTGGTLGALPRRLKKAGAMNIYVCSSHGLFNANAVAILEESPVDTVFVTNSVPLPEGCKSKKIEQLHIGRYLARMIFAEHVRSADLFKEDDIVFE 406          
BLAST of mRNA_Ecto-sp13_S_contig14060.3167.1 vs. uniprot
Match: A0A835Z4X7_9STRA (N-terminal domain of ribose phosphate pyrophosphokinase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4X7_9STRA)

HSP 1 Score: 219 bits (558), Expect = 1.580e-66
Identity = 120/229 (52.40%), Postives = 159/229 (69.43%), Query Frame = 1
Query:    1 NTAADVGRLLEVMGVDRVIAVDLERPGTGSGGAFLGPGIPVETLLTTNIFAEHIAERILGKDKSHQR---GPSSGLVKKAIQFKRKLREYVD--DVRVQTFLHARPNSGPVDVSSNELMGNIGEVKGRDVVIVDELIDTGGTLAALPRRLKKAGAMNIYVCSSHGLFNANAVAILEESPVDTVFVTNSVPLPEGC--KSKKIEQLHIGRYLARMIFAEHVRSADLFKED 666
            + AAD G  LEVMGVDR+IAVDLERPG+ +   F  PG+PVETLLTTN+FA HIA                PSS L+KK++ F   L   +   DVRV TF+H+   +GPVD+S+NEL+ + G+V+GRDVV+VDELIDTGGTLA L R+LK+ GA +IYV SSH LFN + + +LE +P+  V+V+N++         S K+E + IG  LA++I+AEHVRSAD+FKE+
Sbjct:  165 SAAADFGHCLEVMGVDRIIAVDLERPGSSNESNFFSPGVPVETLLTTNLFAHHIARAAFPPAHGGDILVVSPSSALMKKSVGFATVLARALPNADVRVTTFVHSTARAGPVDISTNELIAS-GDVRGRDVVLVDELIDTGGTLATLARKLKEMGARDIYVYSSHALFNNDCLELLERAPITRVYVSNTIEHDPAAVAASSKVEVVSIGPQLAKLIYAEHVRSADIFKEE 392          
BLAST of mRNA_Ecto-sp13_S_contig14060.3167.1 vs. uniprot
Match: A0A7S0SUR5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SUR5_9STRA)

HSP 1 Score: 171 bits (434), Expect = 5.130e-48
Identity = 92/216 (42.59%), Postives = 140/216 (64.81%), Query Frame = 1
Query:    1 NTAADVGRLLEVMGVDRVIAVDLERPGTGSGGAFLGPGIPVETLLTTNIFAEHIAERILGKDKSHQRGPSSGLVKKAIQFKRKLRE-YVDDVRVQTFLHARPNSGPVDVSSNELMGNIGEVKGRDVVIVDELIDTGGTLAALPRRLKKAGAMNIYVCSSHGLFNANAVAILEESPVDTVFVTNSVPLPEGCKSKKIEQLHIGRYLARMIFAEHVRS 645
            ++  D  ++LE MG+DRVIAVDL+RPG G    F    IP+ET++TT+    H+   I  ++      P++  VKKA  F+  L++ +  DV++  +      SGP D+S ++++GN   ++G DVVIVD++IDT GTLA L  +LK  GA NIYV +SHGLF  N++ +++ SPV+ V VTN++PLP+   S K+EQ+ I + +A ++ AEH RS
Sbjct:  174 SSPVDFAKMLESMGIDRVIAVDLQRPGQGHEACFFDNTIPLETIITTDHMVSHLINNIPLQNPIVVVAPNAECVKKARSFQIGLQKVFKSDVQLAIYTSNESGSGPADISQSKMLGNT-RIEGADVVIVDDMIDTAGTLATLSNKLKLLGAKNIYVVASHGLFTKNSMNLIDSSPVNQVIVTNTLPLPKE-SSSKVEQVSIAQMVAHVVLAEHFRS 387          
BLAST of mRNA_Ecto-sp13_S_contig14060.3167.1 vs. uniprot
Match: A0A6T5N5G5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5N5G5_HETAK)

HSP 1 Score: 171 bits (433), Expect = 1.610e-47
