mRNA_Ecto-sp13_S_contig13975.3097.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13975.3097.1
Unique NamemRNA_Ecto-sp13_S_contig13975.3097.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13975.3097.1 vs. uniprot
Match: A0A6H5L306_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L306_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.240e-19
Identity = 91/105 (86.67%), Postives = 92/105 (87.62%), Query Frame = -2 
Query:    3 GRKRKRSRGLSSGRRTGHGGXXXXNLGETGLSDDDVESNSADSTSXXXXXXXXXXDLSEGGDEIDDAVAAFLSGVAQXXXXXXXXXXXXXXXXXDRDGDVGSTDA 317
            GRKRKRSR LSSGRR GHGG XXXNLGETGLSDD VES S D   XXXXXXXXXX LSEGGDEID+AVAAFLSGVAQ  XXXXXXXXXXXXXXXDRDGDVGS DA
Sbjct:  956 GRKRKRSRELSSGRRPGHGGGXXXNLGETGLSDDGVESGS-DXXXXXXXXXXXXXXLSEGGDEIDNAVAAFLSGVAQDKXXXXXXXXXXXXXXXDRDGDVGSIDA 1059
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BLAST of mRNA_Ecto-sp13_S_contig13975.3097.1 vs. uniprot
Match: D7FM15_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM15_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.020e-10
Identity = 60/77 (77.92%), Postives = 62/77 (80.52%), Query Frame = -2 
Query:   87 GRKRKRSRGLSSGRRTGHGGXXXXNLGETGLSDDDVESNSADSTSXXXXXXXXXXDLSEGGDEIDDAVAAFLSGVAQ 317
            GRKRKRSRGLSSGRR GHG XXXX LGETGLSDD           XXXXXXXXXX LSEGGDEID+AVAAFLSGVA+
Sbjct: 1073 GRKRKRSRGLSSGRRPGHGXXXXXXLGETGLSDDXXXXXXX--XXXXXXXXXXXXXLSEGGDEIDNAVAAFLSGVAE 1147
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13975.3097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L306_9PHAE1.240e-1986.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FM15_ECTSI1.020e-1077.92DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13975contigEcto-sp13_S_contig13975:33..352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size320
Hectar predicted targeting categoryother localisation
Exons1
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462745.682525-CDS-Ecto-sp13_S_contig13975:32..3501681462745.682525-CDS-Ecto-sp13_S_contig13975:32..350Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13975 33..350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13975.3097.1prot_Ecto-sp13_S_contig13975.3097.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13975 33..350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13975.3097.1

>prot_Ecto-sp13_S_contig13975.3097.1 ID=prot_Ecto-sp13_S_contig13975.3097.1|Name=mRNA_Ecto-sp13_S_contig13975.3097.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp
SASVLPTSPSLSPPPPRQSPSESSESSSSCATPDKNAATASSISSPPSLR
SSSSSPSSSSSLVLSALLLSTSSSLSPVSPRLPPPPPPCPVLRPELSPRD
RLRFRP
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mRNA from alignment at Ecto-sp13_S_contig13975:33..352+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13975.3097.1 ID=mRNA_Ecto-sp13_S_contig13975.3097.1|Name=mRNA_Ecto-sp13_S_contig13975.3097.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=320bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13975:33..352+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCGCGTCGGTGCTGCCCACATCGCCGTCCCTGTCTCCGCCGCCGCCACG
ACAATCGCCGTCAGAGTCGTCAGAGTCGTCCTCGTCCTGCGCGACCCCGG
ACAAGAACGCCGCCACGGCATCGTCAATCTCGTCGCCCCCCTCGCTAAGG
TCATCGTCCTCGTCGCCCTCGTCGTCTTCATCGCTGGTGCTATCGGCGCT
GTTGCTTTCGACGTCATCGTCGCTAAGTCCCGTTTCGCCTAGGTTGCCGC
CGCCGCCACCGCCGTGCCCAGTCCTACGACCGGAGCTGAGCCCCCGAGAC
CGCTTACGCTTCCGGCCCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13975:33..352+

>mRNA_Ecto-sp13_S_contig13975.3097.1 ID=mRNA_Ecto-sp13_S_contig13975.3097.1|Name=mRNA_Ecto-sp13_S_contig13975.3097.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13975:33..352+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCGCGTCGGTGCTGCCCACATCGCCGTCCCTGTCTCCGCCGCCGCCACG
ACAATCGCCGTCAGAGTCGTCAGAGTCGTCCTCGTCCTGCGCGACCCCGG
ACAAGAACGCCGCCACGGCATCGTCAATCTCGTCGCCCCCCTCGCTAAGG
TCATCGTCCTCGTCGCCCTCGTCGTCTTCATCGCTGGTGCTATCGGCGCT
GTTGCTTTCGACGTCATCGTCGCTAAGTCCCGTTTCGCCTAGGTTGCCGC
CGCCGCCACCGCCGTGCCCAGTCCTACGACCGGAGCTGAGCCCCCGAGAC
CGCTTACGCTTCCGGCCC
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