mRNA_Ecto-sp13_S_contig13934.3073.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13934.3073.1
Unique NamemRNA_Ecto-sp13_S_contig13934.3073.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13934.3073.1 vs. uniprot
Match: D8LEH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEH2_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 9.070e-56
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 1
Query:  160 VYATARSFLPQLEEAGVKDSAHCLFTFPSGAVFTLEMTRCSAYGYDNRIEVMGEKGMLSLGNPPSSGLEFFDSTGCSTSPPEHSFPQRFREV 435
            VYATARSFLPQLEEAGVKDSAHCLFTFPSGAVFTLEMTRCSAYGYDNRIEVMGEKGMLSLGNPPSSGLEFFDSTGCSTSPPEHSFPQRFRE 
Sbjct:  231 VYATARSFLPQLEEAGVKDSAHCLFTFPSGAVFTLEMTRCSAYGYDNRIEVMGEKGMLSLGNPPSSGLEFFDSTGCSTSPPEHSFPQRFREA 322          
BLAST of mRNA_Ecto-sp13_S_contig13934.3073.1 vs. uniprot
Match: A0A7S1Z936_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z936_TRICV)

HSP 1 Score: 82.8 bits (203), Expect = 5.850e-16
Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 1
Query:  160 VYATARSFLPQLEEAGVKDSAHCLFTFPSGAVFTLEMTRCSAYGYDNRIEVMGEKGMLSLGNPPSSGLEFFDSTGCSTSPPEHSFPQRFREV 435
            VYAT  S   +LEEAG++D+A  +  F  GAV TL M+R S YGYD R E+ G++G++S+GN  +      D+ G       HSFPQRF   
Sbjct:   53 VYATGTSSRRELEEAGIQDNATMVMKFKKGAVVTLTMSRSSTYGYDQRCEIFGDRGLVSVGNDRAHNATLSDAAGTHGPKLAHSFPQRFERA 144          
BLAST of mRNA_Ecto-sp13_S_contig13934.3073.1 vs. uniprot
Match: M2W856_GALSU (Myo-inositol 2-dehydrogenase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W856_GALSU)

HSP 1 Score: 84.7 bits (208), Expect = 5.920e-16
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 1
Query:  160 VYATARSFLPQLEEAGVKDSAHCLFTFPSGAVFTLEMTRCSAYGYDNRIEVMGEKGMLSLGNPPSSGLEFFDSTGCSTSPPEHSFPQRFR 429
            VYATA S LP+L  +G+ D+A  L  F +GAV  L+  R + YGYD R+EV G+KGMLS+ N PS+G+ + +  G    P   SFPQR++
Sbjct:  197 VYATATSCLPELAGSGIYDTATALMEFKNGAVAMLDSARNACYGYDQRLEVFGDKGMLSVENFPSNGVTWCNENGIKKEPYVWSFPQRYQ 286          
BLAST of mRNA_Ecto-sp13_S_contig13934.3073.1 vs. uniprot
Match: UPI00105BC3AC (inositol 2-dehydrogenase n=1 Tax=Photorhabdus tasmaniensis TaxID=1004159 RepID=UPI00105BC3AC)

HSP 1 Score: 83.6 bits (205), Expect = 1.250e-15
Identity = 41/93 (44.09%), Postives = 61/93 (65.59%), Query Frame = 1
Query:  160 VYATARSFL-PQLEEAGVKDSAHCLFTFPSGAVFTLEMTRCSAYGYDNRIEVMGEKGMLSLGNPPSSGLEFFDSTGCSTSPPEHSFPQRFREV 435
            +YA   + + P + +AG  D+A  +  FPSGA+ T+  +R S YGYD RIE+ GEKG+LS GN   + +E +++TGC  + PEH F QR+R+ 
Sbjct:  189 IYAQGSNLVDPAIGQAGDIDTAFIVMKFPSGAMATITNSRRSGYGYDQRIELHGEKGLLSAGNLKENSVELWENTGCLAAKPEHFFLQRYRDA 281          
BLAST of mRNA_Ecto-sp13_S_contig13934.3073.1 vs. uniprot
Match: C7BPM0_PHOAA (Putative myo-inositol 2-dehydrogenase n=42 Tax=Photorhabdus TaxID=29487 RepID=C7BPM0_PHOAA)

