mRNA_Ecto-sp13_S_contig13960.3089.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13960.3089.1
Unique NamemRNA_Ecto-sp13_S_contig13960.3089.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13960.3089.1 vs. uniprot
Match: D7FKM0_ECTSI (HECT-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKM0_ECTSI)

HSP 1 Score: 671 bits (1730), Expect = 1.350e-226
Identity = 390/471 (82.80%), Postives = 402/471 (85.35%), Query Frame = 1 
Query:    4 AQREGRARERLHVSSATTIQKIWRGRSCVGKWRQDERDAWDRKMHDVGRVKAMLAAAGKALQLPPAVLQTLLSELVHFHAFPCDAGRFRAAIDLVLAAAPASDSPATPEGAGLFAAQPASSGGSDSDRLLMDNTWSLLVTRLGAVSLQYMSQVSATAAAAGGRSRKNGAESRDNGGGRR-CKGDAMEDAEGVEVAVVAGEGSAEVGDAAAVAMRGFALLASPAAWRHRWPLSEPAVVQRRCRVFLASLALGRVLLGTRSKTGAEAGPGEALTKSSPRGRERG----GVRLLLRTERERVGGEGSRAPTLFGVLRVAWDAAAAEAGVGEGRATQTVRLLCASSFQVLGIGVAEDGESTARGETRPMSSSAVAXXXXXXXXXXXXXXXXXXXXXDRRRLLEAFAAAVLPAPRLLEHPLRAALMDPMLGGDGAAWWELVSVAGEAVGAGGTXXXXXXXXXXRDVAWAVANILEV 1401
            AQREGRARERLHVSSATTIQK+WRGRSCVGKWRQDERDAWDRKMHDVGRVKAMLAAAGKALQLPPAVLQ+LLS+LVHFHAFP DAGRFRAA+DLVLAAAPASD+  TP GAGLFAAQPASS GSD+DRLL DNTWSLLVTRLGAV LQYMSQVSATAAAAGGRSRKNGAESRD GGG   C+GDAM+DAE           SAEV DAA VAMRGFALLASPAAWRHRW LSEP  V+RRCRVFLASLALGRVL+ TRSKTG EAGPGEAL K SP          G+RL LRTERERVGGEGSRAPTLFGVLRVAWDAA AEAG GEGRATQ VRLLCASSFQ+LGIGVAEDGESTAR ETRPMSSSAVA                     DRRRLLEAFAAAVLPAPRLLEHPLRAALMDPMLGGDG AWWELVSVAGEAVGAGGT XXXXXXXXXRDVAWAVANILEV
Sbjct:   32 AQREGRARERLHVSSATTIQKVWRGRSCVGKWRQDERDAWDRKMHDVGRVKAMLAAAGKALQLPPAVLQSLLSQLVHFHAFPSDAGRFRAAMDLVLAAAPASDNATTPGGAGLFAAQPASSSGSDNDRLLGDNTWSLLVTRLGAVCLQYMSQVSATAAAAGGRSRKNGAESRDIGGGXXXCEGDAMDDAEXXXXXXXXXXXSAEVVDAAEVAMRGFALLASPAAWRHRWSLSEPVAVKRRCRVFLASLALGRVLMRTRSKTGEEAGPGEALRKPSPTXXXXXXXXEGLRLSLRTERERVGGEGSRAPTLFGVLRVAWDAAVAEAGGGEGRATQAVRLLCASSFQILGIGVAEDGESTARIETRPMSSSAVAGGGARAAAGPGGAHETAVP--DRRRLLEAFAAAVLPAPRLLEHPLRAALMDPMLGGDGVAWWELVSVAGEAVGAGGTGXXXXXXXXXRDVAWAVANILEV 500
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13960.3089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKM0_ECTSI1.350e-22682.80HECT-type E3 ubiquitin transferase n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13960contigEcto-sp13_S_contig13960:1698..4061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score684.5
