mRNA_Ecto-sp13_S_contig13675.2897.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13675.2897.1
Unique NamemRNA_Ecto-sp13_S_contig13675.2897.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13675.2897.1 vs. uniprot
Match: A0A6H5LA95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA95_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 1.210e-71
Identity = 176/226 (77.88%), Postives = 181/226 (80.09%), Query Frame = 2 
Query:  350 CKPPVLSPETAAANSRVSDLATDMLERGWVTREEYQQLLHGDRLYSLHESEMEXXXXXXXXXXLRNKIGLRRKLWKQTQIGVVRRARARKKAEK-------------------------RNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--AERPPDVCRDPITLDDLGSWTWDFRASEAATPPVSCGATKSTKHGGGGGWKGKRFGVGVK 946
            CKPPVLSP+TAAANSRVS LATDMLERGWVTR+EYQQLLHGDRL+SLH+SEME   XXXXX  LRNKIGLRRKLWKQT+IGVVRRARARK AEK                         RN   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         AERPPDVCRDPITLDDLGSWTWDFRASEAATPPVSCGATKSTKHGGGGGWKGKRFGVG K
Sbjct:   20 CKPPVLSPDTAAANSRVSALATDMLERGWVTRDEYQQLLHGDRLFSLHKSEMEEQEXXXXXR-LRNKIGLRRKLWKQTRIGVVRRARARK-AEKVWVKSTQRAPPLPSPHTPPNVQCAHRNKAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSKKRKQPLAERPPDVCRDPITLDDLGSWTWDFRASEAATPPVSCGATKSTKHGGGGGWKGKRFGVGGK 243
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BLAST of mRNA_Ecto-sp13_S_contig13675.2897.1 vs. uniprot
Match: D7FNR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNR0_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 4.210e-61
Identity = 169/176 (96.02%), Postives = 170/176 (96.59%), Query Frame = 2 
Query:  419 MLERGWVTREEYQQLLHGDRLYSLHESEMEXXXXXXXXXXLRNKIGLRRKLWKQTQIGVVRRARARKKAEKRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--AERPPDVCRDPITLDDLGSWTWDFRASEAATPPVSCGATKSTKHGGGGGWKGKRFGVG 940
            MLERGWVTREEYQQLLHGDRLYSLHESEME XXXXXXXX LRNKIGLRRKLW+QTQIGVVRRARARKKAEK  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  AERPPDVCRDPITLDDLGSWTWDFRASEAATPPVSCGATKSTKHGGGGGWKGKRFGVG
Sbjct:    1 MLERGWVTREEYQQLLHGDRLYSLHESEMEEXXXXXXXX-LRNKIGLRRKLWRQTQIGVVRRARARKKAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAERPPDVCRDPITLDDLGSWTWDFRASEAATPPVSCGATKSTKHGGGGGWKGKRFGVG 175
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13675.2897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LA95_9PHAE1.210e-7177.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNR0_ECTSI4.210e-6196.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13675contigEcto-sp13_S_contig13675:1665..3287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score213.4
Seed ortholog evalue9e-53
Seed eggNOG ortholog2880.D7FNR0
Model size973
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs293KV@1,2RAHN@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_004580.1
Cds size555
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462730.1475885-CDS-Ecto-sp13_S_contig13675:1664..20061681462730.1475885-CDS-Ecto-sp13_S_contig13675:1664..2006Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13675 1665..2006 -
1681462730.1610935-CDS-Ecto-sp13_S_contig13675:2327..24811681462730.1610935-CDS-Ecto-sp13_S_contig13675:2327..2481Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13675 2328..2481 -
1681462730.1743364-CDS-Ecto-sp13_S_contig13675:2810..28691681462730.1743364-CDS-Ecto-sp13_S_contig13675:2810..2869Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13675 2811..2869 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462730.183911-UTR-Ecto-sp13_S_contig13675:2869..32871681462730.183911-UTR-Ecto-sp13_S_contig13675:2869..3287Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13675 2870..3287 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13675.2897.1prot_Ecto-sp13_S_contig13675.2897.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13675 1665..2869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13675.2897.1

