mRNA_Ecto-sp13_S_contig13734.2935.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13734.2935.1
Unique NamemRNA_Ecto-sp13_S_contig13734.2935.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13734.2935.1 vs. uniprot
Match: D7FKZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKZ4_ECTSI)

HSP 1 Score: 258 bits (658), Expect = 1.660e-82
Identity = 167/286 (58.39%), Postives = 186/286 (65.03%), Query Frame = 1 
Query:    1 TCPVTQVAALGMHDRSAAHQAAQWTCARLDAVRRMVDASTSMWKEDQAACQLKEAEARDRELDETQTPADSCAADFEDISSRSVDLVRTLQEDAANTAVHVGGLNPEAEDRDGSDNDSRKVGSALLEAVQRLALTAASTLEEEIFTCQGEKADAVDREGKTDENMRKLNGRPLRLYQLREHPISGLGVVLRRPHQRR-QCSSG---------HLFFR*GNHVPGGGV-CPAPKASDLEASNVFGVANRADRVEETQQEVLHRPCSRFEDM*EMAVAVVSNLYSCTG 825
            T PVT+VAALGM+DRSAAH+A+Q TCARLDAVRRMVD S S W+ DQ              LD+TQT  D+CAAD EDI SRSV+LVRTLQEDAA  AVHVGGL PE EDR GS+ D  +   A  E+ QRLALTA STLEEEIFTCQGEKADAVDRE KTDENMRKLN             +S         H+    C+ G           +F         GV  P   ASDLEASN+F VANRADRVEETQQ VL R  S+FEDM EM+ AVVSN+ SCTG
Sbjct:    2 TWPVTEVAALGMYDRSAAHEASQRTCARLDAVRRMVDESASRWEGDQ--------------LDKTQTDLDACAADIEDIHSRSVNLVRTLQEDAAKAAVHVGGLAPEVEDRIGSNYDMIR---ARFESAQRLALTATSTLEEEIFTCQGEKADAVDREVKTDENMRKLN-----------EDLSDCANYADGSHKAWVSCTEGLTSVDRVSLDTYFSVEEITLQVGVFVPRRAASDLEASNIFSVANRADRVEETQQGVLDRLRSQFEDMQEMSAAVVSNMCSCTG 259
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BLAST of mRNA_Ecto-sp13_S_contig13734.2935.1 vs. uniprot
Match: D7FRE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE6_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 3.670e-62
Identity = 130/198 (65.66%), Postives = 140/198 (70.71%), Query Frame = 1 
Query:    1 TCPVTQVAALGMHDRSAAHQAAQWTCARLDAVRRMVDASTSMWKEDQAACQLKEAEARDRE---------------------------LDETQTPADSCAADFEDISSRSVDLVRTLQEDAANTAVHVGGLN---PEAEDRDGSDNDSRKVGSALLEAVQRLALTAASTLEEEIFTCQGEKADAVDREGKTDENMRKL 504
            TCPVT VAALGMHDRSAAH+AAQWTCARLDAV+RMVDAS S W++DQA C LKEA ARDRE                           LD+TQT ADSCAADFEDISSRSVDLVRTLQED   TAV VGGL    PEAED DGSD D  +   A LEAVQRL LTA STLE EIFTCQGEKADA DRE + +E  ++L
Sbjct:  339 TCPVTHVAALGMHDRSAAHEAAQWTCARLDAVQRMVDASASRWEQDQATCLLKEAGARDREVELNRLLDAGEEIRKDLEDDLALSEEELDDTQTAADSCAADFEDISSRSVDLVRTLQEDVEKTAVRVGGLASAAPEAEDLDGSDYDMIR---ARLEAVQRLVLTATSTLEAEIFTCQGEKADAGDREAEIEEQRQEL 533
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BLAST of mRNA_Ecto-sp13_S_contig13734.2935.1 vs. uniprot
Match: D7G3D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D5_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 2.020e-58
Identity = 126/198 (63.64%), Postives = 139/198 (70.20%), Query Frame = 1 