Seed ortholog evalue3.5e-194
Seed eggNOG ortholog2880.D7FKM0
Model size1401
KEGG koko:K10589
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0032446,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564
Exons3
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsCOG5021@1,KOG0942@2759
Ec32 ortholog descriptionHECT
Ec32 orthologEc-09_000720.1
EC2.3.2.26
Cds size1401
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462745.0235379-CDS-Ecto-sp13_S_contig13960:1697..17771681462745.0235379-CDS-Ecto-sp13_S_contig13960:1697..1777Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13960 1698..1777 +
1681462745.0358677-CDS-Ecto-sp13_S_contig13960:2320..24291681462745.0358677-CDS-Ecto-sp13_S_contig13960:2320..2429Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13960 2321..2429 +
1681462745.0496407-CDS-Ecto-sp13_S_contig13960:2849..40611681462745.0496407-CDS-Ecto-sp13_S_contig13960:2849..4061Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13960 2850..4061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13960.3089.1prot_Ecto-sp13_S_contig13960.3089.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13960 1698..4061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13960.3089.1

>prot_Ecto-sp13_S_contig13960.3089.1 ID=prot_Ecto-sp13_S_contig13960.3089.1|Name=mRNA_Ecto-sp13_S_contig13960.3089.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=467bp
QAQREGRARERLHVSSATTIQKIWRGRSCVGKWRQDERDAWDRKMHDVGR
VKAMLAAAGKALQLPPAVLQTLLSELVHFHAFPCDAGRFRAAIDLVLAAA
PASDSPATPEGAGLFAAQPASSGGSDSDRLLMDNTWSLLVTRLGAVSLQY
MSQVSATAAAAGGRSRKNGAESRDNGGGRRCKGDAMEDAEGVEVAVVAGE
GSAEVGDAAAVAMRGFALLASPAAWRHRWPLSEPAVVQRRCRVFLASLAL
GRVLLGTRSKTGAEAGPGEALTKSSPRGRERGGVRLLLRTERERVGGEGS
RAPTLFGVLRVAWDAAAAEAGVGEGRATQTVRLLCASSFQVLGIGVAEDG
ESTARGETRPMSSSAVAEGGGGGGAVAVPGGAHETTAPDRRRLLEAFAAA
VLPAPRLLEHPLRAALMDPMLGGDGAAWWELVSVAGEAVGAGGTGGGGGA
AARRRDVAWAVANILEV
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mRNA from alignment at Ecto-sp13_S_contig13960:1698..4061+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13960.3089.1 ID=mRNA_Ecto-sp13_S_contig13960.3089.1|Name=mRNA_Ecto-sp13_S_contig13960.3089.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2364bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13960:1698..4061+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCCCAACGGGAGGGGCGGGCGCGTGAGCGGCTCCACGTCTCCAGCGC
