mRNA_Ecto-sp13_S_contig13917.3059.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13917.3059.1 vs. uniprot
Match: D7FZN1_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZN1_ECTSI) HSP 1 Score: 499 bits (1285), Expect = 5.800e-169 Identity = 264/301 (87.71%), Postives = 269/301 (89.37%), Query Frame = 1
Query: 271 RGRPVVPTRTLAVGDESAALGKTAGASAEGLLGVEDAREALRSLFGHDDFRDGQ--------------------------EEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFARAARANARLALTATATPKVAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDDQEERARLLADILLRGEHQQQGSGT 1095
+GR +V TRTLAVGDESAA GKT GASAEGLLG+EDAREALRSLFGHDDFRDGQ EEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKG+KVALFVVDEAHCISEWGHNFRPDYLRLADFA+AARANARLALTATATPKVAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDDQEERARLLADILLRGEH QQG GT
Sbjct: 9 KGRLIVSTRTLAVGDESAAPGKTEGASAEGLLGMEDAREALRSLFGHDDFRDGQAKDQHSRRWYALVYKPGLSFQTSTKEEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKGIKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAARANARLALTATATPKVAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDDQEERARLLADILLRGEHHQQGRGT 309
BLAST of mRNA_Ecto-sp13_S_contig13917.3059.1 vs. uniprot
Match: A0A6H5JUW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW0_9PHAE) HSP 1 Score: 348 bits (894), Expect = 2.850e-110 Identity = 197/281 (70.11%), Postives = 200/281 (71.17%), Query Frame = 1
Query: 481 FPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQT-------------------------------------------DALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKGVKVALFVVDEAHCISE---------------------------------WGHNFRPDYLRLADFARAARANARLALTATATPKVAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDDQEERARLLADILLRGEHQQQGSGT 1095
FPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQ D L AGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTL+GVKVALFVVDEAHCISE WGHNFRPDYLRLADFA+AARANARLALTA ATP+VAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDDQEERARLLADILLRGEHQQQGSGT
Sbjct: 39 FPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQVWYMLLNHNLFSLLSARQDIALCRGQLTVLVLLWMGLGTIAGVKDKLGPAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLQGVKVALFVVDEAHCISEGRVCCGAQRQMPLPVEAKRTSTEPVLHLLVSPQWGHNFRPDYLRLADFAKAARANARLALTAAATPQVAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDDQEERARLLADILLRGEHQQQGSGT 319
BLAST of mRNA_Ecto-sp13_S_contig13917.3059.1 vs. uniprot
Match: A0A835Z8G9_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G9_9STRA) HSP 1 Score: 265 bits (677), Expect = 5.820e-78 Identity = 148/264 (56.06%), Postives = 167/264 (63.26%), Query Frame = 1
Query: 376 DAREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKGV------------------------------------KVALFVVDEAHCISEWGHNFRPDYLRLADFARAARANARLALTATATPKVAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDDQEERARLLADIL 1059
D AL+ FG+D+FRDGQEEVV LL S A + PTGAGKS+CYQLPG ++AR G G T+VVSPLIALMKDQ AL A G+PCA+LDS+L+A D Y+ +R G LLYVSPERFNNERF KG +VALFVVDEAHCISEWGHNFRPDYLRLA FARAA A A LALTATATP+VA D+ RL I +V RTP +R L L A RAPD EER LA L
Sbjct: 50 DVHAALKYYFGYDEFRDGQEEVVRLLLQQRSAAAILPTGAGKSLCYQLPGLVLARAGRGTTVVVSPLIALMKDQAQALAARGLPCARLDSSLDAAVARDAYDMVRRGRAGLLYVSPERFNNERFASAFKGALVHFARWAQLRTVERRGAAARARISSEAGLGALSKARVALFVVDEAHCISEWGHNFRPDYLRLAAFARAAGAAATLALTATATPRVAADMCARLAIAQHDVVRTPLHRAELALRAARAPDALEERVAALAARL 313
BLAST of mRNA_Ecto-sp13_S_contig13917.3059.1 vs. uniprot
Match: X0SQ01_9ZZZZ (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0SQ01_9ZZZZ) HSP 1 Score: 237 bits (605), Expect = 6.230e-73 Identity = 128/232 (55.17%), Postives = 159/232 (68.53%), Query Frame = 1