Identity = 101/228 (44.30%), Postives = 150/228 (65.79%), Query Frame = 1
Query:    1 NTAADVGRLLEVMGVDRVIAVDLERPGTGSGGAFLGPGIPVETLLTTNIFAEHIAERILGKDKSHQRGPSSGLVKKAIQFKRKLREYV-DDVRVQTFLHARPNSGPVDVSSN--ELMGNIGEVKGRDVVIVDELIDTGGTLAALPRRLKKAGAMNIYVCSSHGLFNANAVAILEESPVDTVFVTNSVPLPEGCKSK-KIEQLHIGRYLARMIFAEHVRSADLFKEDDI 672
            + ++D  ++LEV+GVDRVIAVDL+RPG G    F  P IPVET++TT + A+++A+R+          P+S  +KKA +F+ K R+ V     +  FL  + +SGPV  +S   E MG   +V+G+DVVIV++L+DTG T   + R+L+ AGA +IYVC+SHGLF   ++  L ES V  V V N++PLPEG   +  +EQ+ IG++LA++I  EH+RS D   +DD+
Sbjct:  201 SASSDFAKMLEVVGVDRVIAVDLQRPGQGHEACFFSPQIPVETIMTTEMAAKYMAKRMHFPRPVCVVAPNSETIKKARKFELKFRKRVLVPTSLGAFLPKQASSGPVAPTSKAFEFMG---DVEGKDVVIVEDLVDTGATCVEMARQLRAAGAADIYVCASHGLFGPGSIERLRESGVKKVVVLNTLPLPEGQDWQGMVEQIPIGKWLAQLIKTEHLRSNDF--DDDL 423          
BLAST of mRNA_Ecto-sp13_S_contig14060.3167.1 vs. uniprot
Match: A0A812Y9R1_SYMMI (Prs protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y9R1_SYMMI)

HSP 1 Score: 132 bits (333), Expect = 2.550e-33
Identity = 73/229 (31.88%), Postives = 136/229 (59.39%), Query Frame = 1
Query:    1 NTAADVGRLLEVMGVDRVIAVDLERPGTGSGGAFLGPGIPVETLLTTNIFAEHIAERILGKDKSHQRGPSSGLVKKAIQFKRKLR--EYVDDVRVQTFLHARPNSGPVDVSSNELMGNIGEVKGRDVVIVDELIDTGGTLAALPRRLKKAGAMNIYVCSSHGLFNANAVAILEESPVDTVFVTNSVPLPEGCKSKKIEQLHIGRYLARMIFAEHVRSADLFKEDDIVFE 681
            + + D  +++ VMGVDR+I+VDL RPG G    F    +PVET+ +++   + +   +   +       +   +KKA +++  +   + V +V V  F+  R   G     S +++  +G+V+  DV++VD+++DTG +L+ +   L++ GA  +Y+C+SHG+F+AN++ ++  SPV+ VFVT+S+PLP    +K + Q+ +   LA++I  E+  S    +ED+ V+E
Sbjct:  152 SASGDFSKMMNVMGVDRIISVDLHRPGQGQETCFFDASVPVETVSSSDAVVKALLSSVRLHENVTVVAANPDFIKKARKYQMGISGTDGVKNVAVAAFM--RKCDGSEVRMSRDVVRLLGDVRDSDVIVVDDVVDTGASLSNICHALRQYGARKVYICASHGMFSANSMQLIRLSPVEKVFVTDSLPLPPDADAKVV-QVSMASTLAKLIETEYFTSIMFRQEDEEVYE 377          
BLAST of mRNA_Ecto-sp13_S_contig14060.3167.1 vs. uniprot
Match: A0A6T5V9R8_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A6T5V9R8_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.470e-32
Identity = 78/237 (32.91%), Postives = 138/237 (58.23%), Query Frame = 1
Query:    1 NTAADVGRLLEVMGVDRVIAVDLERPGTGSGGAFLGPGIPVETLLTTNIFAEHIAERILGKDKSHQR----------GPSSGLVKKAIQFKRKLREYVDDVRVQTFLHARPNSGPVDVSSNELMGN---IGEVKGRDVVIVDELIDTGGTLAALPRRLKKAGAMNIYVCSSHGLFNANAVAILEESPVDTVFVTNSVPLPEGCKSKKIEQLHIGRYLARMIFAEHVRSADLFKEDDI 672
