mRNA_Ecto-sp13_S_contig13887.3038.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13887.3038.1
Unique NamemRNA_Ecto-sp13_S_contig13887.3038.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13887.3038.1 vs. uniprot
Match: A0A6H5JXE6_9PHAE (Calcium-transporting ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXE6_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 2.310e-59
Identity = 100/104 (96.15%), Postives = 102/104 (98.08%), Query Frame = 1
Query:    1 GDVVVMKPGDGIPADGLLFAGEGVKSNESGLTGEPDDLTKRAEADCFLYSSCMLTEVSQSADCKMMVHSVGEHSQWGLIRATLVSEPQQTPMQEKLDNMAKLIG 312
            GDVV+MKPGDGIPADGLLFAGEGVKSNESGLTGEPDDLTKRAEADCFLYSSCMLTEV QSADCKMMVHSVGE SQWGLIRATLVSEPQQTP+QEKLDNMAKLIG
Sbjct:  213 GDVVIMKPGDGIPADGLLFAGEGVKSNESGLTGEPDDLTKRAEADCFLYSSCMLTEVGQSADCKMMVHSVGEQSQWGLIRATLVSEPQQTPLQEKLDNMAKLIG 316          
BLAST of mRNA_Ecto-sp13_S_contig13887.3038.1 vs. uniprot
Match: A0A835ZDK6_9STRA (Calcium-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDK6_9STRA)

HSP 1 Score: 142 bits (357), Expect = 4.570e-37
Identity = 69/105 (65.71%), Postives = 86/105 (81.90%), Query Frame = 1
Query:    1 GDVVVMKPGDGIPADGLLFAGEGVKSNESGLTGEPDDLTKRAE-ADCFLYSSCMLTEVSQSADCKMMVHSVGEHSQWGLIRATLVSEPQQTPMQEKLDNMAKLIG 312
            GDVV++K GD IPADG++F GEGVK NESGLTGEPDDL KR + ++ FL+SSC++TEV  S+D K++V  VG HS+WG IRATL SEP +TP+Q+KLD MA LIG
Sbjct:  262 GDVVLLKAGDSIPADGIIFEGEGVKCNESGLTGEPDDLEKRPDGSNPFLFSSCLVTEVGNSSDAKIVVTGVGTHSEWGKIRATLTSEPSETPLQQKLDVMATLIG 366          
BLAST of mRNA_Ecto-sp13_S_contig13887.3038.1 vs. uniprot
Match: A0A835ZLB8_9STRA (Calcium-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLB8_9STRA)

HSP 1 Score: 139 bits (350), Expect = 4.010e-36
Identity = 67/105 (63.81%), Postives = 86/105 (81.90%), Query Frame = 1
Query:    1 GDVVVMKPGDGIPADGLLFAGEGVKSNESGLTGEPDDLTKRAEA-DCFLYSSCMLTEVSQSADCKMMVHSVGEHSQWGLIRATLVSEPQQTPMQEKLDNMAKLIG 312
            GDVV++K GD IPADG++F GEGV+SNESGLTGEPDDL KR +  + F++SSC++TEV  S+D K++V +VGE S+WG IRATL SEP +TP+Q KLD MA +IG
Sbjct:  242 GDVVMLKAGDSIPADGIIFEGEGVRSNESGLTGEPDDLDKRPDGKNPFVFSSCLITEVGNSSDAKILVTAVGERSEWGKIRATLTSEPTETPLQVKLDAMATMIG 346          
BLAST of mRNA_Ecto-sp13_S_contig13887.3038.1 vs. uniprot
Match: A0A482RUJ4_9ARCH (Cation_ATPase_N domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUJ4_9ARCH)