Query: 373 EDAREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFARAARANARLALTATATPKVAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDDQEERARLLADILLRG 1068
E AR+ L+ +FG + FRDGQE VV +LL+G S +FPTG GKS+CYQLP ++ GLTLV+SPLIALMKDQ D L++ G P A+LDS+L E +++ + AG + LLYVSPER NERF+R+L K+AL VDEAHCISEWGHNFRPDYL++A+ AR LALTATATP+VA DIA I P +V T FYRP LTL +P + ER D+LL G
Sbjct: 14 EHARKTLKEVFGFEGFRDGQEAVVMRLLSGRSVLAIFPTGGGKSLCYQLPSLVLD----GLTLVISPLIALMKDQLDFLVSRGAPAARLDSSLSREETLAVHDAMNAGRLKLLYVSPERLGNERFLRSLARRKIALLAVDEAHCISEWGHNFRPDYLKIAEIARQLGVERVLALTATATPQVAGDIAQGFGIAPGDVVNTGFYRPNLTLYV--SPCEAAERD----DLLLAG 235
BLAST of mRNA_Ecto-sp13_S_contig13917.3059.1 vs. uniprot
Match: A0A432UW22_9GAMM (RecQ family ATP-dependent DNA helicase n=1 Tax=Thiothrix sp. TaxID=1032 RepID=A0A432UW22_9GAMM) HSP 1 Score: 241 bits (614), Expect = 2.790e-70 Identity = 133/231 (57.58%), Postives = 159/231 (68.83%), Query Frame = 1
Query: 376 DAREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFARAARANARLALTATATPKVAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDDQEERAR-LLADILLR 1065
D AL+ FG D FR GQ EV+ LLAG S A VFPTGAGKS+CYQLP L+ G+TLVVSPLIALMKDQ DAL A G+ +LDSTL+A ++ Q+R G + +LYV+PERFNNERF ++G++++LF VDEAHCISEWGHNFRPDYL+LA +AR A LALTATAT +V DI DI P RT FYRP LTL + P ++ ER LLA IL R
Sbjct: 4 DFESALKQHFGFDTFRPGQLEVMEHLLAGNSAAAVFPTGAGKSLCYQLPALLLP----GVTLVVSPLIALMKDQIDALAARGIAARQLDSTLDAQTYREVMTQVRGGELRMLYVAPERFNNERFREAIRGIQISLFAVDEAHCISEWGHNFRPDYLKLAGYAREFSAERVLALTATATEQVLEDIRAGFDISPDCAVRTGFYRPNLTL--LMTPVNEGERDEYLLAQILER 228
BLAST of mRNA_Ecto-sp13_S_contig13917.3059.1 vs. uniprot
Match: A0A3D2Z062_9BACT (RecQ family ATP-dependent DNA helicase n=1 Tax=Candidatus Latescibacteria bacterium TaxID=2053570 RepID=A0A3D2Z062_9BACT) HSP 1 Score: 240 bits (612), Expect = 5.060e-70 Identity = 129/228 (56.58%), Postives = 157/228 (68.86%), Query Frame = 1
Query: 376 DAREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFARAARANARLALTATATPKVAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDDQEERARLLADIL 1059
D R L+ FG DDF GQ +VV +LLAG S A VFPTG GKS+CYQLP ++ GLTLVVSPLIALMKDQ DAL G+ A+LDS+L+ + + + IR+G + LLYV+PERFNNERF + ++G+ ++LF VDEAHCISEWGHNFRPDYL+LA FAR +A LALTATATP+V DI DI P + RT FYRP L L + P ER L D+L
Sbjct: 4 DPRMTLKQQFGFDDFLPGQADVVERLLAGHSTAAVFPTGGGKSLCYQLPSLMLP----GLTLVVSPLIALMKDQIDALQRRGITAARLDSSLDKDQYRSVMDGIRSGQLRLLYVAPERFNNERFRQAIEGIAISLFAVDEAHCISEWGHNFRPDYLKLAGFARQFQAERILALTATATPRVLDDICAGFDIHPEHAVRTGFYRPNLLLRST--PVRVAERDGALLDVL 225
BLAST of mRNA_Ecto-sp13_S_contig13917.3059.1 vs. uniprot
Match: A0A833IRD6_9GAMM (RecQ family ATP-dependent DNA helicase n=1 Tax=Alkalilimnicola sp. S0819 TaxID=2613922 RepID=A0A833IRD6_9GAMM) HSP 1 Score: 240 bits (612), Expect = 5.270e-70 Identity = 129/226 (57.08%), Postives = 155/226 (68.58%), Query Frame = 1
Query: 382 REALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFARAARANARLALTATATPKVAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDDQEERARLLADIL 1059
R+AL+ FG D FR GQ VV LLAG+S A VFPTG GKS+CYQLP L+ G+TLVVSPLIALMKDQ DAL A G+ +LDS+L A E + +++RAG++ +LYV+PERFNNERF + ++ALF VDEAHCISEWGHNFRPDYL+LA +AR +A LALTATATP+V DI DI P RT FYRP L L + D E R +L D L
Sbjct: 6 RDALQQYFGFDQFRPGQAPVVDHLLAGQSAAAVFPTGGGKSLCYQLPALLLP----GVTLVVSPLIALMKDQIDALAARGIAARRLDSSLSAEEYRAVMDEVRAGTLRILYVAPERFNNERFRAAIARTRIALFAVDEAHCISEWGHNFRPDYLKLAGYARELQAERVLALTATATPQVLEDICRLFDIRPECAVRTGFYRPNLQLLSTVVSD--ENRDLMLLDAL 225
BLAST of mRNA_Ecto-sp13_S_contig13917.3059.1 vs. uniprot