            + A+D  ++L ++GVD+VI+VDL++ G G    F    IPVE + + + F ++I  ++L    ++++           P++  +KKA + +  L++   +  + T +         +  +N L GN   +G+VK  DV+IVD+ IDT  +LA L R LKK GA  +++C+SHGLF   ++ +++ SPV+ V VT+SVPLP+G  S KI Q+ I   +A+++ +E + S  ++  + I
Sbjct:  156 SAASDFAKMLRILGVDKVISVDLQKSGQGHESCFFDNTIPVENISSIDSFVDYINNQLLIDPTNNKKKQITNKLVIVSPNTEYIKKAKKLELLLKQSHSNRHIDTAVILD------NTHTNRLEGNAEIVGDVKDADVIIVDDFIDTATSLAILCRLLKKEGARRVFICASHGLFTQTSMELIDLSPVEKVIVTDSVPLPKG-SSNKIVQISIAPLIAKILESEAITSNAIWDSERI 385          
BLAST of mRNA_Ecto-sp13_S_contig14060.3167.1 vs. uniprot
Match: A0A812VS40_SYMMI (Prs protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VS40_SYMMI)

HSP 1 Score: 126 bits (316), Expect = 8.830e-32
Identity = 73/217 (33.64%), Postives = 120/217 (55.30%), Query Frame = 1
Query:    1 NTAADVGRLLEVMGVDRVIAVDLERPGTGSGGAFLGPGIPVETLLTTNIFAEHIAERILGKDKSHQRGPSSGLVKKAIQFKRKLREYV--DDVRVQTFLHARPNSGPVDVSSNELMGNIGEVKGRDVVIVDELIDTGGTLAALPRRLKKAGAMNIYVCSSHGLFNANAVAILEESPVDTVFVTNSVPLPEGCKSKKIEQLHIGRYLARMIFAEHVRS 645
            + A D  ++LE MG D V+ VDL+RPG G    F    IP+E ++TT + +++  +    K       P+   + KA++++ + RE      V +   +H   ++        EL G + EV    VVIVD+++D+G T++ +  R+K  GA  ++V +SHG+F   A+A ++ SP++ V VTNS+P P    S K+ Q+ I   LAR I+ EH +S
Sbjct:   47 SVAMDFAKMLEEMGTDAVLTVDLQRPGQGQEACFFDNSIPLENIVTTKLISDYFVDTFPLKGNIVVISPNYECLNKAMKYETRFREGYPGSSVSLNALIHGGVSAHKQSTDLEEL-GKL-EVADAHVVIVDDIVDSGETISYIANRVKAEGAKRVFVVASHGVFTDTAMATIDRSPIEKVMVTNSLP-PVNSTSNKVVQVSIAPLLARAIWTEHFKS 260          
BLAST of mRNA_Ecto-sp13_S_contig14060.3167.1 vs. uniprot
Match: K3WJY3_GLOUD (Pribosyltran_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJY3_GLOUD)

HSP 1 Score: 128 bits (322), Expect = 1.730e-31
Identity = 79/218 (36.24%), Postives = 129/218 (59.17%), Query Frame = 1
Query:    1 NTAADVGRLLEVMGVDRVIAVDLERPGTGSGGAFLGPGIPVETLLTTNIFAEHIAERILGKDKSHQRGPSSGLVKKAIQFKRKLREYVDDV--RVQTFLHARPNSGPVDVSSNELMGNIGEVKGRDVVIVDELIDTGGTLAALPRRLKKAGAMNIYVCSSHGLFNANAVAILEESPVDTVFVTNSVPL-PEGCKSKKIEQLHIGRYLARMIFAEHVRS 645
            + AAD+ ++LEVMGVDRVIAVDL+    G   +F    +PVETL T     E+ A ++  +       P+   +++A  F+  L +++ D   R   F+H   N+G  D +  ++   +G+VKG DV+IVD++ID+G TL+ L + +   GA  +Y  +SH L   +A  I++ESP+  V V +++P  P+G  S+KI++L +   LA +I AEH ++
Sbjct:  181 SPAADIAKMLEVMGVDRVIAVDLQLRMQGHEASFFSSNVPVETLETIMAGVEYFATQVHLRRPLVVMAPNPECLRRARVFQAGLNKWLPDAPARFAAFVHGTGNNG--DYTEADV---VGDVKGADVIIVDDMIDSGETLSKLTKLVLNKGARKVYCFASHPLLAGDAEKIIDESPLAEVVVMDTIPQSPKGFHSEKIKRLSVAPMLAELIQAEHFKA 393          
