mRNA_Ecto-sp13_S_contig13817.2988.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13817.2988.1
Unique NamemRNA_Ecto-sp13_S_contig13817.2988.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13817.2988.1 vs. uniprot
Match: D8LB68_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB68_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 2.750e-31
Identity = 66/78 (84.62%), Postives = 70/78 (89.74%), Query Frame = 1 
Query:    1 DANPPNVLAGDAASGSIRPRRASATRQVPEERQRSPPSLSVLPLRPHEVSGDASTDNGGSRGGDSRVGDDVPVSRERR 234
            DA PPNVLAG AASGSI PR+ASA  QVP ER RSPPSLS+LPLRPHEVSGDASTDNGGSRGGDS VGD++PVSRERR
Sbjct: 1096 DATPPNVLAGGAASGSIHPRQASAAGQVPAERPRSPPSLSLLPLRPHEVSGDASTDNGGSRGGDSSVGDNMPVSRERR 1173
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13817.2988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB68_ECTSI2.750e-3184.62Cyclic nucleotide-binding domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13817contigEcto-sp13_S_contig13817:777..1017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score127.9
Seed ortholog evalue2.2e-27
Seed eggNOG ortholog2880.D8LB68
Model size243
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.voltage-gated potassium channel activity
EggNOG OGsKOG0498@1,KOG0498@2759
Cds size240
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462737.1190937-CDS-Ecto-sp13_S_contig13817:776..10161681462737.1190937-CDS-Ecto-sp13_S_contig13817:776..1016Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13817 777..1016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13817.2988.1prot_Ecto-sp13_S_contig13817.2988.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13817 777..1016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13817.2988.1

>prot_Ecto-sp13_S_contig13817.2988.1 ID=prot_Ecto-sp13_S_contig13817.2988.1|Name=mRNA_Ecto-sp13_S_contig13817.2988.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=80bp
DANPPNVLAGDAASGSIRPRRASATRQVPEERQRSPPSLSVLPLRPHEVS
GDASTDNGGSRGGDSRVGDDVPVSRERRRM
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mRNA from alignment at Ecto-sp13_S_contig13817:777..1017+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13817.2988.1 ID=mRNA_Ecto-sp13_S_contig13817.2988.1|Name=mRNA_Ecto-sp13_S_contig13817.2988.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=241bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13817:777..1017+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGCGAACCCCCCCAACGTTCTTGCGGGGGACGCTGCCAGTGGGAGCAT
TCGCCCGAGACGGGCGAGTGCGACAAGACAAGTTCCAGAGGAACGTCAGC
GGTCACCGCCATCACTGAGTGTGCTGCCCTTAAGACCCCACGAAGTTAGC
GGCGACGCTTCCACCGATAACGGTGGGTCGCGAGGCGGGGATTCGAGAGT
TGGGGACGACGTACCGGTGTCGAGGGAGAGAAGGAGAATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13817:777..1017+

>mRNA_Ecto-sp13_S_contig13817.2988.1 ID=mRNA_Ecto-sp13_S_contig13817.2988.1|Name=mRNA_Ecto-sp13_S_contig13817.2988.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13817:777..1017+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGCGAACCCCCCCAACGTTCTTGCGGGGGACGCTGCCAGTGGGAGCAT
TCGCCCGAGACGGGCGAGTGCGACAAGACAAGTTCCAGAGGAACGTCAGC
GGTCACCGCCATCACTGAGTGTGCTGCCCTTAAGACCCCACGAAGTTAGC
GGCGACGCTTCCACCGATAACGGTGGGTCGCGAGGCGGGGATTCGAGAGT
TGGGGACGACGTACCGGTGTCGAGGGAGAGAAGGAGAATG
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