HSP 1 Score: 117 bits (294), Expect = 2.230e-30
Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = 1
Query:    1 GDVVVMKPGDGIPADGLLFAGEGVKSNESGLTGEPDDLTKRAEADCFLYSSCMLTEVSQSADCKMMVHSVGEHSQWGLIRATLVSEPQQTPMQEKLDNMAKLIG 312
            GD++V++ GD IPAD +L     VKSNES LTGEPDDL K+ + DCFL SSC++TE     DCK +V  +G HSQWG I+A LVSE   TP+Q+KL++MA ++ 
Sbjct:  156 GDILVLQAGDSIPADCVLIDRSVVKSNESSLTGEPDDLKKQKDKDCFLLSSCLITE---GEDCKALVIGIGTHSQWGKIKANLVSEAVNTPLQDKLEDMATMVS 256          
BLAST of mRNA_Ecto-sp13_S_contig13887.3038.1 vs. uniprot
Match: A0A7S3HTD8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTD8_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.040e-28
Identity = 54/104 (51.92%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    1 GDVVVMKPGDGIPADGLLFAGEGVKSNESGLTGEPDDLTKRAEADCFLYSSCMLTEVSQSADCKMMVHSVGEHSQWGLIRATLVSEPQQTPMQEKLDNMAKLIG 312
            GD++V++ GD IPAD +LF  + V +NES LTGEPDDL K    DCFL SSC++TE     +C+ +V  +G HSQWG I+A LV+E   TP+Q+KL+ M K +G
Sbjct:  190 GDILVLQAGDAIPADSILFTKDFVLANESSLTGEPDDLKKNHAKDCFLLSSCLVTE---GEECRALVIGIGMHSQWGKIKANLVTETVNTPLQDKLEEMTKQVG 290          
BLAST of mRNA_Ecto-sp13_S_contig13887.3038.1 vs. uniprot
Match: A0A482SLW1_9ARCH (Cation_ATPase_N domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SLW1_9ARCH)

HSP 1 Score: 112 bits (280), Expect = 2.240e-28
Identity = 54/104 (51.92%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    1 GDVVVMKPGDGIPADGLLFAGEGVKSNESGLTGEPDDLTKRAEADCFLYSSCMLTEVSQSADCKMMVHSVGEHSQWGLIRATLVSEPQQTPMQEKLDNMAKLIG 312
            GD+VV++ GD IPAD ++     V +NES LTGEPDDL K+ + DCFL SSC++TE     DC+ +V  +G  SQWG I+A LVSE   TP+Q+KL++MAK + 
Sbjct:  160 GDIVVLQAGDAIPADSIILDKVVVLANESSLTGEPDDLKKQRDKDCFLLSSCLITE---GEDCRALVIGIGTRSQWGKIKANLVSESVNTPLQDKLEDMAKFVS 260          
BLAST of mRNA_Ecto-sp13_S_contig13887.3038.1 vs. uniprot
Match: A0A7S2VWE4_9STRA (Calcium-transporting ATPase n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VWE4_9STRA)

HSP 1 Score: 115 bits (288), Expect = 9.280e-28
Identity = 57/104 (54.81%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    1 GDVVVMKPGDGIPADGLLFAGEGVKSNESGLTGEPDDLTKRAEADCFLYSSCMLTEVSQSADCKMMVHSVGEHSQWGLIRATLVSEPQQTPMQEKLDNMAKLIG 312
            GDVV +K GDGIPADG++F G GVK NES LTGEPDDL K  + D F  SS ++T+   S D K++   +G++SQWG I+A LV E   TP+QE+L+ M  LIG
Sbjct:  220 GDVVSLKSGDGIPADGVMFEGGGVKCNESALTGEPDDLKKDLKNDPFFLSSTVVTDTGTSGDAKVICVGIGKNSQWGKIKANLVVEEVNTPLQERLEEMVTLIG 323          
BLAST of mRNA_Ecto-sp13_S_contig13887.3038.1 vs. uniprot
Match: A0A7S3HT93_9STRA (Calcium-transporting ATPase n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HT93_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.270e-27
Identity = 55/104 (52.88%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    1 GDVVVMKPGDGIPADGLLFAGEGVKSNESGLTGEPDDLTKRAEADCFLYSSCMLTEVSQSADCKMMVHSVGEHSQWGLIRATLVSEPQQTPMQEKLDNMAKLIG 312
            GD++V++ GD IPAD +LF  + V +NES LTGEPDDL K    DCFL SSC++TE     +C+ +V  +G HSQWG I+A LVSE   TP+Q+KL+ M K +G
Sbjct:  190 GDILVLQAGDAIPADSILFTKDFVLANESSLTGEPDDLKKNHAKDCFLLSSCLVTE---GEECRALVIGIGMHSQWGKIKANLVSEAVNTPLQDKLEEMTKQVG 290          
BLAST of mRNA_Ecto-sp13_S_contig13887.3038.1 vs. uniprot
Match: A0A482SLK7_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SLK7_9ARCH)