BLAST of mRNA_Ecto-sp13_S_contig14060.3167.1 vs. uniprot
Match: A0A067C1X5_SAPPC (Pribosyltran_N domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C1X5_SAPPC)

HSP 1 Score: 127 bits (320), Expect = 3.740e-31
Identity = 80/215 (37.21%), Postives = 124/215 (57.67%), Query Frame = 1
Query:    1 NTAADVGRLLEVMGVDRVIAVDLERPGTGSGGAFLGPGIPVETLLTTNIFAEHIAERILGKDKSHQRGPSSGLVKKAIQFKRKLREYVDDVRVQTFLHARPNSGPVDVSSNELMGNIGEVKGRDVVIVDELIDTGGTLAALPRRLKKAGAMNIYVCSSHGLFNANAVAILEESPVDTVFVTNSVPL-PEGCKSKKIEQLHIGRYLARMIFAEHVR 642
            + A D+ ++LEVMGVDRVIAVDL+  G G   +F    IPVETL T     E+ A ++  K       P+   VKKA  F+R L++++ D+ + TF  A    G  D    + +  +G+VKG +V++VD+++DT GTL  L   +K+ GA   +  +SH L   NA   +E+S V  V V +++P+ P+   S K+++L +   LA +I AEH +
Sbjct:  187 SPAQDIAKMLEVMGVDRVIAVDLQLRGQGHEASFFNAHIPVETLDTVMAGVEYFATQVFFKGPIVVLAPNPECVKKARVFQRGLKKWLPDIPI-TF--ASCIRGGADGDKPDEIQLVGDVKGAEVIVVDDMVDTSGTLCKLAAIVKEQGARRSFCLASHPLMTGNAEEDIEKSAVAEVVVMDTIPMDPKRFHSDKVKRLSVAPMLAELIQAEHFK 398          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14060.3167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9R9_9PHAE4.720e-14997.39Pribosyltran_N domain-containing protein n=1 Tax=E... [more]
D7FX99_ECTSI2.790e-13491.56Pribosyltran_N domain-containing protein n=1 Tax=E... [more]
A0A835Z4X7_9STRA1.580e-6652.40N-terminal domain of ribose phosphate pyrophosphok... [more]
A0A7S0SUR5_9STRA5.130e-4842.59Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A6T5N5G5_HETAK1.610e-4744.30Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A812Y9R1_SYMMI2.550e-3331.88Prs protein n=1 Tax=Symbiodinium microadriaticum T... [more]
A0A6T5V9R8_9STRA1.470e-3232.91Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A812VS40_SYMMI8.830e-3233.64Prs protein n=1 Tax=Symbiodinium microadriaticum T... [more]
K3WJY3_GLOUD1.730e-3136.24Pribosyltran_N domain-containing protein n=1 Tax=G... [more]
A0A067C1X5_SAPPC3.740e-3137.21Pribosyltran_N domain-containing protein n=4 Tax=S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14060contigEcto-sp13_S_contig14060:375..3861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score394.0
Seed ortholog evalue4.6e-107
Seed eggNOG ortholog2880.D7FX99
Model size684
KEGG rclassRC00002,RC00078
KEGG koko:K00948,ko:K14638
KEGG TC2.A.17.3
KEGG ReactionR01049
