mRNA_Ecto-sp13_S_contig13672.2895.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13672.2895.1
Unique NamemRNA_Ecto-sp13_S_contig13672.2895.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13672.2895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13672contigEcto-sp13_S_contig13672:4067..4437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size371
Hectar predicted targeting categoryother localisation
Exons1
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462730.0280566-CDS-Ecto-sp13_S_contig13672:4066..44201681462730.0280566-CDS-Ecto-sp13_S_contig13672:4066..4420Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13672 4067..4420 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462730.0407948-UTR-Ecto-sp13_S_contig13672:4420..44371681462730.0407948-UTR-Ecto-sp13_S_contig13672:4420..4437Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13672 4421..4437 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13672.2895.1prot_Ecto-sp13_S_contig13672.2895.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13672 4067..4420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13672.2895.1

>prot_Ecto-sp13_S_contig13672.2895.1 ID=prot_Ecto-sp13_S_contig13672.2895.1|Name=mRNA_Ecto-sp13_S_contig13672.2895.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=118bp
MLVIYIGEREQQKGSFATETGPVCVCIIIICIDRATRLTDSACVSSLPLP
SLGFRSLRVVLVLSPLLLLLWPPCLNHLSVPDPLPPKPDPVITCPHSLNS
CVSIGRAGVYSGVVSRL*
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mRNA from alignment at Ecto-sp13_S_contig13672:4067..4437+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13672.2895.1 ID=mRNA_Ecto-sp13_S_contig13672.2895.1|Name=mRNA_Ecto-sp13_S_contig13672.2895.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=371bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13672:4067..4437+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGTTATCTACATTGGTGAGAGAGAGCAGCAGAAGGGATCGTTTGC
TACGGAGACTGGACCCGTGTGTGTGTGCATTATTATTATTTGCATCGACC
GCGCTACCCGGCTGACCGATTCTGCGTGTGTTTCTTCTCTTCCCTTGCCA
TCCTTGGGATTCCGTAGTCTTCGTGTGGTACTCGTGTTGTCGCCGCTGTT
GTTGCTACTGTGGCCTCCATGCCTGAACCACCTCTCTGTGCCAGACCCAC
TACCGCCTAAGCCTGACCCAGTCATCACGTGCCCACACAGTTTGAATAGT
TGTGTCTCTATAGGGCGTGCCGGTGTGTACAGCGGTGTGGTGTCCAGACT
GTGATGCATCTTGTTTGCCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13672:4067..4437+

>mRNA_Ecto-sp13_S_contig13672.2895.1 ID=mRNA_Ecto-sp13_S_contig13672.2895.1|Name=mRNA_Ecto-sp13_S_contig13672.2895.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13672:4067..4437+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGTTATCTACATTGGTGAGAGAGAGCAGCAGAAGGGATCGTTTGC
TACGGAGACTGGACCCGTGTGTGTGTGCATTATTATTATTTGCATCGACC
GCGCTACCCGGCTGACCGATTCTGCGTGTGTTTCTTCTCTTCCCTTGCCA
TCCTTGGGATTCCGTAGTCTTCGTGTGGTACTCGTGTTGTCGCCGCTGTT
GTTGCTACTGTGGCCTCCATGCCTGAACCACCTCTCTGTGCCAGACCCAC
TACCGCCTAAGCCTGACCCAGTCATCACGTGCCCACACAGTTTGAATAGT
TGTGTCTCTATAGGGCGTGCCGGTGTGTACAGCGGTGTGGTGTCCAGACT
GTGA
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