Query:    1 TCPVTQVAALGMHDRSAAHQAAQWTCARLDAVRRMVDASTSMWKEDQAACQLKEAEARDRE---------------------------LDETQTPADSCAADFEDISSRSVDLVRTLQEDAANTAVHVGGLN---PEAEDRDGSDNDSRKVGSALLEAVQRLALTAASTLEEEIFTCQGEKADAVDREGKTDENMRKL 504
            TCPVT+VAALGMHDRSAAH+AAQWTCARL AV+RMVDASTS W++D+A  QL+EAE RDRE                           LDETQT  D+CAAD EDISSRSVDLVRTLQED A TAV VGGL    PEAED DGSD D  +     LEAVQRL LTA STLE EIFTCQGEKADA DRE + +E  ++L
Sbjct:  355 TCPVTEVAALGMHDRSAAHEAAQWTCARLHAVQRMVDASTSRWEDDKATYQLQEAEGRDREVELNRLLDAGEKMRKDLEDDLALSEEELDETQTELDACAADIEDISSRSVDLVRTLQEDVAKTAVRVGGLASAAPEAEDLDGSDYDMIRTR---LEAVQRLVLTATSTLEAEIFTCQGEKADAGDREAEIEEQRQEL 549
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BLAST of mRNA_Ecto-sp13_S_contig13734.2935.1 vs. uniprot
Match: A0A6H5JBW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW0_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.260e-15
Identity = 42/51 (82.35%), Postives = 45/51 (88.24%), Query Frame = 2 
Query:  512 DLSDCTNYESIRSAAWVSYSDGLTSVDSVPLDTYFSVEEITFQVGVFVPRR 664
            DLSDC NY SI+ AAWVS ++GLTSVD V LDTYFSVEEITFQVGVFVPRR
Sbjct:  373 DLSDCANYVSIQQAAWVSCTEGLTSVDRVSLDTYFSVEEITFQVGVFVPRR 423
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BLAST of mRNA_Ecto-sp13_S_contig13734.2935.1 vs. uniprot
Match: A0A6H5KKP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKP7_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 4.090e-15
Identity = 41/57 (71.93%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:  655 PAPKASDLEASNVFGVANRADRVEETQQEVLHRPCSRFEDM*EMAVAVVSNLYSCTG 825
            P   ASDLEASN+F +ANRADRVEETQQE+L R  SRFEDM EM  AVVSNL +C G
Sbjct:   93 PRRAASDLEASNIFSIANRADRVEETQQEILDRLRSRFEDMQEMTAAVVSNLRNCVG 149
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BLAST of mRNA_Ecto-sp13_S_contig13734.2935.1 vs. uniprot
Match: D7FRD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRD3_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 9.880e-11
Identity = 43/76 (56.58%), Postives = 48/76 (63.16%), Query Frame = 2 
Query:  554 AWVSYSDGLTSVDSVPLDTYFSVEEITFQVGVFVPR---------RRLLTWRRQMSSALQTAPTGWRRRSKRSSID 754
            AW+S  + LTSVD V LD  F VEEI+F+VGVF P          +RLL        ALQT PTGWRRRSKRSSID
Sbjct:   11 AWMSCLECLTSVDRVSLDIDFFVEEISFRVGVFCPAPSGFRPGGVKRLL--------ALQTTPTGWRRRSKRSSID 78
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BLAST of mRNA_Ecto-sp13_S_contig13734.2935.1 vs. uniprot
Match: D7G4D4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D4_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 2.530e-6
Identity = 45/119 (37.82%), Postives = 64/119 (53.78%), Query Frame = 1 
Query:  184 LDETQTPADSCAADFEDISSRSVDLVRTLQEDAANTAVHVGGLNPEAEDR-----DGSDNDSRKVGSA-------LLEAVQRLALTAASTLEEEIFTCQGEKADAVDREGKTDENMRKL 504