KEGG Pathwayko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00005
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Exons5
EggNOG free text desc.ribose phosphate diphosphokinase activity
EggNOG OGsCOG0462@1,KOG1448@2759
Ec32 ortholog descriptionRibose-phosphate diphosphokinase
Ec32 orthologEc-26_004100.1
EC2.7.6.1
Cds size684
COG Functional cat.EF
BiGG ReactioniRC1080.CRv4_Au5_s8_g15040_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462751.069207-CDS-Ecto-sp13_S_contig14060:374..5781681462751.069207-CDS-Ecto-sp13_S_contig14060:374..578Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14060 375..578 +
1681462751.0865536-CDS-Ecto-sp13_S_contig14060:1124..12251681462751.0865536-CDS-Ecto-sp13_S_contig14060:1124..1225Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14060 1125..1225 +
1681462751.097313-CDS-Ecto-sp13_S_contig14060:1751..18991681462751.097313-CDS-Ecto-sp13_S_contig14060:1751..1899Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14060 1752..1899 +
1681462751.1080108-CDS-Ecto-sp13_S_contig14060:3134..32721681462751.1080108-CDS-Ecto-sp13_S_contig14060:3134..3272Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14060 3135..3272 +
1681462751.117813-CDS-Ecto-sp13_S_contig14060:3768..38611681462751.117813-CDS-Ecto-sp13_S_contig14060:3768..3861Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14060 3769..3861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14060.3167.1prot_Ecto-sp13_S_contig14060.3167.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14060 375..3861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14060.3167.1

>prot_Ecto-sp13_S_contig14060.3167.1 ID=prot_Ecto-sp13_S_contig14060.3167.1|Name=mRNA_Ecto-sp13_S_contig14060.3167.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=228bp
NTAADVGRLLEVMGVDRVIAVDLERPGTGSGGAFLGPGIPVETLLTTNIF
AEHIAERILGKDKSHQRGPSSGLVKKAIQFKRKLREYVDDVRVQTFLHAR
PNSGPVDVSSNELMGNIGEVKGRDVVIVDELIDTGGTLAALPRRLKKAGA
MNIYVCSSHGLFNANAVAILEESPVDTVFVTNSVPLPEGCKSKKIEQLHI
GRYLARMIFAEHVRSADLFKEDDIVFE*
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mRNA from alignment at Ecto-sp13_S_contig14060:375..3861+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14060.3167.1 ID=mRNA_Ecto-sp13_S_contig14060.3167.1|Name=mRNA_Ecto-sp13_S_contig14060.3167.