mRNA_Ecto-sp13_S_contig1363.2866.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1363.2866.1
Unique NamemRNA_Ecto-sp13_S_contig1363.2866.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1363.2866.1 vs. uniprot
Match: D8LI98_ECTSI (Stc1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI98_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 7.220e-65
Identity = 154/173 (89.02%), Postives = 156/173 (90.17%), Query Frame = 2 
Query:    2 CKECVAKAATEERER*T*VVKLPHQ*PL*GKDEPLSCSVCKQKSLPRSNFTNTQARKPDASRKCRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPKGAAXXAARLKAASAECAREAEKVTGLKPLVGAGKRGGRGPGRGRTWRGRASSGPATRGRVGGRASGGRGET 520
            CKECVAKAATEERER +   K        GKDEPLSCS CKQKSLPRS+FTNTQARKPDASRKCRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPKGAA  AARLKAASAECAREAEKVTGLKPLVGAGKRGGRGPGRGRTWRGRASSGPATRGR GGRA GGRGET
Sbjct:   47 CKECVAKAATEERERASQNSKASSNGGE-GKDEPLSCSACKQKSLPRSSFTNTQARKPDASRKCRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPKGAAGAAARLKAASAECAREAEKVTGLKPLVGAGKRGGRGPGRGRTWRGRASSGPATRGRAGGRAGGGRGET 218
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BLAST of mRNA_Ecto-sp13_S_contig1363.2866.1 vs. uniprot
Match: A0A6H5KHQ9_9PHAE (Stc1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ9_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.260e-22
Identity = 93/112 (83.04%), Postives = 96/112 (85.71%), Query Frame = 2 
Query:    2 CKECVAKAATEERER*T*VVKLPHQ*PL*GKDEPLSCSVCKQKSLPRSNFTNTQARKPDASRKCRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPKGAAXXAARLK 337
            CKECVAKAATEERER +   K        GKDEPLSCSVCKQK LPRS+FTNTQARKP+ SRKCRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPKGAA  AARLK
Sbjct:   66 CKECVAKAATEERERASENSKASSNDGE-GKDEPLSCSVCKQKRLPRSSFTNTQARKPETSRKCRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPKGAAGVAARLK 176
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1363.2866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI98_ECTSI7.220e-6589.02Stc1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KHQ9_9PHAE1.260e-2283.04Stc1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1363contigEcto-sp13_S_contig1363:9530..10967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size549
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_003700.1
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462727.7142508-CDS-Ecto-sp13_S_contig1363:9529..96171681462727.7142508-CDS-Ecto-sp13_S_contig1363:9529..9617Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1363 9530..9617 +
1681462727.7230618-CDS-Ecto-sp13_S_contig1363:10080..101781681462727.7230618-CDS-Ecto-sp13_S_contig1363:10080..10178Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1363 10081..10178 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462727.7311401-UTR-Ecto-sp13_S_contig1363:10178..103301681462727.7311401-UTR-Ecto-sp13_S_contig1363:10178..10330Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1363 10179..10330 +