            ++E +  A+S  AD ED+ SR++ +   L +D A  A  V  L   AE          DND R    A        LEAVQRL LT  STL EE+  C+ +KA+AV+RE +T + M+++
Sbjct:  440 VNEARAIAESYGADIEDLDSRALAVALALADDVAEKASTVESLAHVAEGAVLGATPPFDNDDRWGSHAGYPMIRSHLEAVQRLVLTTTSTLVEEVSCCEHDKAEAVNREARTQQRMKEV 558
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BLAST of mRNA_Ecto-sp13_S_contig13734.2935.1 vs. uniprot
Match: D7G5N0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5N0_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 2.790e-6
Identity = 45/119 (37.82%), Postives = 64/119 (53.78%), Query Frame = 1 
Query:  184 LDETQTPADSCAADFEDISSRSVDLVRTLQEDAANTAVHVGGLNPEAEDR-----DGSDNDSRKVGSA-------LLEAVQRLALTAASTLEEEIFTCQGEKADAVDREGKTDENMRKL 504
            ++E +  A+S  AD ED+ SR++ +   L +D A  A  V  L   AE          DND R    A        LEAVQRL LT  STL EE+  C+ +KA+AV+RE +T + M+++
Sbjct:  218 VNEARAIAESYGADIEDLDSRALAVALALADDIAEKASTVESLAHVAEGAVLGATPPFDNDDRWGSHAGYPMIRSHLEAVQRLVLTTTSTLVEEVSCCEHDKAEAVNREARTQQRMKEV 336
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13734.2935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FKZ4_ECTSI1.660e-8258.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRE6_ECTSI3.670e-6265.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3D5_ECTSI2.020e-5863.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBW0_9PHAE2.260e-1582.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKP7_9PHAE4.090e-1571.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRD3_ECTSI9.880e-1156.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4D4_ECTSI2.530e-637.82Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G5N0_ECTSI2.790e-637.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13734contigEcto-sp13_S_contig13734:293..2733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size825
Hectar predicted targeting categoryother localisation
Exons6
Cds size591
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13734.2935.1prot_Ecto-sp13_S_contig13734.2935.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13734 818..2700 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462733.0033965-UTR-Ecto-sp13_S_contig13734:292..3591681462733.0033965-UTR-Ecto-sp13_S_contig13734:292..359Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13734 293..359 -
1681462733.0161955-UTR-Ecto-sp13_S_contig13734:683..8171681462733.0161955-UTR-Ecto-sp13_S_contig13734:683..817Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13734 684..817 -
