mRNA_Ecto-sp13_S_contig14054.3163.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14054.3163.1
Unique NamemRNA_Ecto-sp13_S_contig14054.3163.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14054.3163.1 vs. uniprot
Match: D8LIW6_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIW6_ECTSI)

HSP 1 Score: 526 bits (1354), Expect = 2.130e-172
Identity = 287/302 (95.03%), Postives = 293/302 (97.02%), Query Frame = 1 
Query:    1 VDGLGADASAGKTDDHDDNDPEAAAKHARRLEMRRKRATHAAEEDSYGTLKEHLLAHLRARPKKDDPETQRIAKGFHSTEAVDLEKSLLKNRLEGHLRSRAAESAAATSGSSKGGERTARIKELELAMNQRMLKHGLAASGGDERSGGAGVGSAAAGAEEGLDMEGTREALGGSLGRRSSLEELTNQGIFQRTTPLQHGLERQLIEERLSRSLRNPLRPSKEDLVEHGIYIDATPRELQMEHYLAARNLKHGLERRESIQDLKDHGVYQPENSMRAAHEKLLIKALLQRKLSHAFSREEIDR 906
            VDGLGADASAGKTDDHDDNDPEAAA HARRLEMRRKRAT AAEEDSYGTLKEHLLAHLRARPKKDDPETQRIAK FHSTEAVDLEKSLLKNRLEGHLRSRAAESAAATSGSSKGGERTARIKELELAMNQRM+KH LAASGGDERSGGAGVGSA + AEEGLDME  REALGGSLGRRSSLEELTNQGIFQRTTPLQHGLERQLIE+RLSRSLRNPLRPSK+DLVEHGIYIDATPRELQMEHYLA RNLKHGLERRESIQDLKDHGVYQPENS+RAAHEKLLIKALLQRKLSHAFSREE+DR
Sbjct:  745 VDGLGADASAGKTDDHDDNDPEAAANHARRLEMRRKRATDAAEEDSYGTLKEHLLAHLRARPKKDDPETQRIAKEFHSTEAVDLEKSLLKNRLEGHLRSRAAESAAATSGSSKGGERTARIKELELAMNQRMMKHSLAASGGDERSGGAGVGSAPSTAEEGLDMEVAREALGGSLGRRSSLEELTNQGIFQRTTPLQHGLERQLIEKRLSRSLRNPLRPSKKDLVEHGIYIDATPRELQMEHYLATRNLKHGLERRESIQDLKDHGVYQPENSLRAAHEKLLIKALLQRKLSHAFSREEMDR 1046
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BLAST of mRNA_Ecto-sp13_S_contig14054.3163.1 vs. uniprot
Match: A0A6H5L5E6_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E6_9PHAE)

HSP 1 Score: 507 bits (1305), Expect = 1.540e-169
Identity = 279/298 (93.62%), Postives = 284/298 (95.30%), Query Frame = 1 
Query:    1 VDGLGADASAGKTDDHDDNDPEAAAKHARRLEMRRKRATHAAEEDSYGTLKEHLLAHLRARPKKDDPETQRIAKGFHSTEAVDLEKSLLKNRLEGHLRSRAAESAAATSGSSKGGERTARIKELELAMNQRMLKHGLAASGGDERSGGAGVGSAAAGAEEGLDMEGTREALGGSLGRRSSLEELTNQGIFQRTTPLQHGLERQLIEERLSRSLRNPLRPSKEDLVEHGIYIDATPRELQMEHYLAARNLKHGLERRESIQDLKDHGVYQPENSMRAAHEKLLIKALLQRKLSHAFSRE 894
            VDGLGA+AS GKTDDHDDNDPEAAAKHARRLEMRRKRATHAAEEDSYGTLKEHLLAHL+ARPKKDDPETQRIAK FHSTEAVDLEKSLLKNRLEGHLRSRAAESA    G SKGGERTARIKELELAMNQRMLKH LAASGGDER GGAGVGSAAA AEEGLDME TREALGGSLGRRSSLEELTNQGIFQRTTPLQHGLERQLIE+RLSRSLRNPLRPSK+DLVEHGIYIDATPRELQMEHYLA RNLKHGLERRESIQDLKDHGVYQ ENS+ AAHEKLLIKALLQRKLSHAFSRE