GACAACAATCCAGAAGATTTGGAGGGGAAGGTGCGTGAGTCATTTTTCTC
ATTCACAGCGACCTGCCCATCCACCTGTTCCCCACCCACCCACATCTCGC
GTCAGCCTGCCCGCGGCACCATATCTGGAGGCGCTGTTCAGTTGTACATG
TATTCAACGCGGTACTGATTGGCTGAACTGCACCAATGGTTTCTTGTCAG
GGGAACAGACCACCAATCTCCGCCAGACACAGATTTCGCAGCGCTTGAGG
AAGGGTGTCTCCGGTGTCGTGCTGTCTTGACGCCGGGTCATACCGAAACC
AGAGGGCACCAGCAAGCCGCAAAGGCGTGCGTTGCGTCGAGGAGCAACTG
TCTCCCAGAAGTCGCAGTTGTCCGCTGGCGGTCGGGGTCGGTTCACAGGG
GACAGCAGGCACCGCAAGCTAACGCTACAACACTAGACATATGGCGCTCC
CTCGAGACACCGGTAGGCATGTGAGCGGCCAATAGCTATTGCTGTCGTCG
TTCGGTCAGTTATTTCGGTTGTCGCCGCCAACCGCGTGCTTCGCCCCCCC
CCCCCTTGGCCTTTATCGGATAGGTCATGCGTGGGAAAGTGGCGGCAAGA
CGAGCGCGATGCGTGGGACAGGAAGATGCACGACGTCGGGCGAGTGAAGG
CCATGCTTGCCGCGGCGGGAAAGGCGTTGCAGGTGAAGGAAGGCGTCTGG
AGTTTCTTTTCAGGTGTACGCGTGCACGGGGTTGATGTGCGTGGCTAGGT
CGTCCGCGTGGAAACAAATGCCTTTCGGCGTGTTTGTTACGGGGGTGATA
TGTCAATGGTGCCCCTCTTCGGCACTAGCATTCCTGCACGGGCTTGGCGT
TCACAAAATAGTGTGTACCCGGTGCAGCAGTACAATAACAAAACTTGGTG
CGACTCGCAGCGTTGTATCGATCCATGGTGTGATTGCCTCGCACTGTTCT
CCCCCAGATTTGCCACCAGTATGGAATGCGACGTTGTCTCTCCGGGTATG
GAGGTGCCCTCTAGGTCTGTGCTGCATCTCACGGAACCTCCCACCCGCAT
CCCCACCCCCGCCCTCCGCCCTATTCTCTTCTCGCTCCCACACCCAACGC
AGCTCCCACCAGCCGTTCTCCAGACCTTACTCTCTGAGCTGGTACACTTC
CACGCCTTCCCGTGCGATGCTGGCCGATTTCGCGCCGCCATAGACCTGGT
GCTTGCCGCCGCCCCCGCGAGCGATAGCCCCGCCACCCCAGAGGGCGCAG
GTCTCTTTGCGGCTCAGCCGGCGTCTTCCGGCGGCAGCGATAGCGACCGG
CTCTTGATGGACAACACGTGGTCGCTGCTGGTTACCCGGCTTGGGGCGGT
GTCCCTGCAGTACATGAGTCAGGTATCGGCAACGGCGGCGGCGGCAGGGG
GGCGGTCGCGGAAAAACGGCGCAGAAAGCCGGGACAACGGCGGCGGCCGC
CGCTGCAAAGGAGACGCCATGGAAGATGCTGAGGGCGTGGAGGTTGCTGT
AGTGGCCGGGGAGGGGTCGGCGGAGGTGGGCGATGCCGCGGCGGTGGCTA
TGCGGGGGTTCGCGTTGCTAGCTTCCCCGGCGGCGTGGCGGCATCGGTGG
CCGCTGTCCGAGCCGGCCGTTGTCCAGCGGCGTTGCCGCGTGTTTCTCGC
CTCGCTCGCGCTCGGCAGGGTGTTGCTGGGGACGCGGAGCAAGACGGGAG
CGGAGGCGGGGCCTGGAGAAGCGTTAACGAAATCCTCACCAAGAGGAAGA
GAAAGAGGAGGTGTTCGGTTGTTGCTACGGACGGAGAGGGAAAGGGTTGG
CGGCGAGGGGAGTCGAGCGCCGACGCTGTTCGGAGTCCTCCGTGTCGCGT
GGGACGCCGCAGCAGCAGAGGCCGGCGTGGGGGAGGGCAGAGCGACGCAA
ACGGTGCGGCTGCTGTGCGCGTCCTCCTTCCAGGTTCTGGGGATCGGTGT