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3487bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14060:375..3861+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACACAGCCGCTGATGTTGGGCGCTTGCTGGAGGTGATGGGCGTAGACCG CGTGATCGCGGTGGACCTAGAGAGGCCCGGCACCGGGTCCGGCGGCGCAT TCCTTGGCCCCGGCATCCCGGTCGAGACGCTGCTAACGACCAACATCTTC GCGGAGCATATCGCCGAGAGGATCCTCGGCAAGGACAAATCGCACCAGCG AGGGGTCACGGTCATCTCGGTGAGACTCGTAAAGGGAGACAGCGGGGGTG GGGGGTCGGGGTGCGGGGTTAAGAGAGAGTGGGGGGCGGGGGGAGAGACA CGGGAGGGAAGCGGGGGGGGGGAGAGAGAGGCAGAGGCGAAGAGAGGTTG AGGAAGAAGACTTTGGCGTTCTCAATTGCGTACAATGGTACTTCGAAGTA TTTGCCTGCGACAACTACCGGAGGAGCTTGGTGATTGAAGGGGATGTACA GCGCATGTAACGGCCTGTTTTCCTTTTCTTCTCCACTTTTCTTTCGTGTT GTCTTCTTCTCTCCCTCTTCTTCCCCGTTGTGGTTGTGGCAGCTTTGGAT GCTTTCGTCCCTTCCCTCTTTCCTCTCTCTCAGCCGAGCTCCCCAAAACT TTGTCATGACGTTCCGGGTGTTGTGCTCTTCTTCTAGTCTTCTTTCTCTC CCTCTCTCACAGTCGAGTTAATAATTCAATTTTTTTTTTGTCATGACGTT CCGTTTTGTGCTCTTTTTCTCATTGTTTTTTTTGTCTTGCTCTCCCGCAG CCAAGCTCTGGGTTGGTGAAGAAAGCCATCCAGTTCAAGAGAAAACTGCG AGAGTACGTGGACGACGTTAGGGTGCAGACCTTCCTGCACGCAAGGCCGA AGTAAGAGCTCGATTGATTATCCTGTTTCTTTTCAACGACCGTTGCGTCT GTCATGGGGGGCAAGAGTGGGTCGTGCAATGACGCCGGGGTTGCGGCAGT AAGTTGTCCGTGCAGTCTTGACTTCTGGCAAGCACAGAGAGACAGCCGTG CTGCAATGTAGCAGAGCCGTACTAGCAAGATCGAGATGCCGAGAACCCGG TCGCGAGGGAAAGAAGGAAGTGATGGCTCAGAATGCAGGATAGTCGCATT TTCCCGAGCATTTTCGCGTGTGTCGCAACGGAAGTAAGTCTCCAATATCC ACACGAAGGTACGCAGGTGTCGGGAGAGCTGGTGACAAAAGATGAGTTTT GTCAACCCCAGCGAATACGAAGATGCTAACAACAACAACAACGGCAAAAA CAACGACAACAACAACAACAGCAACAACAACAACAACAACAACAACAACA ACAGCACACAACAACACACAACAATAGGGAATGGTCCAACGCATGCGTGC TGTTTTGTTCGTCTTTCACTGCCGCAGCTCTGGGCCAGTCGACGTCTCCT CCAACGAGTTGATGGGCAACATCGGCGAGGTCAAGGGCCGCGATGTCGTG ATCGTGGACGAGCTGATCGACACGGGAGGCACGCTCGCGGCGCTCCCCCG CAGGCTCAAGAAGGCCGGCGCCATGGTGAGCTAGCGGCTGATATCTTCGG TTGCGATCTTCGTTGTTCGTTGTGGGGTCGAGCGGGCCGGCATAAGAGCT CATGTTTTTCTCTCCCCGCAGCAGTAGTAGTATGGTAGTGTAACAGTAGT GGGAGACACTGCTGTGGGTGACGGCTTTGAACGGTTTTGGTTGGGGTTTA AATCCTTTTAGCACTGGACGCCCAAATAGGGACACTCTTGGGGGCACAGC ACTCAAACATCCGTTTGTCGTATCGTAGGCGCCACTTGGCTCCGCTGTGT GAAAAGCATGTGGGGAACGTTGCCAACTATGCTTGTGTGAGCGTGGTGAG CTGTGTATTTTGCGGTGTGATGCCTCTCCTCGGGCTCTGACTTGCTGCAA ACATGTCTCCCAAGCCGCGTGTACCCTTCCTGGTAAAAGTCTACACAGCC TTGTCCTAGAAAAATTGCTGACTAGGCTTCAGTACGGAAAATGTCCCAGC GCATTTGCAGACACTTTTCTGTCTAAACCCAAGTCAGCATTCGTCCCTCG GGACTGTGCAGCCTCTCCCAATCAACGGATGCGGTTTTTGCTGGATTAAA ACTGACTGCGCACTAGGAAGGTGGGAAGAAAATTCTAGGTCGCCGTCTTG AGCGTCGCTTGGGTCCACCAGACGATCGCATGGACAGGTCGTTATTTAGG ATGTTTACGTTGTAGACCCTCGCCTCGTCTGCCCGTGGGTACCTATCGTA