Sbjct:  291 VDGLGAEASVGKTDDHDDNDPEAAAKHARRLEMRRKRATHAAEEDSYGTLKEHLLAHLKARPKKDDPETQRIAKEFHSTEAVDLEKSLLKNRLEGHLRSRAAESAV---GRSKGGERTARIKELELAMNQRMLKHSLAASGGDERRGGAGVGSAAATAEEGLDMEVTREALGGSLGRRSSLEELTNQGIFQRTTPLQHGLERQLIEQRLSRSLRNPLRPSKKDLVEHGIYIDATPRELQMEHYLATRNLKHGLERRESIQDLKDHGVYQAENSLSAAHEKLLIKALLQRKLSHAFSRE 585
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14054.3163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIW6_ECTSI2.130e-17295.03EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5L5E6_9PHAE1.540e-16993.62EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14054contigEcto-sp13_S_contig14054:198..4138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size984
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-20_001820.1
Cds size984
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14054.3163.1prot_Ecto-sp13_S_contig14054.3163.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14054 198..4138 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462750.7070415-CDS-Ecto-sp13_S_contig14054:197..3741681462750.7070415-CDS-Ecto-sp13_S_contig14054:197..374Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14054 198..374 -
1681462750.715709-CDS-Ecto-sp13_S_contig14054:977..10611681462750.715709-CDS-Ecto-sp13_S_contig14054:977..1061Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14054 978..1061 -
1681462750.7252781-CDS-Ecto-sp13_S_contig14054:1810..19601681462750.7252781-CDS-Ecto-sp13_S_contig14054:1810..1960Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14054 1811..1960 -
1681462750.7347143-CDS-Ecto-sp13_S_contig14054:2448..27141681462750.7347143-CDS-Ecto-sp13_S_contig14054:2448..2714Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14054 2449..2714 -
1681462750.74425-CDS-Ecto-sp13_S_contig14054:3496..36601681462750.74425-CDS-Ecto-sp13_S_contig14054:3496..3660Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14054 3497..3660 -
1681462750.7541225-CDS-Ecto-sp13_S_contig14054:3995..41381681462750.7541225-CDS-Ecto-sp13_S_contig14054:3995..4138Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14054 3996..4138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14054.3163.1

>prot_Ecto-sp13_S_contig14054.3163.1 ID=prot_Ecto-sp13_S_contig14054.3163.1|Name=mRNA_Ecto-sp13_S_contig14054.3163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=328bp
VDGLGADASAGKTDDHDDNDPEAAAKHARRLEMRRKRATHAAEEDSYGTL
KEHLLAHLRARPKKDDPETQRIAKGFHSTEAVDLEKSLLKNRLEGHLRSR
AAESAAATSGSSKGGERTARIKELELAMNQRMLKHGLAASGGDERSGGAG
VGSAAAGAEEGLDMEGTREALGGSLGRRSSLEELTNQGIFQRTTPLQHGL
ERQLIEERLSRSLRNPLRPSKEDLVEHGIYIDATPRELQMEHYLAARNLK
HGLERRESIQDLKDHGVYQPENSMRAAHEKLLIKALLQRKLSHAFSREEI
DRLKQKGVYKEAEHEKLEADRLLVTRQV
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mRNA from alignment at Ecto-sp13_S_contig14054:198..4138-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14054.3163.1 ID=mRNA_Ecto-sp13_S_contig14054.3163.1|Name=mRNA_Ecto-sp13_S_contig14054.3163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3941bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14054:198..4138- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGACGGCCTGGGTGCTGATGCTTCGGCGGGGAAGACCGACGACCACGA
CGACAACGACCCGGAGGCGGCGGCGAAACACGCCCGCCGCCTGGAGATGA
GGCGGAAACGTGCCACCCACGCCGCTGAAGAGGACAGCTACGGGTAAGTT
AGTTGGGAGAGAAGAAAGAGAACCGTCTGCGCCTCTCTCTGTGTCTCTCT
TGTCTCTCTTTCTCTTTCTCTGACCATCTGGTTTCGCACCTCGCTGTGTG
TATTTCGTGAACACCCGTGACACGCAACAGCCGCGGGCGCAGTTACACCT
TGCGTGCCGTGTTAGAACACCGGTAACACTTGGGGCCTGACACAAGGCAC
CTACTTGTAAGATTAAACAAGTTCCTGTTGACTGCCGATCGTTAAGTTGT
TGCTTTTCCTTCACGAAGTGTGCGCAATCTAACCCCCGCCGCTCCTCTCT
ACCTCTTCCGCCGCATTATTCTCGACAGGACCTTGAAGGAACATCTTCTC
GCGCACTTGCGGGCGAGGCCTAAAAAGGACGACCCGGAGACGCAGAGAAT
CGCCAAGGGATTTCACAGCACCGAGGCCGTCGACCTTGAGAAAAGCCTCC
TCAAGAATCGCTTGGAGGGTCACTTGCGATCCCGCGCCGCCGGTGAGAGG
TTGATCGATAGGGAGGGCCGATGAGGGCGGGGCGGCGTGCTCACGTTTTG
CATGCCTCAAGCGGGTAGACCAGTGACCACGCGTCGTCGAGAGGGCGGAG
AATTGTTCCTCCAGGACCGATCACGGATGCTGGCTAGGGCGGGGGGGAGC
GAAGAGATGGACGATCTCGGGGGGGCATGGGGGAGGAGGTTCTCTTGCGT
TATTTGCTGTGAGGAACGAAGGGGGACGGTGGTGGGTGCGTTGGGGGGAC
ATGGGGGAGGAGGTTCTACTTCTGTAAATTTTATGTGTCGCGCCACTCTG
TCGCGGGACAGGTCTCGGCCTGGATGGAAGGTCACACGTGGTGATATTGT
AACCATGCCCCCTGAGGCGCATCTGTGCTTGATGCGCATGCGCCCTTCCA
