mRNA_Ecto-sp13_S_contig13787.2970.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13787.2970.1
Unique NamemRNA_Ecto-sp13_S_contig13787.2970.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13787.2970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13787contigEcto-sp13_S_contig13787:2142..2732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size155
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size105
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462735.9447548-CDS-Ecto-sp13_S_contig13787:2141..22211681462735.9447548-CDS-Ecto-sp13_S_contig13787:2141..2221Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13787 2142..2221 +
1681462735.9532719-CDS-Ecto-sp13_S_contig13787:2657..26821681462735.9532719-CDS-Ecto-sp13_S_contig13787:2657..2682Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13787 2658..2682 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462735.961217-UTR-Ecto-sp13_S_contig13787:2682..27321681462735.961217-UTR-Ecto-sp13_S_contig13787:2682..2732Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13787 2683..2732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13787.2970.1prot_Ecto-sp13_S_contig13787.2970.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13787 2142..2682 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13787.2970.1

>prot_Ecto-sp13_S_contig13787.2970.1 ID=prot_Ecto-sp13_S_contig13787.2970.1|Name=mRNA_Ecto-sp13_S_contig13787.2970.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=35bp
LVASTLALRDEFLVPPLLPHLQAAVSCLLDWTRP*
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mRNA from alignment at Ecto-sp13_S_contig13787:2142..2732+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13787.2970.1 ID=mRNA_Ecto-sp13_S_contig13787.2970.1|Name=mRNA_Ecto-sp13_S_contig13787.2970.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=591bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13787:2142..2732+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGTAGCCTCCACGCTGGCCCTCCGTGACGAGTTCCTGGTGCCACCCCT
GTTGCCGCATCTGCAAGCTGCGGTCAGCTGGTGAGCGGACGGTCTATTGG
CGCCGCATTCCTGCTTCTCCGTTCCCCCGAACCTGTCGTGTTCGTGAGTT
TTCATTGCTCCAAGTCAGCCGCGCTGCAGCCATGCCCGTCTAAAGACAAG
TGGGTGATTCACTCAGATCAAGACGCACGCGCTATCTGCTACTGATTTCA
TGGAATCCCTTTTCGGTAAATATGTGTGGCTCTTCTTAAGCAGCTTTCCT
GAGACGGAAGCAGCACCATAAGTCTGACAATGTCGGGGACGGCATGGGTG
GATGCACGGGGCGACAGGGAAAGTAGGGTCGACATCCTAAGCTCGGGACA
TCCTTGAACCGGCGGTAGAAGTCCACGAGATGGTGGAACGCTTTGCCCTT
CGCACCTTGATATCTGCGTCGGCCTGATCATCCCCTTACCACTTACTGTA
CATGTCCGACGACCAGTTTGTTGGATTGGACACGGCCTTGATCGCCGCGC
GCACTTCGTCGGTGGTCCATAGGCCCCCAACTGCCTGGACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13787:2142..2732+

>mRNA_Ecto-sp13_S_contig13787.2970.1 ID=mRNA_Ecto-sp13_S_contig13787.2970.1|Name=mRNA_Ecto-sp13_S_contig13787.2970.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13787:2142..2732+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGTAGCCTCCACGCTGGCCCTCCGTGACGAGTTCCTGGTGCCACCCCT
GTTGCCGCATCTGCAAGCTGCGGTCAGCTGTTTGTTGGATTGGACACGGC
CTTGA
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