mRNA_Ecto-sp13_S_contig1363.2867.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1363.2867.1 vs. uniprot
Match: D8LI97_ECTSI (Transmembrane protein 18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI97_ECTSI) HSP 1 Score: 373 bits (958), Expect = 2.630e-130 Identity = 193/203 (95.07%), Postives = 200/203 (98.52%), Query Frame = 1
Query: 1 MATLEEKVDQAIAEGLGEEALAEKFKHHGEAFTGFLGDVQANLLSQLNAHSIGPEGFVENFQAFRSAVDWSEPWIQGVLVFHLLLWVFFIVTRRSFGAQVGLFAVILTGTRLSEFINTYLRDRWQDFSRQNYFDEHGIFMGVMWAGPLLILGFTMLVSLLCQTASLLVTVKTKQFKREIAAKKDGGKSKAKRGAKDKKASKQA 609
MAT+ EKVDQAIAEGLGEEALAEKF+ HG+AFTGFLGDVQANLLSQLNAHS+GPEGFVENFQAFRSAVDWSEPWIQG+LVFHLLLWVFFIVTRRSFGAQVGLFAV+LTGTRLSEFINT LRDRWQ+FSRQNYFDEHGIFMGVMWAGPLLILGFTMLVSLLCQTASLLVTVKTKQFKREIAAKKDGGKSKAKRGAKDKKASKQA
Sbjct: 1 MATVAEKVDQAIAEGLGEEALAEKFEQHGDAFTGFLGDVQANLLSQLNAHSVGPEGFVENFQAFRSAVDWSEPWIQGILVFHLLLWVFFIVTRRSFGAQVGLFAVVLTGTRLSEFINTCLRDRWQNFSRQNYFDEHGIFMGVMWAGPLLILGFTMLVSLLCQTASLLVTVKTKQFKREIAAKKDGGKSKAKRGAKDKKASKQA 203
BLAST of mRNA_Ecto-sp13_S_contig1363.2867.1 vs. uniprot
Match: A0A835ZFQ2_9STRA (Transmembrane protein 18 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFQ2_9STRA) HSP 1 Score: 136 bits (343), Expect = 1.940e-37 Identity = 70/149 (46.98%), Postives = 99/149 (66.44%), Query Frame = 1
Query: 103 FLGDVQANLLSQLNAHSIGPEGFVENFQAFRSAVDWSEPWIQGVLVFHLLLWVFFIVTRRSFGAQVGLFAVILTGTRLSEFINTYLRDRWQDFSRQNYFDEHGIFMGVMWAGPLLILGFTMLVSLLCQTASLLVTVKTKQFKREIAAKK 549
F+ ++AN+L Q GP+GF+EN QAF +AVDWSE WIQ +L FH+ + +++R Q+ LF I R +E+ N Y RW+DF+RQNYFDE G+F+GV+W PLL++ ML+ + ++A LLVTVK Q +REIAA+K
Sbjct: 12 FIASLEANML-QAAKSGPGPQGFIENCQAFCAAVDWSETWIQAILCFHVAVAAAALLSRNRLNCQIALFLSICALVRGAEWANAYAARRWRDFARQNYFDERGVFVGVVWCAPLLLVLLGMLLGFVVRSARLLVTVKRAQLRREIAARK 159
BLAST of mRNA_Ecto-sp13_S_contig1363.2867.1 vs. uniprot
Match: A0A7S2Y0G5_9STRA (Transmembrane protein 18 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0G5_9STRA) HSP 1 Score: 130 bits (326), Expect = 3.790e-34 Identity = 65/149 (43.62%), Postives = 98/149 (65.77%), Query Frame = 1
Query: 106 LGDVQANLLSQLNAHSIGPEGFVENFQAFRSAVDWSEPWIQGVLVFHLLLWVFFIVTRRSFGAQVGLFAVILTGTRLSEFINTYLRDRWQDFSRQNYFDEHGIFMGVMWAGPLLILGFTMLVSLLCQTASLLVTVKTKQFKREIAAKKD 552
+ ++ +L GPEGF EN +AF++AV+W E WIQG+L FH++++V +V R++F QV +F +I+ SE INT ++ WQ+FS Q+YFD +G+FM VM+AGPLL++GF L + L +A LLV VK + K+ + K D
Sbjct: 53 IASLEDQVLQMARESGAGPEGFWENVEAFKAAVNWEERWIQGILAFHVIVFVLMLVFRKNFNVQVCIFLLIVGLVSCSETINTLGQNHWQEFSTQDYFDPNGLFMMVMFAGPLLLIGFLQLFNFLLISADLLVKVKRAELKKHMREKND 201
BLAST of mRNA_Ecto-sp13_S_contig1363.2867.1 vs. uniprot
Match: A0A7S4A3H0_9STRA (Transmembrane protein 18 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3H0_9STRA) HSP 1 Score: 119 bits (298), Expect = 4.590e-30 Identity = 67/151 (44.37%), Postives = 91/151 (60.26%), Query Frame = 1
Query: 106 LGDVQANLLSQLNAHSI--GPEGFVENFQAFRSAVDWSEPWIQGVLVFHLLLWVFFIVTRRSFGAQVGLFAVILTGTRLSEFINTYLRDRWQDFSRQNYFDEHGIFMGVMWAGPLLILGFTMLVSLLCQTASLLVTVKTKQFK---REIAA 543
L DV L Q+ A + P+ F E AF +AVDW E WI+ +L++HL LWV F+ TR++F Q GLF I L+E +N RW+ F+ QNYFDE G+F G+M PLL L F ML++ L +S+LVTVK +F+ RE+ A
Sbjct: 31 LNDVVEGLKDQIFADHVKGAPQTFREECAAFIAAVDWRENWIRCLLLWHLSLWVLFVFTRKNFPVQCGLFFGIAACVALAETLNGLCAKRWEKFATQNYFDERGVFAGIMLCAPLLALAFAMLLNFLVMASSMLVTVKRAEFRGKARELGA 181
BLAST of mRNA_Ecto-sp13_S_contig1363.2867.1 vs. uniprot
Match: A0A837A383_9ROSI (Transmembrane protein 18 n=4 Tax=Salix TaxID=40685 RepID=A0A837A383_9ROSI) HSP 1 Score: 112 bits (281), Expect = 4.550e-28 Identity = 58/147 (39.46%), Postives = 87/147 (59.18%), Query Frame = 1
Query: 88 EAFTGFLGDVQANLLSQLNAHSIGPEGFVENFQAFRSAVDWSEPWIQGVLVFHLLLWVFFIVTRRSFGAQVGLFAVILTGTRLSEFINTYLRDRWQDFSRQNYFDEHGIFMGVMWAGPLLILGFTMLVSLLCQTASLLVTVKTKQFK 528
EA + D+ L S+L + G + ++NF F A+DW EPWI G+ FHLLL + IV+R+ Q+ LF + L G LSE +N L D W+ F+ QNYFD HG+F+ V+W+GPLLI+ +L++ L ++V K + +
Sbjct: 9 EAHMDQMADLVQKLSSELRS---GIKPSIDNFVGFFHAIDWKEPWIMGLTGFHLLLLILTIVSRKHINFQMSLFLLALAGVYLSERLNRVLSDNWRSFASQNYFDPHGVFLSVLWSGPLLIIAIIILINTLFSLCYMIVRWKRAELR 152
BLAST of mRNA_Ecto-sp13_S_contig1363.2867.1 vs. uniprot
Match: A0A7S2SGF8_9STRA (Transmembrane protein 18 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SGF8_9STRA) HSP 1 Score: 111 bits (277), Expect = 2.860e-27 Identity = 56/125 (44.80%), Postives = 80/125 (64.00%), Query Frame = 1
Query: 160 PEGFVENFQAFRSAVDWSEPWIQGVLVFHLLLWVFFIVTRRSFGAQVGLFAVILTGTRLSEFINTYLRDRWQDFSRQNYFDEHGIFMGVMWAGPLLILGFTMLVSLLCQTASLLVTVKTKQFKRE 534
P G +++ QAF +AVDWSE WIQ +L FH+ LW+ + TRR Q G F + +E +NT+ WQDFS+Q+YF +G F+GVM+A PLL L +++ LC A+LLV VK K+ +R+
Sbjct: 49 PSGLLDDIQAFTAAVDWSERWIQALLGFHVALWMITLWTRRYIWWQCGTFFAVCGLVWSAEPMNTWAAAHWQDFSKQDYFQPNGFFVGVMYAAPLLALAMFQMINFLCIAANLLVEVKRKELRRK 173
BLAST of mRNA_Ecto-sp13_S_contig1363.2867.1 vs. uniprot
Match: A0A5N6P3C3_9ASTR (Transmembrane protein 18 n=2 Tax=Asteraceae TaxID=4210 RepID=A0A5N6P3C3_9ASTR) HSP 1 Score: 109 bits (273), Expect = 6.790e-27 Identity = 51/125 (40.80%), Postives = 80/125 (64.00%), Query Frame = 1
Query: 154 IGPEGFVENFQAFRSAVDWSEPWIQGVLVFHLLLWVFFIVTRRSFGAQVGLFAVILTGTRLSEFINTYLRDRWQDFSRQNYFDEHGIFMGVMWAGPLLILGFTMLVSLLCQTASLLVTVKTKQFK 528
IG + ++NF F A+DW EPW+ G++VFHL++ + I +R++ Q+ LF + L G L+E +NT L + W+ F+ QNYFD HG+F+ V+W+GPLL+ +LV+ L L+V K + K
Sbjct: 28 IGMQPAMDNFIGFFHAIDWKEPWLVGLMVFHLVVLIIIITSRKNINFQMYLFLLSLAGVYLAERLNTVLSNNWKSFAGQNYFDRHGVFLSVLWSGPLLVFATIILVNTLFSLCHLIVKWKRAELK 152
BLAST of mRNA_Ecto-sp13_S_contig1363.2867.1 vs. uniprot
Match: U5FW19_POPTR (Transmembrane protein 18 n=8 Tax=Populus TaxID=3689 RepID=U5FW19_POPTR) HSP 1 Score: 109 bits (272), Expect = 1.010e-26 Identity = 57/154 (37.01%), Postives = 89/154 (57.79%), Query Frame = 1
Query: 67 EKFKHHGEAFTGFLGDVQANLLSQLNAHSIGPEGFVENFQAFRSAVDWSEPWIQGVLVFHLLLWVFFIVTRRSFGAQVGLFAVILTGTRLSEFINTYLRDRWQDFSRQNYFDEHGIFMGVMWAGPLLILGFTMLVSLLCQTASLLVTVKTKQFK 528
E+ K EA + D+ L S+L + G ++NF F A+DW+EPW+ G++ FHL L + +V+R+ Q+ F V L G LSE +N L D W+ F+ QNYFD HG+F+ V+W+GPLLI+ +L++ L ++V K + +
Sbjct: 2 EELKSALEAHMDQMADLVQKLSSELRS---GFRPAIDNFIGFFHAIDWTEPWLMGLIGFHLALLILTVVSRKHINFQMSFFLVALAGVYLSERLNRVLGDNWRSFASQNYFDPHGLFLSVLWSGPLLIIATIILINTLFSLCFMIVRWKRAELR 152
BLAST of mRNA_Ecto-sp13_S_contig1363.2867.1 vs. uniprot
Match: A0A2J6L7N8_LACSA (Transmembrane protein 18 n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6L7N8_LACSA) HSP 1 Score: 107 bits (267), Expect = 5.360e-26 Identity = 50/140 (35.71%), Postives = 85/140 (60.71%), Query Frame = 1
Query: 112 DVQANLLSQLNAH-SIGPEGFVENFQAFRSAVDWSEPWIQGVLVFHLLLWVFFIVTRRSFGAQVGLFAVILTGTRLSEFINTYLRDRWQDFSRQNYFDEHGIFMGVMWAGPLLILGFTMLVSLLCQTASLLVTVKTKQFK 528
D L+ ++++ IG + ++NF F A+DW EPW+ G++VFH + + + +R++ Q+ LF + L G L+E +NT L D W+ F+ QNYFD +G+F+ V+W+GPLL+ +LV+ L L+V K + +
Sbjct: 13 DQMQELVEKISSELRIGMQPAMDNFIGFFHAIDWKEPWLVGLMVFHFVTLIIILTSRKNINFQMSLFLLSLAGVYLAERLNTVLSDNWKSFAGQNYFDRNGVFLSVLWSGPLLVFSLIILVNTLFSLCQLMVKWKRAELR 152
BLAST of mRNA_Ecto-sp13_S_contig1363.2867.1 vs. uniprot
Match: UPI001CF95CC8 (transmembrane protein 18-like n=3 Tax=Anacardiaceae TaxID=4011 RepID=UPI001CF95CC8) HSP 1 Score: 107 bits (266), Expect = 7.560e-26 Identity = 53/147 (36.05%), Postives = 86/147 (58.50%), Query Frame = 1
Query: 88 EAFTGFLGDVQANLLSQLNAHSIGPEGFVENFQAFRSAVDWSEPWIQGVLVFHLLLWVFFIVTRRSFGAQVGLFAVILTGTRLSEFINTYLRDRWQDFSRQNYFDEHGIFMGVMWAGPLLILGFTMLVSLLCQTASLLVTVKTKQFK 528
EA + D+ L S+L + G + ENF F A++W EPW+ G++ FH+LL + I +R++ Q+ LF + L G +E++N L W+ F+ QNYFD HG+F+ V+W+GPLL++ +LV+ L L+V K + +
Sbjct: 9 EAHMDQMADLVQKLSSELRS---GLQPAYENFMGFFHAINWKEPWLMGLMAFHILLLIVVIFSRQNVNFQMCLFLMALAGVYFAEYLNRILEKNWRSFATQNYFDPHGLFLSVLWSGPLLVIAIIILVNTLFSLCYLIVRWKKAELR 152 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1363.2867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1363.2867.1 >prot_Ecto-sp13_S_contig1363.2867.1 ID=prot_Ecto-sp13_S_contig1363.2867.1|Name=mRNA_Ecto-sp13_S_contig1363.2867.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=204bp MATLEEKVDQAIAEGLGEEALAEKFKHHGEAFTGFLGDVQANLLSQLNAHback to top mRNA from alignment at Ecto-sp13_S_contig1363:11592..14102- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1363.2867.1 ID=mRNA_Ecto-sp13_S_contig1363.2867.1|Name=mRNA_Ecto-sp13_S_contig1363.2867.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2511bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1363:11592..14102- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1363:11592..14102- >mRNA_Ecto-sp13_S_contig1363.2867.1 ID=mRNA_Ecto-sp13_S_contig1363.2867.1|Name=mRNA_Ecto-sp13_S_contig1363.2867.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1363:11592..14102- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |