mRNA_Ecto-sp13_S_contig13787.2971.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13787.2971.1
Unique NamemRNA_Ecto-sp13_S_contig13787.2971.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13787.2971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13787contigEcto-sp13_S_contig13787:2703..3173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size156
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size153
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462735.9849432-CDS-Ecto-sp13_S_contig13787:2703..27791681462735.9849432-CDS-Ecto-sp13_S_contig13787:2703..2779Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13787 2704..2779 -
1681462735.9933333-CDS-Ecto-sp13_S_contig13787:3096..31731681462735.9933333-CDS-Ecto-sp13_S_contig13787:3096..3173Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13787 3097..3173 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13787.2971.1prot_Ecto-sp13_S_contig13787.2971.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13787 2704..3173 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13787.2971.1

>prot_Ecto-sp13_S_contig13787.2971.1 ID=prot_Ecto-sp13_S_contig13787.2971.1|Name=mRNA_Ecto-sp13_S_contig13787.2971.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
ERSRVWRSPPRSRKPSWRHGRRGEPSERPRQVSTAATHEAYRSRQLGAYG
P
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mRNA from alignment at Ecto-sp13_S_contig13787:2703..3173-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13787.2971.1 ID=mRNA_Ecto-sp13_S_contig13787.2971.1|Name=mRNA_Ecto-sp13_S_contig13787.2971.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=471bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13787:2703..3173- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCGATCACGGGTGTGGCGAAGTCCACCGCGTTCGAGGAAACCGTCCTG
GAGGCATGGGCGGCGGGGGGAACCAAGGTGTGCGAGTGGCATTGGATTTT
TACCCGCCTTTCGTGCTCGTTGAATAGACGCACCTATGCTAACAACTAGG
CCCCACGGACTGGGGGGTGCCAACCCGCGATGCGATTCCAGACTCCACCT
AGTCGCGCTTGGAAGACGTTTGAGGTATCGCCAAAGCTTAGAGTGAATGC
CCCGACGTTCGACCGATGCTGCCTGCAAGAGAACGGCGTCGAGCGCTGGG
TTGTTGATATGCTGTCTGGTGCACCATAAATTATGCGCCTGCGCCAATGT
GATTCGAACGCCTGATCCTTTGTTTCTTTTTGTGGCATTCAAAGCGAACG
CCCTCGCCAAGTCTCCACGGCGGCGACTCACGAGGCCTACCGGTCCAGGC
AGTTGGGGGCCTATGGACCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13787:2703..3173-

>mRNA_Ecto-sp13_S_contig13787.2971.1 ID=mRNA_Ecto-sp13_S_contig13787.2971.1|Name=mRNA_Ecto-sp13_S_contig13787.2971.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13787:2703..3173- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCGATCACGGGTGTGGCGAAGTCCACCGCGTTCGAGGAAACCGTCCTG
GAGGCATGGGCGGCGGGGGGAACCAAGCGAACGCCCTCGCCAAGTCTCCA
CGGCGGCGACTCACGAGGCCTACCGGTCCAGGCAGTTGGGGGCCTATGGA
CCA
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