>prot_Ecto-sp13_S_contig13675.2897.1 ID=prot_Ecto-sp13_S_contig13675.2897.1|Name=mRNA_Ecto-sp13_S_contig13675.2897.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=185bp
MLERGWVTREEYQQLLHGDRLYSLHESEMEEQERQRRRRRLRNKIGLRRK
LWKQTQIGVVRRARARKKAEKRNKAGAAAAAAAADDLSKSGKVLTASSAA
AAAAAVDKRKKKKQPPAERPPDVCRDPITLDDLGSWTWDFRASEAATPPV
SCGATKSTKHGGGGGWKGKRFGVGVKGGRGCGVSG
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mRNA from alignment at Ecto-sp13_S_contig13675:1665..3287-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13675.2897.1 ID=mRNA_Ecto-sp13_S_contig13675.2897.1|Name=mRNA_Ecto-sp13_S_contig13675.2897.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1623bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13675:1665..3287- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCGGGTATTGGGTACATGACAACATGCGCTTCACGAAAAGAGGCGAGC
GAAGAGATAGCCTCGCCGCCGAGGCAAAGCAAATACCAGCCAAGGTTGGG
GCGAACATGGGACTTTGGCGGCTAGAGTGCAACAGCACCTACCTTCATCT
CACGGAACCCAACCGACCGACGCGATCAGTGAAGCTAAACTGCTGCTACA
TAGACGGCGAAAATGAACACGTGCAGAGCAGGTTTACCCAGCGCGTTGTT
TACAAACTCTTTTTTAATCAAAACGCGAAAGAAAGGATCCCCTTTGCAAG
CCATTGACAATTGCGCCGGTGGCCGATCAATGTTTTTTTTGTGTGCAGGT
GCAAGCCTCCAGTGCTGTCCCCAGAAACCGCGGCCGCGAACTCGAGGGTG
TCCGACTTGGCGACCGACATGCTGGAGAGGGGCTGGGTCACGCGAGAAGA
GTACCAGCAGCTCCTGCATGGCGATCGGTGAGAGGAGGGAGAGAGGGAAC
CGCACACCCCACCTTCTCTCTATTGTTGTTGTTGTTGTTGGTGGTGGTGG
TGGCGATTGGCCACAGTAAGGACCGTTTCAGCGACAGCAGTAACATTCGG
GTAGTTGACACGAAAGTCTTGACTGCGGTGCACAGCCACTTGTGACTGAG
GTTGAGTGTATCATCAACAACTGCTGTCCTTGGGTGGATGGCTCGCCACG
TTGGTGTACGTACAACAAATTTGGTATTACGTCGCTCCAAACACTTCTTG
CTGCTGCTGCTGCTACTGCTGCTGCTGCTGCTGCTGGCACTACCACGGTA
CTTTAGGTTGTACTCTCTCCACGAGTCCGAGATGGAGGAGCAAGAACGAC
AGCGGCGGCGGCGGCGACTGCGAAATAAGATCGGGCTCCGTCGGAAATTG
TGGAAGCAGACGCAGATCGGAGTCGTCAGGCGCGCGCGCGCGCGGAAGAA
GGCCGAAAAGGTATATACTCCTAATGTACTGTATCTACGGACGTCTTGCT
GCTTCGGTTCGCGTGATGGTATGTTTTTAGTGTTGTGTCGTGGACAATTT
TATTTCTGTCCGGCTGTGTATGTCACCGTCTGGTGTTGTTGCCGTTGGTC
TTGTGTAGCGGCAACAGGCAATCCCCGCGGAGGGGGGGGTGACCTACCGG
CAAGGCGGGGTTACGAGAAATCCCCGCTTTCGCAGTGCTGCCTATGACGT
TCGTCAAGTACGGGTCAAATCAACCCGGCGTGCGCCCCCCCCCCGTCACC
CCATCCCCCTCCGAATGTACAACGCGCGCAGCGCAATAAGGCGGGCGCGG
CAGCGGCGGCGGCGGCGGCGGATGACCTCAGCAAGTCAGGCAAGGTGTTG
ACAGCGAGTTCGGCGGCGGCGGCGGCAGCGGCCGTGGACAAGAGGAAGAA
GAAGAAGCAGCCGCCGGCGGAGCGGCCCCCCGACGTCTGCCGAGACCCCA
TCACGCTCGACGACCTCGGCTCATGGACGTGGGACTTCCGCGCCAGCGAG
GCCGCCACACCGCCCGTTTCGTGCGGGGCAACTAAGTCGACGAAGCACGG
AGGCGGCGGCGGTTGGAAGGGGAAGCGTTTCGGGGTGGGGGTCAAGGGGG
GCCGTGGGTGTGGCGTCAGCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13675:1665..3287-

>mRNA_Ecto-sp13_S_contig13675.2897.1 ID=mRNA_Ecto-sp13_S_contig13675.2897.1|Name=mRNA_Ecto-sp13_S_contig13675.2897.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13675:1665..3287- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGAGAGGGGCTGGGTCACGCGAGAAGAGTACCAGCAGCTCCTGCA
TGGCGATCGGTTGTACTCTCTCCACGAGTCCGAGATGGAGGAGCAAGAAC
GACAGCGGCGGCGGCGGCGACTGCGAAATAAGATCGGGCTCCGTCGGAAA
TTGTGGAAGCAGACGCAGATCGGAGTCGTCAGGCGCGCGCGCGCGCGGAA
GAAGGCCGAAAAGCGCAATAAGGCGGGCGCGGCAGCGGCGGCGGCGGCGG
CGGATGACCTCAGCAAGTCAGGCAAGGTGTTGACAGCGAGTTCGGCGGCG
GCGGCGGCAGCGGCCGTGGACAAGAGGAAGAAGAAGAAGCAGCCGCCGGC
GGAGCGGCCCCCCGACGTCTGCCGAGACCCCATCACGCTCGACGACCTCG
GCTCATGGACGTGGGACTTCCGCGCCAGCGAGGCCGCCACACCGCCCGTT
TCGTGCGGGGCAACTAAGTCGACGAAGCACGGAGGCGGCGGCGGTTGGAA
GGGGAAGCGTTTCGGGGTGGGGGTCAAGGGGGGCCGTGGGTGTGGCGTCA
GCGGG
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