HSP 1 Score: 82.8 bits (203), Expect = 2.370e-15
Identity = 40/95 (42.11%), Postives = 61/95 (64.21%), Query Frame = 1
Query:  154 HMVYATARSFL-PQLEEAGVKDSAHCLFTFPSGAVFTLEMTRCSAYGYDNRIEVMGEKGMLSLGNPPSSGLEFFDSTGCSTSPPEHSFPQRFREV 435
            + +YA   + + P + + G  D+A  +  FPSGA+  +  +R S YGYD RIE+ GEKG+LS GN   + +E ++++GC T+ PEH F QR+RE 
Sbjct:  187 YSIYAQGSNLVDPAIGQVGDIDTAFIVMKFPSGAIAAITNSRRSGYGYDQRIELHGEKGLLSAGNIKENSVELWENSGCLTAKPEHFFLQRYREA 281          
BLAST of mRNA_Ecto-sp13_S_contig13934.3073.1 vs. uniprot
Match: K3WJ44_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJ44_GLOUD)

HSP 1 Score: 83.2 bits (204), Expect = 2.890e-15
Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  160 VYATARSFLPQLEEAGVKDSAHCLFTFP-SGAVFTLEMTRCSAYGYDNRIEVMGEKGMLSLGNPPSSGLEFFDSTGCSTSPPEHSFPQRFREV 435
            VYA   S  P+L E  V D A     FP SG + T++++R + YGYD R+EV GEKGML + NPP + L    + G ++    HSFP+RFRE 
Sbjct:  237 VYAFGTSLSPELREVNVMDKASVWLEFPNSGVICTMDLSRSALYGYDQRVEVSGEKGMLQVVNPPKTSLVRASADGITSDVLSHSFPERFREA 329          
BLAST of mRNA_Ecto-sp13_S_contig13934.3073.1 vs. uniprot
Match: A0A7R9U697_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U697_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 3.380e-15
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  160 VYATARSFLPQLEEAGVKDSAHCLFTFPSGAVFTLEMTRCSAYGYDNRIEVMGEKGMLSLGNPPSSGLEFFDSTGCSTSPPEHSFPQRF 426
            +  +  SF+P+L+E  V D+A     FP G V TLE  R ++YGYD RIE+ G  GM  +GNPP S     +S G  +S  +HSFP+RF
Sbjct:  204 ILGSGTSFMPELKEVDVMDTASLHLEFPGGVVATLEADRFASYGYDQRIEIFGTGGMAQVGNPPQSSTFLANSAGLHSSRLKHSFPERF 292          
BLAST of mRNA_Ecto-sp13_S_contig13934.3073.1 vs. uniprot
Match: A0A068QP35_9GAMM (Inositol 2-dehydrogenase n=9 Tax=Xenorhabdus TaxID=626 RepID=A0A068QP35_9GAMM)

HSP 1 Score: 81.6 bits (200), Expect = 6.360e-15
Identity = 40/93 (43.01%), Postives = 61/93 (65.59%), Query Frame = 1
Query:  160 VYATARSFL-PQLEEAGVKDSAHCLFTFPSGAVFTLEMTRCSAYGYDNRIEVMGEKGMLSLGNPPSSGLEFFDSTGCSTSPPEHSFPQRFREV 435
            +YA A + + P +  AG  D+A  +  FPSGA+ T+  +R S YGYD R+E+ GEKG+L+ GN   + +EF+  +GC+ + PEH F QR+R+ 
Sbjct:  189 IYAQASNLVDPAIGLAGDIDTAFIVMKFPSGAMATITNSRRSGYGYDQRLELHGEKGLLTAGNIKENSVEFWGESGCTAAKPEHFFLQRYRDA 281          
BLAST of mRNA_Ecto-sp13_S_contig13934.3073.1 vs. uniprot
Match: A0A7S1DDD5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DDD5_CYCTE)

HSP 1 Score: 80.1 bits (196), Expect = 8.790e-15
Identity = 41/92 (44.57%), Postives = 54/92 (58.70%), Query Frame = 1
Query:  160 VYATARSFLPQLEEAGVKDSAHCLFTFPSGAVFTLEMTRCSAYGYDNRIEVMGEKGMLSLGNPPSSGLEFFDSTGCSTSPPEHSFPQRFREV 435
            VYAT  S   +L  AGV D+A  +  F  GA  TL M+R + YGYD R E+ G+KGM+S+GN  +    F +  G   S  +HSFPQRF + 
Sbjct:   98 VYATGTSSTDELAAAGVHDNATMVMKFSRGATVTLFMSRSATYGYDQRCEIFGDKGMISVGNEHAHSAIFSNGDGIHQSKLKHSFPQRFNQA 189          
BLAST of mRNA_Ecto-sp13_S_contig13934.3073.1 vs. uniprot
Match: A0A2D0L5H0_9GAMM (Dehydrogenase n=1 Tax=Xenorhabdus kozodoii TaxID=351676 RepID=A0A2D0L5H0_9GAMM)

