mRNA_Ecto-sp13_S_contig1405.3160.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1405.3160.1
Unique NamemRNA_Ecto-sp13_S_contig1405.3160.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1405.3160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1405contigEcto-sp13_S_contig1405:14358..16174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size152
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size150
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462750.4161153-CDS-Ecto-sp13_S_contig1405:14359..144301681462750.4161153-CDS-Ecto-sp13_S_contig1405:14359..14430Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1405 14360..14430 -
1681462750.4258301-CDS-Ecto-sp13_S_contig1405:16095..161741681462750.4258301-CDS-Ecto-sp13_S_contig1405:16095..16174Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1405 16096..16174 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1405.3160.1prot_Ecto-sp13_S_contig1405.3160.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1405 14360..16174 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1405.3160.1

>prot_Ecto-sp13_S_contig1405.3160.1 ID=prot_Ecto-sp13_S_contig1405.3160.1|Name=mRNA_Ecto-sp13_S_contig1405.3160.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
RKGEVKFAAAIGSPPEFGARRHAYLSCAIPRELGGLTALTKLGLSSNNLS
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mRNA from alignment at Ecto-sp13_S_contig1405:14358..16174-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1405.3160.1 ID=mRNA_Ecto-sp13_S_contig1405.3160.1|Name=mRNA_Ecto-sp13_S_contig1405.3160.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1817bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1405:14358..16174- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAAAGGGCGAGGTTAAATTCGCCGCAGCGATCGGTTCGCCGCCGGAGTT
TGGTGCTCGTCGCCACGCATACCTCTCGTGTGAGTCTCACGATTAATCGG
AAACGACAGCCCCCACCTTTTCCCGCCACCCGACAGTTGTTCTATATCGC
TCAGCCGTAACGACGACCGTTTCCCCCTCTCGGCGAAGGGTCGAGGGAAA
CATGAACTTGGTCACGAGTGCCCTCTCGTTGAAAGTTCTTCCCGGGCGGA
GTTGGTGTCTCTGAGGTGTTCTTGCCGCTTGAATCCAATCTGCTTTGTAG
TTTGTTGGTGGGCGATGTTTCGGCAGGGAATGGGTATTGGAGCGTACCAG
TCTGTCGAGAAACTCGGAACCACGTGTCTGCTGAGGAAATCGAAGCGTGT
TCGGCGCAGCTATGTTTGTGCGTGCATTAGCATGCGAGAACTTTGGTGCT
GTTGCGTGAACGTGCCACCACAGTTGGTGGGTTGGAGAACCCTTGGTCGG
GGAGGAATCGATCTCGTCCCCGAAACCAGGGAAATGGGAAACTCCGAGAG
GTTTCAAGAAACAACGGGATATCTTGCCACGACTACTGCGCCGCAAATGT
GTACGAAGGCACCTAGCCATTTGGGTTTCGCAAGATTTCTCATCCTCCAC
CACAGCTACCGGAAGTCGTGCACTGTTTTGACGTATTTGAGTTTCAATGC
TGGTGAGCGATTGCTAGCTTTAAATGATCGACTCCTACACTTGAAGCTGT
GTTGGCCGGGTCGTTGGAATAGGCACGAAAGGCGTGGGACTATCCTTCTC
ATACTCGAAACATCCAGTTCGAACCCTGCAGAGAGCGATTGTGGTTATTG
ATTCAGGTTCAAAGTCCGGGTTGCGAGATGCAGGTGTACATTTGCCGGGT
TATCTGTTGTTGAGAAGCACGATAACCACTAGACCACTAGACTACGTAGT
AGTCAGCGCTGACTAGTGGTGTAGTGGTCATCGTGCTTCTCCACATTCGT
CAACCCCAAAATCAATGACTGGAATTGTGGGGTCAGTAATTACTTGGTGT
GTCTGAACCTCTGTCTTGGTCTTTCTCTTTGCCACCGCCTAGATGAACTT
CGTTTGTTTCATTTCGACCTGGGTTGGTACTGCACAGAGGTCAGAAATGT
TTTGTAATGTATTACAACGGAGGCGCGACAAGAATGTTGACAGCGTCCAG
TGCAAGTGTACCCTGCAGCTGCGGACTCGCGATTCGTGTGTGCAACGATC
TGGTTTGCTGCTCGAAACAGGTTTTTGCCGTCTTTTCAGTGCCTGTTTGC
CCGAATATCACTTGAGATTTTCTGGTATCACTTGGGCTCGAGATGATGTT
CGTTCTTCTTTTTTCTACTTTGGGGTAGAAAATACAAACGTGTTTCGGAG
TAGACAATCGCCTTCAATCACCAAGTTGGGATAAGTCACGACGAAAATGC
ATTTGTTTGCGCCCATCGCCCTGCATTGCCCTGCCCCGCCTCGCCCATGG
GAAGACAACTAAATCGCTTGAACCTTTTTTAAACGGCAACACCCGCTATA
TTTGGTGAGAACGCAGTGGACATTCGTCGCAAACGTTGGGGAGTGTGTTG
TACAGGAGATGAAGACCCGTATGCTCATTCTCATCTTGTCAAGCGGAAGA
AATATTTCATCCAAAAACTGCTCTCGGGTTGCTGACAGACGTGGCACGTG
ATATTCTGTTTCTGTCCGGACCGTGCTGGCACCAAATTCCTCAGGCGCCA
TTCCACGGGAGTTGGGTGGGTTGACGGCGCTAACGAAGCTAGGTCTCAGC
AGCAACAATCTTTCCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1405:14358..16174-

>mRNA_Ecto-sp13_S_contig1405.3160.1 ID=mRNA_Ecto-sp13_S_contig1405.3160.1|Name=mRNA_Ecto-sp13_S_contig1405.3160.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1405:14358..16174- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAAAGGGCGAGGTTAAATTCGCCGCAGCGATCGGTTCGCCGCCGGAGTT
TGGTGCTCGTCGCCACGCATACCTCTCGTGCGCCATTCCACGGGAGTTGG
GTGGGTTGACGGCGCTAACGAAGCTAGGTCTCAGCAGCAACAATCTTTCC
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