1681462733.0831518-UTR-Ecto-sp13_S_contig13734:2700..27331681462733.0831518-UTR-Ecto-sp13_S_contig13734:2700..2733Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13734 2701..2733 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462733.029268-CDS-Ecto-sp13_S_contig13734:817..8891681462733.029268-CDS-Ecto-sp13_S_contig13734:817..889Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13734 818..889 -
1681462733.0435958-CDS-Ecto-sp13_S_contig13734:1351..15351681462733.0435958-CDS-Ecto-sp13_S_contig13734:1351..1535Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13734 1352..1535 -
1681462733.053117-CDS-Ecto-sp13_S_contig13734:1622..18071681462733.053117-CDS-Ecto-sp13_S_contig13734:1622..1807Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13734 1623..1807 -
1681462733.0626535-CDS-Ecto-sp13_S_contig13734:2065..21711681462733.0626535-CDS-Ecto-sp13_S_contig13734:2065..2171Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13734 2066..2171 -
1681462733.0729-CDS-Ecto-sp13_S_contig13734:2656..27001681462733.0729-CDS-Ecto-sp13_S_contig13734:2656..2700Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13734 2657..2700 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13734.2935.1

>prot_Ecto-sp13_S_contig13734.2935.1 ID=prot_Ecto-sp13_S_contig13734.2935.1|Name=mRNA_Ecto-sp13_S_contig13734.2935.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=197bp
MHDRSAAHQAAQWTCARLDAVRRMVDASTSMWKEDQAACQLKEAEARDRE
LDETQTPADSCAADFEDISSRSVDLVRTLQEDAANTAVHVGGLNPEAEDR
DGSDNDSRKVGSALLEAVQRLALTAASTLEEEIFTCQGEKADAVDREGKT
DENMRKLNGRPLRLYQLREHPISGLGVVLRRPHQRRQCSSGHLFFR*
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mRNA from alignment at Ecto-sp13_S_contig13734:293..2733-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13734.2935.1 ID=mRNA_Ecto-sp13_S_contig13734.2935.1|Name=mRNA_Ecto-sp13_S_contig13734.2935.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13734:293..2733- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCTGCCCGGTTACGCAGGTGGCGGCGCTTGGCATGCACGACCGGTCTGC
GGCGCACCAGGCGGCGCAATGGACATGGTAAGCTAATTCTCCAGCGTGCT
CGTGCTTCGATGAGTTGCTGCTGCTGCGTGGTTCCGGTGTACTGTTATGT
GTTGGCGGCTGGTTGTGCTGTTGTCTTTGTCGCTCGTTCGGTTGATATGG
ATGCTGGTGGTGGTGGTGATCAGTCGACCCCGTTGTTGCACCAGTGATGT
TGTTGTGTTGTTTTTGTTGTTGAGGACAAAGCTATCGTGATAGCGTGGTA
GTCGATGGGTTTGTGTCTCAAGTTTCGGCAGAGCTCTTACTGAATCCTCT
GTGAGGTTTCCGTCCCCGACCTCTGTGATTCATTCCCATCTAATAGCCAC
CGTAGGATCAAAACCATCGAGATTAATGCCCAAGCCCACTCGACATTCGT
GTTGTTATGCCTGTTTCGTCTCAGAGTGATGTCTCGATCGAAAATCCATT
TGGTAACAGCAGCGTATGCCCTCTCCCCTCCCTCTTTCCCCCATGCTTCG
GATCTGGTGCAGCGCCCGCCTGGATGCCGTGCGACGCATGGTGGATGCAT
CTACATCGATGTGGAAGGAAGACCAGGCGGCGTGCCAGCTGAAAGAGGCA
GAAGCCAGGGACCGAGAAGTCGAGCTGAACCGCCTCCTGGACGCGGGTGA
GGAGATGCGGAAGTACCTCGAGGACGACCTTGCCTTGTCCGAGGAGGAGG
TGAGCACTCAATAAAGGACTGGGGGATGACCGCGATACACTCTCTGGCGG
CACTGCTACCGTCTATGTCGCATCCTACCTCATGAAGAACGATCGACACG