AGTGTTGTCCTCGTTTCCTAGGGGACTTTCCCCACTTCGTGTATCTCCGA
GACAAAAGTGAGGTTGGCAAAGACGGCGTTGGCCCCATTCTGTAGCTGGA
AACGATGCTGCGCGAACATGCTTGTGTAGCAGGTAGTGCGTGTGAACATG
TTCACTCGCGTTTCTAGCGAGATAGTCGAACACGTACCCGAAGAGGTTTT
GTTGTCGCTCGAACGTTCATGTGTCAGCACATGCCGACACGCCTTTTATA
GCGATAGTAAAACAAAATGTGATGAATGACGTTTCGTTGGCGCTTTTTTC
GACCACGCTTTGCTGATGTCGATCGCTCGTGGCGCCGGTGCATTTTTTCC
TACTGCTTGCGAAACGGTGGCCAGAGTCGGCAGCGGCGACGTCCGGGAGT
TCAAAGGGCGGGGAGCGGACGGCAAGGATCAAGGAGCTAGAGCTCGCCAT
GAACCAGCGCATGCTGAAGCACGGCCTCGCGGCTAGCGGCGGGGATGAAC
GCAGCGGCGGCGCCGGCGTTGGGTCAGCGGCGGCGGGGGCAGAGGAAGGC
CTGGATATGGAGGGGACGAGAGAGGCCCTCGGGGGAAGCCTGGGCCGGCG
GTCCAGTTTGGAAGAACTCACGAACCAGGGAATATTCCAGGTGTGTATGT
GTGTATTACGCTTGGCTTGCAGAGAGAGAGAGGGGTGTGCGAGGGGCTGG
GCCAAGGCATCGGCTACAGCAGTTCCAACCTCCCAAGCAGCTTGCTGGAG
TCCAGGATTCTTACCATGTCCCCCAACCCTGACTAGTCGCGTCGTTGACG
CGATAAAAAGGTGCGGCGTCCATGTGCCCGCCCCTGCAGCATCCAGTCCT
GGACAACGCTTCCGGCAAAAACAAGAACACACAAAAATTACTAATCAGTC
GAAAATGTGTGCTGCACGACACATGTGCCAGAATGGACAGTGTGTGTCCT
TACGAAACGGACACAGGCATAGGCACCATCCATGAAACAGATGCTGTGGA
TACGACGACGTCCCGGCCTTAACGCGAAATCACACTTTCTTTCCTCTCGC
GTCCTCTCGCTGTCTCGTCACTAATACCGTATCTGCGAACGCTTTCGCGC
TTTCCCTGGCGCAACAATGATTTCAAAGAGGACGACACCGCTGCAGCATG
GCCTGGAGCGACAGTTGATCGAGGAACGCCTTTCAAGATCTCTACGAAAC
CCCCTGCGGCCTTCCAAGGAAGACCTGGTTGAACACGGTATCTACATCGA
CGCCACCCCCAGGGAGTTGCAGATGGAGGTGAATGGATCCCTTGGCGACA
GAACATCAAGACTGTGTTCATATAACTATTCGTTCGATTCGTAGAAGAAT
TAACGTTTGGAACACCGGGGACGGGGGGGCTTGCAAACATGAGCACAGCT
TCAACCAATGTGCAACGATGGGCCTCTTTCTTGCAAATCGGTCGTTATTC
GTCATCGATTTTTATGCCCGCCGCCTGCGATGTCTTCCGACCGTACAGTC
TTGCCCGTGTTGACCAAAGAGCTCTTGCCGCCCTCCCGCCCCGACGTAGA
ACCTTTAGATAATCCCTCTGTGTTGCTACGTACCAATAGATCAATCGCAC
AGCGTACCTCTGCGGCAACCACAGATCGGGTTCTACGGGAAACTACATCG
GCAAACCCGCGTGCAATATCCAGATAATTGTCTGTATCCGCTCCCCGTAA
CTTCAACCTGTCGCACGTGCGCCCTGTTCCGTCTTGCGAGAGAGAACGAG
AACGGTAGGAAGGGCTAGAGACGTATCTCGGTCTATCGAGACTTCCGCTG
AGCCGCCATTGCTGTCTATTCCACAGACAATCGAGCAAGAAAGATTGCCC
TGACTATCATTTCATTCCTTTGTTAGCAGGCACTACCGCACTGTTGTAGA
CTCGTCGCATGGTCGACTCCCCTCCCATCAAACTCTTGGAAAACTTTGGT
GGTGTTCCCCCGCCCCCTTCGTTCAGACCACGCTCGTGCCATACGGATTG
TTAACGTCATGGTTGTGATCTTCGCAGCACTACCTGGCTGCTCGAAACCT
CAAGCACGGCCTCGAGCGGCGGGAATCGATCCAAGACCTGAAGGACCACG
GCGTTTATCAGGTCAGACACGGACTGTGTCGGGCAGTCTTTCTTGTAACC