HSP 1 Score: 105 bits (263), Expect = 1.410e-27
Identity = 53/98 (54.08%), Postives = 68/98 (69.39%), Query Frame = 1
Query:    7 VVVMKPGDGIPADGLLFAGEGVKSNESGLTGEPDDLTKRAEADCFLYSSCMLTEVSQSADCKMMVHSVGEHSQWGLIRATLVSEPQQTPMQEKLDNMA 300
            ++V++ GD IPAD +L     V SNES LTGEPDDL K  + DCFL SSC++TE     DCK +V  +G  SQWG I+A LV+E   TP+Q+KL+NMA
Sbjct:    7 ILVLQAGDSIPADCILIDKAVVLSNESSLTGEPDDLKKTRDKDCFLLSSCLITE---GEDCKALVIGIGTRSQWGKIKANLVTEAVNTPLQDKLENMA 101          
BLAST of mRNA_Ecto-sp13_S_contig13887.3038.1 vs. uniprot
Match: W7TSK5_9STRA (Calcium-transporting ATPase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSK5_9STRA)

HSP 1 Score: 113 bits (282), Expect = 5.990e-27
Identity = 56/104 (53.85%), Postives = 74/104 (71.15%), Query Frame = 1
Query:    1 GDVVVMKPGDGIPADGLLFAGEGVKSNESGLTGEPDDLTKRAEADCFLYSSCMLTEVSQSADCKMMVHSVGEHSQWGLIRATLVSEPQQTPMQEKLDNMAKLIG 312
            GD++ +K GDGIPADG+L  G+GVK NES LTGEP+DL K+ + D FL SS +LT+   S +  + V +VG  SQWG IRA LV +   TP+QEKL++ A +IG
Sbjct:  204 GDLIKLKAGDGIPADGILVDGDGVKVNESSLTGEPEDLLKKVDKDPFLLSSSLLTDQGSSPEIFIFVIAVGPRSQWGKIRANLVQDSTPTPLQEKLEHAATVIG 307          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13887.3038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXE6_9PHAE2.310e-5996.15Calcium-transporting ATPase n=2 Tax=Ectocarpus Tax... [more]
A0A835ZDK6_9STRA4.570e-3765.71Calcium-transporting ATPase n=1 Tax=Tribonema minu... [more]
A0A835ZLB8_9STRA4.010e-3663.81Calcium-transporting ATPase n=1 Tax=Tribonema minu... [more]
A0A482RUJ4_9ARCH2.230e-3054.81Cation_ATPase_N domain-containing protein n=1 Tax=... [more]
A0A7S3HTD8_9STRA1.040e-2851.92Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A482SLW1_9ARCH2.240e-2851.92Cation_ATPase_N domain-containing protein n=1 Tax=... [more]
A0A7S2VWE4_9STRA9.280e-2854.81Calcium-transporting ATPase n=1 Tax=Triparma pacif... [more]
A0A7S3HT93_9STRA1.270e-2752.88Calcium-transporting ATPase n=2 Tax=Spumella elong... [more]
A0A482SLK7_9ARCH1.410e-2754.08Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
W7TSK5_9STRA5.990e-2753.85Calcium-transporting ATPase n=2 Tax=Monodopsidacea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13887contigEcto-sp13_S_contig13887:2078..3344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score198.4
Seed ortholog evalue1.6e-48
Seed eggNOG ortholog2880.D7G3Y5
Model size313
KEGG koko:K01537,ko:K05850
KEGG TC3.A.3.2
KEGG Pathwayko04020,ko04022,ko04024,ko04261,ko04925,ko04970,ko04972,map04020,map04022,map04024,map04261,map04925,map04970,map04972
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.calcium-transporting ATPase activity
EggNOG OGsCOG0474@1,KOG0204@2759
EC3.6.3.8
Cds size297
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462740.9881153-CDS-Ecto-sp13_S_contig13887:2077..22371681462740.9881153-CDS-Ecto-sp13_S_contig13887:2077..2237Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13887 2078..2237 -
1681462740.9997451-CDS-Ecto-sp13_S_contig13887:3192..33291681462740.9997451-CDS-Ecto-sp13_S_contig13887:3192..3329Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13887 3193..3329 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462741.0099766-UTR-Ecto-sp13_S_contig13887:3329..33441681462741.0099766-UTR-Ecto-sp13_S_contig13887:3329..3344Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13887 3330..3344 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13887.3038.1prot_Ecto-sp13_S_contig13887.3038.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13887 2078..3329 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13887.3038.1