GCTGCCCCCGGTAACACTAACGATAGCTCGCTCACCCCATACATGCATGC GAAGTTCGGCTTCATTTAGCCGAGAACGAGAGCGTGCGAAATCATGATGA TAATGGCGGTGACGAACACAAGCACGGGCACATGGAAAAGCATGGCTTTT TTTTTAAGCAGGATCAATGCTTCGTCTCATTCTACCCACTTTAGCGGCAT GGCTCGTGTACCCCTTCCCCCCCCCTCCCCGGTCTACACGCTAAGGCATG CAGCGTAACATGATGTCCGATGCACAAGATGTCCACCTAGCCGTCTTGTA GAGCCTGTTACCCATACGGGAGATATCGCCGTTTGCTCCTTGGGCAGTCT TAGAAACACAGGTAGCACCCCGCTAACGCTCAATAGTGTATCTTACACCC GTGTCCATGGATAGGGATGTATTCGTTGTGCTATATGTGGAGAAGAAGAA AACACGGTAGTGCACCCTCCCCCGCCTGCCCTCACCTCCCGTTGTGCCTC CGCCGAACAGAACATCTACGTCTGCTCGTCGCACGGGCTGTTCAACGCCA ACGCCGTGGCCATCCTGGAAGAGTCCCCGGTCGACACGGTGTTCGTGACC AACTCGGTGCCTCTGCCGGAGGGCTGCAAGTCCAAGAAGATCGAACAGGT GTGCGTGCGTGCGATCGATGCCGTTTGCCGTGCCTACTACTCCGTAAGGG GAGCAAGCCAGCACGTGGAGGCATGTGCTGGTTGTAGGACTGTAGAAGGA TTTGTAGTTTTTTTCTTTTTCGGTTCGTTGCGGTTCGCTGGGCTTTTCGA GTCGACGACACGTCTGTTGTGTGAGCTGCTGAACTTGGGAACAGTAACCC CGCAGCTGGCAGCCAGGTGTGGGTTTGTCCTGCTGCCTGCTCTATTTTTA CCTTGCATCACCCCTCGATGGCACTGTCGGTGATGTCATGAGCCCACACC GGGGGGTATCGCTCGTCTGTGACCCATACCGTATACAGTACAGATACCGG GGCCGCCGAGCACGGTGCTCACCCGCGTGTTGGTGTTGCCGCTGCGGCAA CAGGAAATCGATCACACGGCTCGCCTTGTGTTGTTTTCCCGGAAATCTTA TTTTTTTTAATTTATTTTTTTCCTTTTTTTCTACCGTCTGCCAGTTGCAC ATCGGGCGGTACCTGGCTCGGATGATCTTCGCTGAGCACGTGCGGTCCGC AGACCTCTTCAAGGAGGACGACATCGTGTTCGAATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14060:375..3861+

>mRNA_Ecto-sp13_S_contig14060.3167.1 ID=mRNA_Ecto-sp13_S_contig14060.3167.1|Name=mRNA_Ecto-sp13_S_contig14060.3167.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=684bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14060:375..3861+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACACAGCCGCTGATGTTGGGCGCTTGCTGGAGGTGATGGGCGTAGACCG
CGTGATCGCGGTGGACCTAGAGAGGCCCGGCACCGGGTCCGGCGGCGCAT
TCCTTGGCCCCGGCATCCCGGTCGAGACGCTGCTAACGACCAACATCTTC
GCGGAGCATATCGCCGAGAGGATCCTCGGCAAGGACAAATCGCACCAGCG
AGGGCCAAGCTCTGGGTTGGTGAAGAAAGCCATCCAGTTCAAGAGAAAAC
TGCGAGAGTACGTGGACGACGTTAGGGTGCAGACCTTCCTGCACGCAAGG
CCGAACTCTGGGCCAGTCGACGTCTCCTCCAACGAGTTGATGGGCAACAT
CGGCGAGGTCAAGGGCCGCGATGTCGTGATCGTGGACGAGCTGATCGACA
CGGGAGGCACGCTCGCGGCGCTCCCCCGCAGGCTCAAGAAGGCCGGCGCC
ATGAACATCTACGTCTGCTCGTCGCACGGGCTGTTCAACGCCAACGCCGT
GGCCATCCTGGAAGAGTCCCCGGTCGACACGGTGTTCGTGACCAACTCGG
TGCCTCTGCCGGAGGGCTGCAAGTCCAAGAAGATCGAACAGTTGCACATC
GGGCGGTACCTGGCTCGGATGATCTTCGCTGAGCACGTGCGGTCCGCAGA
CCTCTTCAAGGAGGACGACATCGTGTTCGAATGA
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