HSP 1 Score: 80.5 bits (197), Expect = 1.640e-14
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 1
Query:  187 PQLEEAGVKDSAHCLFTFPSGAVFTLEMTRCSAYGYDNRIEVMGEKGMLSLGNPPSSGLEFFDSTGCSTSPPEHSFPQRFREV 435
            P +  AG  D+A  +  FPSGA+ T+  +R S YGYD R+E+ GEKG+LS GN   + +EF+   GC+T+ PE+ F QR+R+ 
Sbjct:  199 PAIGTAGDIDTAFIVMKFPSGAMATITNSRRSGYGYDQRLELHGEKGLLSAGNIKENSVEFWGENGCTTAKPEYFFLQRYRDA 281          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13934.3073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEH2_ECTSI9.070e-5698.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1Z936_TRICV5.850e-1644.57Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
M2W856_GALSU5.920e-1647.78Myo-inositol 2-dehydrogenase n=1 Tax=Galdieria sul... [more]
UPI00105BC3AC1.250e-1544.09inositol 2-dehydrogenase n=1 Tax=Photorhabdus tasm... [more]
C7BPM0_PHOAA2.370e-1542.11Putative myo-inositol 2-dehydrogenase n=42 Tax=Pho... [more]
K3WJ44_GLOUD2.890e-1545.16Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7R9U697_9STRA3.380e-1544.94Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A068QP35_9GAMM6.360e-1543.01Inositol 2-dehydrogenase n=9 Tax=Xenorhabdus TaxID... [more]
A0A7S1DDD5_CYCTE8.790e-1544.57Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A2D0L5H0_9GAMM1.640e-1445.78Dehydrogenase n=1 Tax=Xenorhabdus kozodoii TaxID=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13934contigEcto-sp13_S_contig13934:2194..3587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score193.0
Seed ortholog evalue1.3e-46
Seed eggNOG ortholog2880.D8LEH2
Model size602
KEGG rclassRC00182
KEGG koko:K00010
KEGG ReactionR01183,R09951
KEGG Pathwayko00521,ko00562,ko01100,ko01120,ko01130,map00521,map00562,map01100,map01120,map01130
Hectar predicted targeting categorymitochondrion
Exons3
EggNOG free text desc.D-xylose 1-dehydrogenase (NADP ) activity
EggNOG OGsCOG0673@1,KOG2741@2759
EC1.1.1.18,1.1.1.369
Cds size573
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462743.7519598-UTR-Ecto-sp13_S_contig13934:2193..22221681462743.7519598-UTR-Ecto-sp13_S_contig13934:2193..2222Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13934 2194..2222 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462743.7650096-CDS-Ecto-sp13_S_contig13934:2222..24861681462743.7650096-CDS-Ecto-sp13_S_contig13934:2222..2486Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13934 2223..2486 -
1681462743.7740183-CDS-Ecto-sp13_S_contig13934:3128..32781681462743.7740183-CDS-Ecto-sp13_S_contig13934:3128..3278Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13934 3129..3278 -
1681462743.783556-CDS-Ecto-sp13_S_contig13934:3428..35871681462743.783556-CDS-Ecto-sp13_S_contig13934:3428..3587Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13934 3429..3587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13934.3073.1prot_Ecto-sp13_S_contig13934.3073.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13934 2223..3587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13934.3073.1

