mRNA_Ecto-sp13_S_contig13666.2890.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13666.2890.1
Unique NamemRNA_Ecto-sp13_S_contig13666.2890.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13666.2890.1 vs. uniprot
Match: D8LU88_ECTSI (Ubiquitin domain-containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU88_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 6.480e-27
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 HQGTADHGHYYSLIRAGGDRWLEFNDRRVTPYDPANIPRDCFGGALT 141
            HQGTADHGHYYSLIRAGGDRWLEFNDRRVTPYDPANIPRDCFGGALT
Sbjct: 3135 HQGTADHGHYYSLIRAGGDRWLEFNDRRVTPYDPANIPRDCFGGALT 3181
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BLAST of mRNA_Ecto-sp13_S_contig13666.2890.1 vs. uniprot
Match: A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 4.190e-26
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 HQGTADHGHYYSLIRAGGDRWLEFNDRRVTPYDPANIPRDCFGGALT 141
            HQGTADHGHYYSLIRA GDRWLEFNDRRVTPYDPANIPRDCFGGALT
Sbjct: 2158 HQGTADHGHYYSLIRASGDRWLEFNDRRVTPYDPANIPRDCFGGALT 2204
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BLAST of mRNA_Ecto-sp13_S_contig13666.2890.1 vs. uniprot
Match: A0A835YPA6_9STRA (USP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPA6_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 5.450e-15
Identity = 29/44 (65.91%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 HQGTADHGHYYSLIRAGGDRWLEFNDRRVTPYDPANIPRDCFGG 132
            H GTAD GHYYS IR     WLEFNDR VTP++ A IP++CFGG
Sbjct:   10 HVGTADSGHYYSFIRVANGSWLEFNDRVVTPFNEALIPKECFGG 53
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BLAST of mRNA_Ecto-sp13_S_contig13666.2890.1 vs. uniprot
Match: A0A7S3YZF3_9EUKA (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YZF3_9EUKA)

HSP 1 Score: 70.1 bits (170), Expect = 7.710e-13
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 HQGTADHGHYYSLIRAGGD-RWLEFNDRRVTPYDPANIPRDCFGGA 135
            H G A  GHYYS IR G D +W EFND+++TP+DP+ IP +CFGG+
Sbjct:  397 HTGMASSGHYYSFIRVGSDNKWAEFNDKKITPFDPSRIPAECFGGS 442
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BLAST of mRNA_Ecto-sp13_S_contig13666.2890.1 vs. uniprot
Match: A0A1X6PBX1_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PBX1_PORUM)

HSP 1 Score: 66.6 bits (161), Expect = 1.280e-11
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 HQGTADHGHYYSLIRAGG-DRWLEFNDRRVTPYDPANIPRDCFGG 132
            H GTAD GHYYS ++  G DRW+ FND    P+DPA+IPR C+GG
Sbjct: 2707 HAGTADSGHYYSFVQERGTDRWIHFNDTITEPFDPADIPRTCYGG 2751
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BLAST of mRNA_Ecto-sp13_S_contig13666.2890.1 vs. uniprot
Match: F0ZN32_DICPU (USP domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZN32_DICPU)

HSP 1 Score: 65.5 bits (158), Expect = 3.280e-11
Identity = 28/44 (63.64%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 HQGTADHGHYYSLIRAGGDRWLEFNDRRVTPYDPANIPRDCFGG 132
            HQGTAD GHY SLI+     W E ND  V PYDP  IP DCFGG
Sbjct: 2361 HQGTADSGHYISLIKDTNGSWFELNDTLVLPYDPNRIPIDCFGG 2404
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BLAST of mRNA_Ecto-sp13_S_contig13666.2890.1 vs. uniprot
Match: A0A267H646_9PLAT (USP domain-containing protein n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267H646_9PLAT)

HSP 1 Score: 64.7 bits (156), Expect = 6.120e-11
Identity = 29/54 (53.70%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    1 HQGTADHGHYYSLIR-------AGGDRWLEFNDRRVTPYDPANIPRDCFGGALT 141
            H GTAD GHYYS IR          DRWL FND  V P+DP+ IP +CFGG ++
Sbjct: 2489 HTGTADGGHYYSYIRDRLSPSVGDADRWLWFNDSEVRPFDPSQIPVECFGGEVS 2542
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BLAST of mRNA_Ecto-sp13_S_contig13666.2890.1 vs. uniprot
Match: A0A267DYC9_9PLAT (USP domain-containing protein (Fragment) n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267DYC9_9PLAT)