GCAACTCTTGTGACGCCCATCCTCCTTCCTCCGCTATGTCTCCGCTGCCG
GTGTGGCACTCGATGCGCATTCTAAGTTGGACGAGACTCAGACGCCAGCT
GACTCGTGCGCCGCGGACTTCGAGGACATCTCCTCCCGTTCGGTGGACCT
TGTTCGTACCCTCCAGGAGGATGCGGCAAACACGGCGGTGCACGTGGGAG
GTCTCAACCCTGAAGCGGAAGACCGTGACGGATCGGACAACGACTCGAGG
AAGGTAGGCAGGTCGAGGAGATGCCACTTGAGAGGAAAGTGTTCATGACT
CCCCCCCCTCCGCACACGCCTTAGCTGCTTCGATACCGTACCTTTCAGCG
CCCTCTTGGAGGCCGTGCAGCGGCTGGCCTTGACGGCCGCGTCGACGCTG
GAGGAGGAAATCTTCACGTGCCAGGGCGAGAAGGCAGACGCCGTCGACCG
CGAGGGCAAGACAGACGAGAACATGCGGAAGCTCAACGGAAGACCTCTCC
GACTGTACCAACTACGAGAGCATCCGATCAGCGTGACCGAGCGTGAGATC
AAGCACCGATTGTCGCTCTGTTGGTGGTATCCGTTTTCTCGATTCTGCAC
AAGTAAACACCACTAGTTGCGTACCCAGGGCGAGGGGATCTGATCAATCC
CATGCCCTTAGCATTTGATATTGTAGCACTTTTCATTGTTGAACATTCTT
GAAACGTTCACGACACCGTCGCCGGGAGATGCCCAATGGTTGGTTGGTTT
TCATGATGGGGGGCGGGAGAAAGTGATGCTCGACGTCACCGGCGGGATCG
AGGGGCTAAGGGTGGTGGATGATGCATTGGGAAGGGGGGCTAAGCGGTTG
TCGAACTGTCGGTAGCACACGGTGGATAGCCGATCCCCCGGTAGCCAGCG
ACAGAGCCGCTCTGTAATCTCAGTCCCTCACCGCTGCCACTCGATTGTTT
CGTTGGTATGGCTCTCACAAATCGTAGGCGGATGGTTCCCACAGGGCTTG
GGTGTCGTACTCCGACGGCCTCACCAGCGTCGACAGTGTTCCTCTGGACA
CCTATTTTTCCGTTGAGGAAATCACGTTCCAGGTGGGGGTGTTTGTCCCG
CGCCGAAGGCTTCTGACCTGGAGGCGTCAAATGTCTTCGGCGTTGCAAAC
CGCGCCGACCGGGTGGAGGAGACGCAGCAAGAGGTCCTCCATAGACCGTG
GTAAGCGTTTGTGCATGGTCGATTGCAAGGGGAGAGTTCATGACAGATGG
TGCCATGGGTTCTTGTGTTGGGTAGAGGTTGCTGTGTCTGTCTGTCTGTG
TGTCGATCTGATGTTGGTGATTAGTCCTGCCATCCCTGTGTGCGGTGCAC
GATGATGTCGTCGTCGTCGTCATGGTTGCTGCTTATTGTTGTCGCTATTG
GTCGGCCGCTACCGATGATGTTCAGCAACTGCTTCGGCTTGGGCTTTGGT
TTAAGCACCTACTCCGCTCCTCCTTCCCGCATCCCCTCCCAACGCCCCCT
GATGCACCCATGCGCTTGTTTCAGCTCACGGTTCGAAGACATGTAGGAAA
TGGCCGTTGCCGTGGTGTCCAACCTGTACAGCTGTACGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13734:293..2733-

>mRNA_Ecto-sp13_S_contig13734.2935.1 ID=mRNA_Ecto-sp13_S_contig13734.2935.1|Name=mRNA_Ecto-sp13_S_contig13734.2935.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=591bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13734:293..2733- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACGACCGGTCTGCGGCGCACCAGGCGGCGCAATGGACATGCGCCCG
CCTGGATGCCGTGCGACGCATGGTGGATGCATCTACATCGATGTGGAAGG
AAGACCAGGCGGCGTGCCAGCTGAAAGAGGCAGAAGCCAGGGACCGAGAA
TTGGACGAGACTCAGACGCCAGCTGACTCGTGCGCCGCGGACTTCGAGGA
CATCTCCTCCCGTTCGGTGGACCTTGTTCGTACCCTCCAGGAGGATGCGG
CAAACACGGCGGTGCACGTGGGAGGTCTCAACCCTGAAGCGGAAGACCGT
GACGGATCGGACAACGACTCGAGGAAGGTAGGCAGCGCCCTCTTGGAGGC
CGTGCAGCGGCTGGCCTTGACGGCCGCGTCGACGCTGGAGGAGGAAATCT
TCACGTGCCAGGGCGAGAAGGCAGACGCCGTCGACCGCGAGGGCAAGACA
GACGAGAACATGCGGAAGCTCAACGGAAGACCTCTCCGACTGTACCAACT
ACGAGAGCATCCGATCAGCGGCTTGGGTGTCGTACTCCGACGGCCTCACC
AGCGTCGACAGTGTTCCTCTGGACACCTATTTTTCCGTTGA
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