>prot_Ecto-sp13_S_contig13934.3073.1 ID=prot_Ecto-sp13_S_contig13934.3073.1|Name=mRNA_Ecto-sp13_S_contig13934.3073.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=191bp
MYSTARRFASTFFCSAAQTPPVATRPERLRALGPLHSVSSAAPDRGTPPA
NHMVYATARSFLPQLEEAGVKDSAHCLFTFPSGAVFTLEMTRCSAYGYDN
RIEVMGEKGMLSLGNPPSSGLEFFDSTGCSTSPPEHSFPQRFREVNTRAL
HGRFFFHGAERLRPLRSDSVRFVRFQLRKTAPLRENFALG*
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mRNA from alignment at Ecto-sp13_S_contig13934:2194..3587-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13934.3073.1 ID=mRNA_Ecto-sp13_S_contig13934.3073.1|Name=mRNA_Ecto-sp13_S_contig13934.3073.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1394bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13934:2194..3587- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACTCGACAGCCAGGCGCTTCGCCAGCACATTTTTCTGCTCCGCAGC ACAAACACCTCCCGTTGCAACACGTCCCGAGCGGCTGCGTGCCTTGGGAC CCTTACATTCAGTCTCCTCCGCGGCTCCCGATCGGGGGACCCCACCTGCG AATCACATGGTATAATATACATATAGCGTCGTTCGCGCGCCGGTCATCAC CCCTCCAAGATTGATGTCTTTTTCGCCGGCCAGCCACCTGGCGCGGCCGA AAAGCACGGGCAGTTACAACTGGCTCCCTCCTCTCTCTCCTCTGTGACGT TTGCGGCAGGTTTACGCCACCGCCCGGTCCTTCCTGCCGCAGCTGGAGGA GGCCGGCGTGAAGGACTCGGCGCACTGCCTCTTCACGTTCCCCTCGGGCG CCGTGTTCACCCTGGAGATGACCCGGTGCAGCGCGTACGGCTACGACAAC CGAATCGAGGTCCGAAAGAAGAAAATCGCTGGATGGTATTATCTTCTTTT CCTTTCGCTGACTGAAAATCCCGTCCGTCCGGTGGCATGCTGGTCCCACA ACGCTACAGACAGGCTAGACGTGGCCGCGGCGGTAGTGCGGGGAGGCAAT GCGGGCACGCCTTGCTGGAAATGCTCGGTCGCGTGGAGGGTGTTGCTGTG TAACGCCCGGTAGTAGGGAGGCAATGCGGGCACGCCTTGCTTGAAATGCT TGGTCGCGTGCAAGGTGTTGCTGTGTAACGCCCGTCCCCGGGAGGGAGTA CCGCGATCGGTGCGGTGATCATGTCGAAACCCGTCCGGAAATCGCGGACG AAGATGATTCGTGCCGAGCATGAACAGGTTCCCTGCCCCTCACAAGCCTC TACAATGAACACTTGCGTCGGCCCGACGTGCCATATTCATGAGAATAGTA GGCTAGACTAAAAAGAAAAGGAAATCAAGCGTTTTGTCGCTGTGTACATG CACGCAACGCCTTTGAAAACCAGAGACACTAGTCGATCTTACCTTATTCG CTCCTGATGAGTTCCTCCCTTCGTTGAGCTTCCACCAACCCGGCGTGTCC CGTATCGGTGTTGCTGCCAAATACCTCGGCGAATCGTTCGTGCGCATGCA GGTCATGGGCGAGAAAGGCATGCTGAGCTTAGGGAATCCGCCTAGCTCCG GGCTGGAGTTCTTCGACAGCACGGGGTGCTCGACGTCGCCCCCCGAGCAT TCCTTCCCGCAGCGATTCCGTGAGGTAAACACCAGGGCTTTGCACGGACG GTTTTTTTTCCATGGAGCGGAGCGGCTAAGACCGCTCCGCAGCGATTCCG TGAGATTCGTGAGATTTCAATTAAGAAAAACCGCCCCGCTTCGTGAGAAT TTTGCCCTTGGATAAATCGCTCCGCTCTGCTTCGTGGGATTTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13934:2194..3587-

>mRNA_Ecto-sp13_S_contig13934.3073.1 ID=mRNA_Ecto-sp13_S_contig13934.3073.1|Name=mRNA_Ecto-sp13_S_contig13934.3073.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=573bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13934:2194..3587- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACTCGACAGCCAGGCGCTTCGCCAGCACATTTTTCTGCTCCGCAGC
ACAAACACCTCCCGTTGCAACACGTCCCGAGCGGCTGCGTGCCTTGGGAC
CCTTACATTCAGTCTCCTCCGCGGCTCCCGATCGGGGGACCCCACCTGCG
AATCACATGGTTTACGCCACCGCCCGGTCCTTCCTGCCGCAGCTGGAGGA
GGCCGGCGTGAAGGACTCGGCGCACTGCCTCTTCACGTTCCCCTCGGGCG
CCGTGTTCACCCTGGAGATGACCCGGTGCAGCGCGTACGGCTACGACAAC
CGAATCGAGGTCATGGGCGAGAAAGGCATGCTGAGCTTAGGGAATCCGCC
TAGCTCCGGGCTGGAGTTCTTCGACAGCACGGGGTGCTCGACGTCGCCCC
CCGAGCATTCCTTCCCGCAGCGATTCCGTGAGGTAAACACCAGGGCTTTG
CACGGACGGTTTTTTTTCCATGGAGCGGAGCGGCTAAGACCGCTCCGCAG
CGATTCCGTGAGATTCGTGAGATTTCAATTAAGAAAAACCGCCCCGCTTC
GTGAGAATTTTGCCCTTGGATAA
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