CTTGTTGCGCTTCTTTGCCCGCCAGGGCGATGGTCTTCGCTAGTATTGTC
CACGATGTCTTCATCTCTTTCTGTGACCATGGGCGATTGTCGTATCTCGT
GCTTGTCCACAATGTTCTCATCTCTTCGTGTAACCTCGGGCGCCGGTCAT
ACCTCGGTGTCTGTCCTCCTCAATGTCTTCATCTCCTTCTAGGTCAGCAA
CAGCCAGCCCACTCGTACGTAGACCATAGACATAAAACCGTTTTCGTAAC
CGTTTTGCATATTTGTTGTCTTGTTCTCCCAGCAGAAAACTAGATACACC
GTGCCCTAAGCGCGGCTCGCGCAAAGCAGGCCACCACGAGGGAAACGGTT
CCGACCATGTCTTGGGCTCCTGCTGAATGCCTTAACACCGACACACGTCA
TTTTCTCACGCCCCAGCGAAAAGCACGTTTCTACGAAGGAAACGGTGCCG
ACCATGTCGTCGGCTCGGTTGCTTGATTGACACACCGCGTTTTCGTGTGC
CCCTAACGTTTAGTTTTTTTTTTCTTGTTTTGCTTTTGTCATCTTTGATG
CATCTCTTGTTTAGCCTGAGAACAGTATGCGCGCGGCCCACGAGAAGCTG
CTGATCAAGGCGCTCCTCCAGCGTAAGCTGTCGCACGCTTTTTCGAGAGA
GGAGATCGACCGCCTGAAGCAGAAGGGCGTGTACAAGGAGGCCGAGCACG
AAAAGCTAGAGGCGGACCGCCTCCTGGTCACACGCCAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14054:198..4138-

>mRNA_Ecto-sp13_S_contig14054.3163.1 ID=mRNA_Ecto-sp13_S_contig14054.3163.1|Name=mRNA_Ecto-sp13_S_contig14054.3163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=984bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14054:198..4138- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGACGGCCTGGGTGCTGATGCTTCGGCGGGGAAGACCGACGACCACGA
CGACAACGACCCGGAGGCGGCGGCGAAACACGCCCGCCGCCTGGAGATGA
GGCGGAAACGTGCCACCCACGCCGCTGAAGAGGACAGCTACGGGACCTTG
AAGGAACATCTTCTCGCGCACTTGCGGGCGAGGCCTAAAAAGGACGACCC
GGAGACGCAGAGAATCGCCAAGGGATTTCACAGCACCGAGGCCGTCGACC
TTGAGAAAAGCCTCCTCAAGAATCGCTTGGAGGGTCACTTGCGATCCCGC
GCCGCCGAGTCGGCAGCGGCGACGTCCGGGAGTTCAAAGGGCGGGGAGCG
GACGGCAAGGATCAAGGAGCTAGAGCTCGCCATGAACCAGCGCATGCTGA
AGCACGGCCTCGCGGCTAGCGGCGGGGATGAACGCAGCGGCGGCGCCGGC
GTTGGGTCAGCGGCGGCGGGGGCAGAGGAAGGCCTGGATATGGAGGGGAC
GAGAGAGGCCCTCGGGGGAAGCCTGGGCCGGCGGTCCAGTTTGGAAGAAC
TCACGAACCAGGGAATATTCCAGAGGACGACACCGCTGCAGCATGGCCTG
GAGCGACAGTTGATCGAGGAACGCCTTTCAAGATCTCTACGAAACCCCCT
GCGGCCTTCCAAGGAAGACCTGGTTGAACACGGTATCTACATCGACGCCA
CCCCCAGGGAGTTGCAGATGGAGCACTACCTGGCTGCTCGAAACCTCAAG
CACGGCCTCGAGCGGCGGGAATCGATCCAAGACCTGAAGGACCACGGCGT
TTATCAGCCTGAGAACAGTATGCGCGCGGCCCACGAGAAGCTGCTGATCA
AGGCGCTCCTCCAGCGTAAGCTGTCGCACGCTTTTTCGAGAGAGGAGATC
GACCGCCTGAAGCAGAAGGGCGTGTACAAGGAGGCCGAGCACGAAAAGCT
AGAGGCGGACCGCCTCCTGGTCACACGCCAGGTA
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