1681462727.7391698-UTR-Ecto-sp13_S_contig1363:10756..109671681462727.7391698-UTR-Ecto-sp13_S_contig1363:10756..10967Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1363 10757..10967 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1363.2866.1prot_Ecto-sp13_S_contig1363.2866.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1363 9530..10178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1363.2866.1

>prot_Ecto-sp13_S_contig1363.2866.1 ID=prot_Ecto-sp13_S_contig1363.2866.1|Name=mRNA_Ecto-sp13_S_contig1363.2866.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp
MQGMRSKSGDGGARKVNISSQAATPVATIGQGRAALVQRLQTEKPSPVEL
HQHPGTKARRL*
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mRNA from alignment at Ecto-sp13_S_contig1363:9530..10967+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1363.2866.1 ID=mRNA_Ecto-sp13_S_contig1363.2866.1|Name=mRNA_Ecto-sp13_S_contig1363.2866.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1363:9530..10967+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAAGGAATGCGTAGCAAAAGCGGCGACGGAGGAGCGCGAAAGGTGAA
CATAAGTAGTCAAGCTGCCACACCAGTAGCCACTATAGGTTGGTGGTGCC
ACTGTCACAGCGATTATTCCCATCTCGTCGTGGGAAGGTTATGATGTGTG
TCGTGTTACAGCTGGGCTACGGTAAATGTCGGCAGGTTTACTCTTGCGGC
CGTTCCGCAAGGTGAAACATGCCTGCCGGTGGGTGACAGGCCAGGCCGTG
TTGTTCGCTTCGAAGACACGCTACGTATGCATATGCATCCTGTATGAAGT
CCCTCCCCGCCCGACGCGTCTGGACTTCGCCCCACCCCGACTGCGTATTC
GCCCCACTCCGAGTGTGTGCTATTGTCAACCTACTCGGGTTCAGTTTCCT
CCTTCCACGAAAACCAGCACCCGTTCATCAAATAAATACAAAGACGGTCG
TTCGCTCTGACCTATTTCCTGTTCCTCGCGCGCCCTCCCCCCCGCACCAT
TTAACAACCAGGGCGTCCCAAAATAGCAAAGCGAGCAGCACCGACGGTGA
GGGCAAGGACGAGCCGCTCTCGTGCAGCGTCTGCAAACAGAAAAGCCTTC
CCCGGTCGAACTTCACCAACACCCAGGCACGAAAGCCCGACGCCTCTAGG
AAGTGCCGCGACTGCTCCGCCGCCGCCGAAGCCGCCGAGGCGGAGGCCCT
GAGGGCAGCGCGCGGGGCCAAGATGACCAACGCGCAGGCGGCGTCCGCGT
CCGCGGCCGCGCTTCCCAAGGGTGCCGCCGGGGCGGCAGCCCGCCTCAAA
GGTTTGACGTTTCTCGTGGTGGCGTTGGTGGTATGTATGATACGCCTTTG
AAACATGCCAAGATCAGTTTCCCTTCTACTACTGTGCTGTATTACCTGGT
GGCGAGAAGAGTCCGTGTGGGATTTGCCTGGTGCTGATTTCACACTTCAA
GGGATGTGAGGTTTGTCGTGGTGGTGGTGGCGGTCACGGTAGGCGTTACA
TCGAAAAATTGGGAGAAGCCAACACATGACATACTTAATAGTTCGTAGCG
AAGCAAACCCCGGCTTCTCCCAGTGGTTTTGGAGTAGTCAGGCACTGTTG
ATGACGACAACCACAGCCTTTGATGTGTCGTTGCCCCTGTTTATGCCCAC
ACGCTGACAAAACCTCCCCCTTCTTGTGATTAAACAATCATGTATCCAAC
GCCGTTCTACCCGCTTGCTCCTCACAGCTGCCAGCGCGGAGTGCGCCCGG
GAGGCGGAAAAGGTGACCGGTTTAAAACCCTTAGTAGGCGCCGGGAAGCG
GGGAGGGCGGGGGCCGGGAAGAGGAAGGACCTGGCGAGGACGAGCCAGCT
CGGGCCCAGCAACCCGAGGGAGAGTAGGAGGGAGAGCAAGCGGCGGGAGA
GGGGAGACTTAATATGTGCGAGGCCTGATGTGCGAGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1363:9530..10967+

>mRNA_Ecto-sp13_S_contig1363.2866.1 ID=mRNA_Ecto-sp13_S_contig1363.2866.1|Name=mRNA_Ecto-sp13_S_contig1363.2866.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1363:9530..10967+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAAGGAATGCGTAGCAAAAGCGGCGACGGAGGAGCGCGAAAGGTGAA
CATAAGTAGTCAAGCTGCCACACCAGTAGCCACTATAGGGCAAGGACGAG
CCGCTCTCGTGCAGCGTCTGCAAACAGAAAAGCCTTCCCCGGTCGAACTT
CACCAACACCCAGGCACGAAAGCCCGACGCCTCTAG
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