HSP 1 Score: 64.7 bits (156), Expect = 6.120e-11
Identity = 29/54 (53.70%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    1 HQGTADHGHYYSLIR-------AGGDRWLEFNDRRVTPYDPANIPRDCFGGALT 141
            H GTAD GHYYS IR          DRWL FND  V P+DP+ IP +CFGG ++
Sbjct: 1649 HTGTADGGHYYSYIRDRLSPSVGDADRWLWFNDSEVRPFDPSQIPVECFGGEVS 1702
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BLAST of mRNA_Ecto-sp13_S_contig13666.2890.1 vs. uniprot
Match: A0A1I8I193_9PLAT (USP domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8I193_9PLAT)

HSP 1 Score: 64.7 bits (156), Expect = 6.120e-11
Identity = 29/54 (53.70%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    1 HQGTADHGHYYSLIR-------AGGDRWLEFNDRRVTPYDPANIPRDCFGGALT 141
            H GTAD GHYYS IR          DRWL FND  V P+DP+ IP +CFGG ++
Sbjct:  384 HTGTADGGHYYSYIRDRLSPSVGDADRWLWFNDSEVRPFDPSQIPVECFGGEVS 437
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BLAST of mRNA_Ecto-sp13_S_contig13666.2890.1 vs. uniprot
Match: A0A1I8I8U7_9PLAT (USP domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8I8U7_9PLAT)

HSP 1 Score: 64.3 bits (155), Expect = 8.370e-11
Identity = 29/53 (54.72%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:    1 HQGTADHGHYYSLIR-------AGGDRWLEFNDRRVTPYDPANIPRDCFGGAL 138
            H GTAD GHYYS IR          DRWL FND  V P+DP+ IP +CFGG +
Sbjct:  384 HTGTADGGHYYSYIRDRLSPSVGDADRWLWFNDSEVRPFDPSQIPVECFGGEV 436
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13666.2890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU88_ECTSI6.480e-27100.00Ubiquitin domain-containing protein (Partial) (Fra... [more]
A0A6H5KTV6_9PHAE4.190e-2697.87USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YPA6_9STRA5.450e-1565.91USP domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7S3YZF3_9EUKA7.710e-1358.70Ubiquitin carboxyl-terminal hydrolase (Fragment) n... [more]
A0A1X6PBX1_PORUM1.280e-1160.00Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
F0ZN32_DICPU3.280e-1163.64USP domain-containing protein n=1 Tax=Dictyosteliu... [more]
A0A267H646_9PLAT6.120e-1153.70USP domain-containing protein n=3 Tax=Macrostomum ... [more]
A0A267DYC9_9PLAT6.120e-1153.70USP domain-containing protein (Fragment) n=1 Tax=M... [more]
A0A1I8I193_9PLAT6.120e-1153.70USP domain-containing protein n=1 Tax=Macrostomum ... [more]
A0A1I8I8U7_9PLAT8.370e-1154.72USP domain-containing protein n=1 Tax=Macrostomum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13666contigEcto-sp13_S_contig13666:2065..2205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score110.2
Seed ortholog evalue2.7e-22
Seed eggNOG ortholog2880.D8LU88
Model size141
KEGG koko:K11840,ko:K11869
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
Cds size141
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462729.6216102-CDS-Ecto-sp13_S_contig13666:2064..22051681462729.6216102-CDS-Ecto-sp13_S_contig13666:2064..2205Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13666 2065..2205 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13666.2890.1prot_Ecto-sp13_S_contig13666.2890.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13666 2065..2205 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13666.2890.1

>prot_Ecto-sp13_S_contig13666.2890.1 ID=prot_Ecto-sp13_S_contig13666.2890.1|Name=mRNA_Ecto-sp13_S_contig13666.2890.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
HQGTADHGHYYSLIRAGGDRWLEFNDRRVTPYDPANIPRDCFGGALT
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mRNA from alignment at Ecto-sp13_S_contig13666:2065..2205-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13666.2890.1 ID=mRNA_Ecto-sp13_S_contig13666.2890.1|Name=mRNA_Ecto-sp13_S_contig13666.2890.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13666:2065..2205- (Ectocarpus species13 EcNAP12_S_4_19m)
CACCAAGGGACGGCGGACCACGGACACTACTACAGCCTCATCCGGGCGGG
CGGCGACAGGTGGCTTGAGTTCAACGACCGTCGGGTGACTCCGTACGACC
CGGCCAACATCCCCAGGGACTGCTTCGGCGGGGCCTTGACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13666:2065..2205-

>mRNA_Ecto-sp13_S_contig13666.2890.1 ID=mRNA_Ecto-sp13_S_contig13666.2890.1|Name=mRNA_Ecto-sp13_S_contig13666.2890.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13666:2065..2205- (Ectocarpus species13 EcNAP12_S_4_19m)
CACCAAGGGACGGCGGACCACGGACACTACTACAGCCTCATCCGGGCGGG
CGGCGACAGGTGGCTTGAGTTCAACGACCGTCGGGTGACTCCGTACGACC
CGGCCAACATCCCCAGGGACTGCTTCGGCGGGGCCTTGACG
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