Match: A0A2E9MGE8_9BACT (RecQ family ATP-dependent DNA helicase n=3 Tax=root TaxID=1 RepID=A0A2E9MGE8_9BACT) HSP 1 Score: 239 bits (610), Expect = 9.730e-70 Identity = 126/208 (60.58%), Postives = 146/208 (70.19%), Query Frame = 1
Query: 376 DAREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFARAARANARLALTATATPKVAVDIANRLDIPPSNVNRTPFYRPMLTL 999
DAR AL+ F DDFR GQ E V LLAG S A VFPTG GKS+CYQLP L+ GLTLVVSPLIALMKDQ DAL G+ A+LDS+L E + + +R+G + LLYV+PERFNNERF + G++++LF VDEAHCISEWGHNFRPDYL+LA FAR A LALTATATP+V DI DI P + RT FYRP L L
Sbjct: 4 DARAALKQHFDFDDFRPGQGEAVGHLLAGHSTAAVFPTGGGKSLCYQLPALLLP----GLTLVVSPLIALMKDQIDALQRRGIEAARLDSSLSLDEYRSVMDGVRSGQLRLLYVAPERFNNERFREAISGIRISLFAVDEAHCISEWGHNFRPDYLKLAGFARQYEAERVLALTATATPRVLDDICAGFDIRPEHAVRTGFYRPNLGL 207
BLAST of mRNA_Ecto-sp13_S_contig13917.3059.1 vs. uniprot
Match: UPI001951ACB3 (RecQ family ATP-dependent DNA helicase n=1 Tax=Archangium violaceum TaxID=83451 RepID=UPI001951ACB3) HSP 1 Score: 238 bits (608), Expect = 1.870e-69 Identity = 123/229 (53.71%), Postives = 157/229 (68.56%), Query Frame = 1
Query: 379 AREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFARAARANARLALTATATPKVAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDDQEERARLLADILLR 1065
A + L S+FG DFR+GQE VV++LL S VFPTGAGKS+CYQLP ++ G+TLV+SPLIALMKDQ D L G+P A+LDSTL E+ +Y +RAG++ LLYV+PER NERF++TL+ +++A+ VDEAHCISEWGHNFRPDY++LA AR + LALTATATP VA DIA DI +V +T F+RP L+L E R LL+ + R
Sbjct: 4 ASQVLHSVFGFPDFREGQEAVVSRLLESRSVLAVFPTGAGKSLCYQLPALMLE----GVTLVISPLIALMKDQIDFLTRRGIPAARLDSTLGPEEIRQLYSDLRAGTLKLLYVAPERLANERFLQTLRRLRIAMLAVDEAHCISEWGHNFRPDYMKLASLARTLKVERVLALTATATPSVARDIAAAFDIAAGDVIQTGFHRPNLSLHVTPTQGGDERRELLLSRLRSR 228
BLAST of mRNA_Ecto-sp13_S_contig13917.3059.1 vs. uniprot
Match: UPI0003A27C71 (RecQ family ATP-dependent DNA helicase n=1 Tax=Marinobacterium rhizophilum TaxID=420402 RepID=UPI0003A27C71) HSP 1 Score: 238 bits (607), Expect = 2.520e-69 Identity = 126/215 (58.60%), Postives = 149/215 (69.30%), Query Frame = 1
Query: 379 AREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFARAARANARLALTATATPKVAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDD 1023
A E L++ FG + FRDGQ+ + KLLAGES VFPTG GKS+CYQLP L+ GLTLVVSPLIALM+DQ AL A G+ A+LDS+ EV +IY Q+R G + LLYV+PER NERF+ LK +++AL VDEAHCISEWGHNFRPDYL+LA A+ RA LALTATATP VA DI + IP +N T FYRP L LG DD
Sbjct: 4 ALEILKTTFGLEAFRDGQQAAIDKLLAGESVLTVFPTGGGKSLCYQLPALLIE----GLTLVVSPLIALMQDQVAALHARGIAAARLDSSRTGDEVREIYRQLRRGELKLLYVAPERLQNERFLSLLKDLRIALLAVDEAHCISEWGHNFRPDYLKLAQLAQTLRAQRVLALTATATPSVAEDICRQFGIPAANHIHTGFYRPNLALGVTPCRDD 214 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13917.3059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13917.3059.1 >prot_Ecto-sp13_S_contig13917.3059.1 ID=prot_Ecto-sp13_S_contig13917.3059.1|Name=mRNA_Ecto-sp13_S_contig13917.3059.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=358bp MVTHRLRIMMTLVPILSRLEGRAIALAAARYPRLNSALPTASNAPGAATGback to top mRNA from alignment at Ecto-sp13_S_contig13917:57..4566+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13917.3059.1 ID=mRNA_Ecto-sp13_S_contig13917.3059.1|Name=mRNA_Ecto-sp13_S_contig13917.3059.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13917:57..4566+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13917:57..4566+ >mRNA_Ecto-sp13_S_contig13917.3059.1 ID=mRNA_Ecto-sp13_S_contig13917.3059.1|Name=mRNA_Ecto-sp13_S_contig13917.3059.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1074bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13917:57..4566+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |