mRNA_Ecto-sp13_S_contig14028.3142.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14028.3142.1
Unique NamemRNA_Ecto-sp13_S_contig14028.3142.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14028.3142.1 vs. uniprot
Match: D7G6W2_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 4.530e-32
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    1 VWEREVVDTLKLTGLQLLVTTRDRSVVSMPRECVEVGDMEEDEALEVLRVGCGASKNLELPRAEALQ 201
            VWERE+VD LKLTGLQLLVTTRDRSVVSMP ECVEVGDMEEDEALEVLRVGCGASKNLELPRAEALQ
Sbjct:  345 VWEREIVDALKLTGLQLLVTTRDRSVVSMPGECVEVGDMEEDEALEVLRVGCGASKNLELPRAEALQ 411
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BLAST of mRNA_Ecto-sp13_S_contig14028.3142.1 vs. uniprot
Match: A0A6H5KMV3_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMV3_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 4.210e-30
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:    1 VWEREVVDTLKLTGLQLLVTTRDRSVVSMPRECVEVGDMEEDEALEVLRVGCGASKNLELPRAEALQ 201
            VWEREVVDTLKLTGLQLLVTTRDRSVVSMP ECVEVGDME DEALE+LRVGCGASKNLELPRAE LQ
Sbjct:  326 VWEREVVDTLKLTGLQLLVTTRDRSVVSMPGECVEVGDME-DEALELLRVGCGASKNLELPRAEVLQ 391
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BLAST of mRNA_Ecto-sp13_S_contig14028.3142.1 vs. uniprot
Match: A0A6H5KF10_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF10_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.060e-26
Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = 1 
Query:    1 VWEREVVDTLKLTGLQLLVTTRDRSVVSMPRECVEVGDMEEDEALEVLRVGCGASKNLELPRAEALQ 201
            VWE EVV+ L++T LQLLVTTRDRSVVSMP EC+EVGDMEEDEALEVLRVGCGA KNLELPR +ALQ
Sbjct:  537 VWEPEVVNALQVTELQLLVTTRDRSVVSMPGECIEVGDMEEDEALEVLRVGCGAPKNLELPRLQALQ 603
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BLAST of mRNA_Ecto-sp13_S_contig14028.3142.1 vs. uniprot
Match: A0A6H5JLW6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW6_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 3.030e-11
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 VWEREVVDTLKLTGLQLLVTTRDRSVVSMPRECVEVGDMEEDEALEVLRVGCGA--SKNLELPRAEAL 198
            V EREVV+ L   GL+L+VTTRDRSVV +P  C+EVGDM E+EALE+L +  GA  S+  +LP A A+
Sbjct:   94 VLEREVVEALLPLGLKLVVTTRDRSVVGVPGGCLEVGDMTEEEALELLMLASGAVSSRIADLPLAMAV 161
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BLAST of mRNA_Ecto-sp13_S_contig14028.3142.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 5.740e-11
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 VWEREVVDTLKLTGLQLLVTTRDRSVVSMPRECVEVGDMEEDEALEVL 144
            VWEREVVD L   G ++LVTTRDRSVV +P  C+E+GDM E+EALE+L
Sbjct:  272 VWEREVVDALLPLGFKVLVTTRDRSVVGVPTRCLELGDMTEEEALELL 319
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BLAST of mRNA_Ecto-sp13_S_contig14028.3142.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 6.920e-10
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 VWEREVVDTLKLTGLQLLVTTRDRSVVSMPRECVEVGDMEEDEALEVLRVGCGA 162
            VWEREVVD     G ++L+TTRDRSVV +P   +EVGDM E+EALE+LR   GA
Sbjct:  341 VWEREVVDAFVPLGFKVLLTTRDRSVVVVPAGRLEVGDMTEEEALELLRKSSGA 394
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BLAST of mRNA_Ecto-sp13_S_contig14028.3142.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 4.570e-9
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 VWEREVVDTLKLTGLQLLVTTRDRSVVSMPRECVEVGDMEEDEALEVLRVGCG 159
            VWEREVVD     G ++L+TTRDRSVV +P   +E+GDM E+EALE+LR   G
Sbjct:  395 VWEREVVDAFVPLGFKVLLTTRDRSVVGLPAGRLELGDMTEEEALELLRKTSG 447
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BLAST of mRNA_Ecto-sp13_S_contig14028.3142.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 6.270e-9
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 VWEREVVDTLKLTGLQLLVTTRDRSVVSMPRECVEVGDMEEDEALEVLRVGCGA 162
            VWEREVVD     G ++L+TTRDRSVV +P   +E+GD+ E+EALE+LR   GA
Sbjct:  378 VWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLELGDVTEEEALELLRKTSGA 431
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BLAST of mRNA_Ecto-sp13_S_contig14028.3142.1 vs. uniprot
Match: A0A6H5JW28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW28_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 8.280e-9
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 VWEREVVDTLKLTGLQLLVTTRDRSVVSMPRECVEVGDMEEDEALEVLR 147
            VWE EVVD L   GL++LVTT DRSV+ +   CVEVGDM E EALE+LR
Sbjct:  252 VWEPEVVDALLPLGLKVLVTTIDRSVLGVSSGCVEVGDMTEGEALELLR 300
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14028.3142.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 8.380e-9
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 VWEREVVDTLKLTGLQLLVTTRDRSVVSMPRECVEVGDMEEDEALEVL 144
            VWEREVVD L   GL++LVTTRDRSVV +    +E+GDM E+EALE+L
Sbjct:  136 VWEREVVDALLSLGLKVLVTTRDRSVVGVSGGLLELGDMTEEEALELL 183
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14028.3142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7G6W2_ECTSI4.530e-3295.52NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KMV3_9PHAE4.210e-3094.03NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KF10_9PHAE1.060e-2683.58NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JLW6_9PHAE3.030e-1157.35NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KU94_9PHAE5.740e-1166.67NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KXS7_9PHAE6.920e-1061.11NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G722_ECTSI4.570e-958.49NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7G720_ECTSI6.270e-957.41NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5JW28_9PHAE8.280e-965.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LJA6_9PHAE8.380e-964.58NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14028contigEcto-sp13_S_contig14028:4287..4488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score127.5
Seed ortholog evalue2.4e-27
Seed eggNOG ortholog2880.D7G6W2
Model size203
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
Cds size201
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462749.293522-CDS-Ecto-sp13_S_contig14028:4286..44871681462749.293522-CDS-Ecto-sp13_S_contig14028:4286..4487Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14028 4287..4487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14028.3142.1prot_Ecto-sp13_S_contig14028.3142.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14028 4287..4487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14028.3142.1

>prot_Ecto-sp13_S_contig14028.3142.1 ID=prot_Ecto-sp13_S_contig14028.3142.1|Name=mRNA_Ecto-sp13_S_contig14028.3142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=67bp
VWEREVVDTLKLTGLQLLVTTRDRSVVSMPRECVEVGDMEEDEALEVLRV
GCGASKNLELPRAEALQ
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mRNA from alignment at Ecto-sp13_S_contig14028:4287..4488+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14028.3142.1 ID=mRNA_Ecto-sp13_S_contig14028.3142.1|Name=mRNA_Ecto-sp13_S_contig14028.3142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=202bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14028:4287..4488+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTGGGAGCGGGAGGTTGTTGACACCCTGAAGCTGACGGGGCTGCAGCT
GCTCGTAACCACGCGCGATCGTTCGGTGGTGTCGATGCCGAGAGAGTGCG
TGGAGGTGGGGGATATGGAGGAGGACGAGGCCCTGGAGGTACTGAGAGTC
GGTTGCGGGGCATCCAAGAACCTCGAGTTACCGCGTGCTGAGGCGTTGCA
GG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14028:4287..4488+

>mRNA_Ecto-sp13_S_contig14028.3142.1 ID=mRNA_Ecto-sp13_S_contig14028.3142.1|Name=mRNA_Ecto-sp13_S_contig14028.3142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14028:4287..4488+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTGGGAGCGGGAGGTTGTTGACACCCTGAAGCTGACGGGGCTGCAGCT
GCTCGTAACCACGCGCGATCGTTCGGTGGTGTCGATGCCGAGAGAGTGCG
TGGAGGTGGGGGATATGGAGGAGGACGAGGCCCTGGAGGTACTGAGAGTC
GGTTGCGGGGCATCCAAGAACCTCGAGTTACCGCGTGCTGAGGCGTTGCA
G
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