>prot_Ecto-sp13_S_contig13887.3038.1 ID=prot_Ecto-sp13_S_contig13887.3038.1|Name=mRNA_Ecto-sp13_S_contig13887.3038.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=99bp
MKPGDGIPADGLLFAGEGVKSNESGLTGEPDDLTKRAEADCFLYSSCMLT
EVSQSADCKMMVHSVGEHSQWGLIRATLVSEPQQTPMQEKLDNMAKLIG
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mRNA from alignment at Ecto-sp13_S_contig13887:2078..3344-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13887.3038.1 ID=mRNA_Ecto-sp13_S_contig13887.3038.1|Name=mRNA_Ecto-sp13_S_contig13887.3038.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13887:2078..3344- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGATGTTGTGGTTATGAAACCCGGGGACGGCATCCCCGCGGATGGCCT GCTCTTTGCCGGAGAGGGGGTTAAGAGCAATGAGTCGGGACTTACGGGAG AGCCCGACGACCTCACCAAGCGGGCGGAAGCCGACTGCTTCCTTTACAGC AGGTGGGCTGGCATTTTTGTTTTCGGGCTGTTTTTTCGCTTACATATTAC AGACTTGTCGGTGAAATCATATCACAGACCTGCCGGTGCAATTTGTGGAC ACACCAGGCGATGTCACACGGCAGGAAGGCCACACAGGAGTTTTGGTTTT CTCCGCCTTGGTCCTGCGGGTGGGTGCCTTTACTTGTATCGCTAGAAGGG GTGGTGCCAGCAGTACCATGTATCTGCCTATTTCATACGCAAATACACAT ATTTTTGTTTTTTCGCATCTGCGTTTGTCCGTTTGCCTCCGCAAACTATG AAGGGAAATATTATTTGTTTTTGTTTGTTAAGTACATCGCTGTGCACACT GCTGAAACAATGAGCAGTAAGCAGAGCTGGACAACGTGGAAGCATGAAGT CGATTTCTTGTTTTCGTCCGGCAAGTTGATGAGTTTCTGCGTCCTGACGG GAGGCGCCCTCCCATGCCGAGTCGACGACAAGCTCACGTCACCGCCTGCG AAGAAAAAACGTCTTGTGGTTGTACTTTGCCGCATGCTGACCTGTCATAT GCACAGGTATATTCAATCATTAGAACATACAGCCTTGGCTTTTTATCCCC AGCTGCATGCTGATCTAATTAGGTCCATCAAGAGCTGTCTGAGGTTTCTA GCATACCTCGCCGTTTGTGTTTAGCTGCGTGCCAAATGAAGTCCATGTAG GTCTCTCGGTGTTGGTCTCATCTCGCCGTTTCGTTATACGTCTTGAGTCT TTCGATGTTGTCTTATCTGGCCGTATTGTTCTGTTTGCGTGTCCATGTCA AGCCTTTCGATGTTGTCTTTTCTGGCCGTATCGTCATGTGTGCGTGTCTA CGTCGGAAGCTTTTCGATGTTGTCTTCTCATCTCGCCGTATCGTTACGTG TGCGTGTCGACGTCTTAACCCTTTCGATGTTGTCTTATCTCGCCACGTTG TTCTCAGCTGCATGCTGACCGAGGTCAGTCAGAGCGCCGACTGCAAGATG ATGGTGCACTCGGTTGGAGAGCATTCCCAGTGGGGCCTCATCAGGGCCAC CCTCGTGTCGGAGCCGCAACAGACGCCTATGCAGGAGAAGCTCGACAACA TGGCCAAACTCATCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13887:2078..3344-

>mRNA_Ecto-sp13_S_contig13887.3038.1 ID=mRNA_Ecto-sp13_S_contig13887.3038.1|Name=mRNA_Ecto-sp13_S_contig13887.3038.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13887:2078..3344- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAACCCGGGGACGGCATCCCCGCGGATGGCCTGCTCTTTGCCGGAGA
GGGGGTTAAGAGCAATGAGTCGGGACTTACGGGAGAGCCCGACGACCTCA
CCAAGCGGGCGGAAGCCGACTGCTTCCTTTACAGCAGCTGCATGCTGACC
GAGGTCAGTCAGAGCGCCGACTGCAAGATGATGGTGCACTCGGTTGGAGA
GCATTCCCAGTGGGGCCTCATCAGGGCCACCCTCGTGTCGGAGCCGCAAC
AGACGCCTATGCAGGAGAAGCTCGACAACATGGCCAAACTCATCGGG
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