CGCGGAGGACGGGGAGAGCACGGCGCGCGGCGAGACCCGTCCGATGTCGT
CATCAGCGGTGGCTGAAGGAGGAGGAGGAGGAGGAGCGGTTGCCGTGCCA
GGTGGCGCGCACGAAACGACGGCGCCGGACAGGCGACGACTGCTGGAGGC
GTTTGCGGCCGCCGTTCTGCCCGCGCCGAGGCTACTGGAGCACCCCCTGA
GGGCGGCCCTGATGGACCCGATGTTAGGGGGCGATGGGGCAGCGTGGTGG
GAGTTGGTGTCCGTGGCAGGGGAAGCCGTCGGGGCGGGGGGGACGGGGGG
AGGCGGCGGCGCTGCTGCCAGGAGAAGAGATGTCGCGTGGGCGGTCGCGA
ATATATTGGAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13960:1698..4061+

>mRNA_Ecto-sp13_S_contig13960.3089.1 ID=mRNA_Ecto-sp13_S_contig13960.3089.1|Name=mRNA_Ecto-sp13_S_contig13960.3089.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1401bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13960:1698..4061+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCCCAACGGGAGGGGCGGGCGCGTGAGCGGCTCCACGTCTCCAGCGC
GACAACAATCCAGAAGATTTGGAGGGGAAGGTCATGCGTGGGAAAGTGGC
GGCAAGACGAGCGCGATGCGTGGGACAGGAAGATGCACGACGTCGGGCGA
GTGAAGGCCATGCTTGCCGCGGCGGGAAAGGCGTTGCAGCTCCCACCAGC
CGTTCTCCAGACCTTACTCTCTGAGCTGGTACACTTCCACGCCTTCCCGT
GCGATGCTGGCCGATTTCGCGCCGCCATAGACCTGGTGCTTGCCGCCGCC
CCCGCGAGCGATAGCCCCGCCACCCCAGAGGGCGCAGGTCTCTTTGCGGC
TCAGCCGGCGTCTTCCGGCGGCAGCGATAGCGACCGGCTCTTGATGGACA
ACACGTGGTCGCTGCTGGTTACCCGGCTTGGGGCGGTGTCCCTGCAGTAC
ATGAGTCAGGTATCGGCAACGGCGGCGGCGGCAGGGGGGCGGTCGCGGAA
AAACGGCGCAGAAAGCCGGGACAACGGCGGCGGCCGCCGCTGCAAAGGAG
ACGCCATGGAAGATGCTGAGGGCGTGGAGGTTGCTGTAGTGGCCGGGGAG
GGGTCGGCGGAGGTGGGCGATGCCGCGGCGGTGGCTATGCGGGGGTTCGC
GTTGCTAGCTTCCCCGGCGGCGTGGCGGCATCGGTGGCCGCTGTCCGAGC
CGGCCGTTGTCCAGCGGCGTTGCCGCGTGTTTCTCGCCTCGCTCGCGCTC
GGCAGGGTGTTGCTGGGGACGCGGAGCAAGACGGGAGCGGAGGCGGGGCC
TGGAGAAGCGTTAACGAAATCCTCACCAAGAGGAAGAGAAAGAGGAGGTG
TTCGGTTGTTGCTACGGACGGAGAGGGAAAGGGTTGGCGGCGAGGGGAGT
CGAGCGCCGACGCTGTTCGGAGTCCTCCGTGTCGCGTGGGACGCCGCAGC
AGCAGAGGCCGGCGTGGGGGAGGGCAGAGCGACGCAAACGGTGCGGCTGC
TGTGCGCGTCCTCCTTCCAGGTTCTGGGGATCGGTGTCGCGGAGGACGGG
GAGAGCACGGCGCGCGGCGAGACCCGTCCGATGTCGTCATCAGCGGTGGC
TGAAGGAGGAGGAGGAGGAGGAGCGGTTGCCGTGCCAGGTGGCGCGCACG
AAACGACGGCGCCGGACAGGCGACGACTGCTGGAGGCGTTTGCGGCCGCC
GTTCTGCCCGCGCCGAGGCTACTGGAGCACCCCCTGAGGGCGGCCCTGAT
GGACCCGATGTTAGGGGGCGATGGGGCAGCGTGGTGGGAGTTGGTGTCCG
TGGCAGGGGAAGCCGTCGGGGCGGGGGGGACGGGGGGAGGCGGCGGCGCT
GCTGCCAGGAGAAGAGATGTCGCGTGGGCGGTCGCGAATATATTGGAGGT
G
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