mRNA_Ecto-sp13_S_contig13611.2857.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13611.2857.1
Unique NamemRNA_Ecto-sp13_S_contig13611.2857.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13611.2857.1 vs. uniprot
Match: C5KUT3_PERM5 (Regulatory protein, putative (Fragment) n=2 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KUT3_PERM5)

HSP 1 Score: 63.2 bits (152), Expect = 3.990e-10
Identity = 27/43 (62.79%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    7 QVWDVASGQCVHTLRGHNDEILDVSFNATGSRLVTASADGTSR 135
            +VWD  +GQ + TL+GH DE+LDV FN+TGSR+ TASADGT++
Sbjct:    2 KVWDGDTGQLLDTLKGHQDEVLDVVFNSTGSRIATASADGTAK 44
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BLAST of mRNA_Ecto-sp13_S_contig13611.2857.1 vs. uniprot
Match: A0A7K5Y3F5_9CHAR (DAW1 factor (Fragment) n=5 Tax=Neognathae TaxID=8825 RepID=A0A7K5Y3F5_9CHAR)

HSP 1 Score: 61.2 bits (147), Expect = 4.900e-9
Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 TVQVWDVASGQCVHTLRGHNDEILDVSFNATGSRLVTASADGTSRVFN 144
            +VQ+W+  +G  + TL GH+DEILDV F+  G R+ TASADG+SR++N
Sbjct:  115 SVQLWNAMTGAHIATLTGHSDEILDVCFDYAGQRIATASADGSSRIYN 162
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BLAST of mRNA_Ecto-sp13_S_contig13611.2857.1 vs. uniprot
Match: A0A7L2RRB6_9PASS (DAW1 factor (Fragment) n=1 Tax=Neodrepanis coruscans TaxID=254563 RepID=A0A7L2RRB6_9PASS)

HSP 1 Score: 60.1 bits (144), Expect = 1.340e-8
Identity = 25/48 (52.08%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 TVQVWDVASGQCVHTLRGHNDEILDVSFNATGSRLVTASADGTSRVFN 144
            ++Q+W+  +G  + TL GH +E+LDV F+ TG R+VTASADG++RV+N
Sbjct:  115 SLQLWNAMTGTHIATLTGHRNEVLDVCFDFTGQRIVTASADGSARVYN 162
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BLAST of mRNA_Ecto-sp13_S_contig13611.2857.1 vs. uniprot
Match: A0A672R9L4_SINGR (Uncharacterized protein n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672R9L4_SINGR)

HSP 1 Score: 61.2 bits (147), Expect = 1.660e-8
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   10 VWDVASGQCVHTLRGHNDEILDVSFNATGSRLVTASADG 126
            VWD  SGQC+ TL GHNDE+LDV FN TG  + TASADG
Sbjct:  275 VWDADSGQCLATLLGHNDEVLDVCFNYTGQLIATASADG 313
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BLAST of mRNA_Ecto-sp13_S_contig13611.2857.1 vs. uniprot
Match: A0A4S2LNK7_OPIFE (Uncharacterized protein n=1 Tax=Opisthorchis felineus TaxID=147828 RepID=A0A4S2LNK7_OPIFE)

HSP 1 Score: 61.2 bits (147), Expect = 2.020e-8
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   10 VWDVASGQCVHTLRGHNDEILDVSFNATGSRLVTASADGTSRVFN 144
            VWD  +G+ +H L GH DE+LDV+F+A+G RLV+ASAD TSRV++
Sbjct:  345 VWDTRTGRQLHVLTGHLDEVLDVTFDASGRRLVSASADSTSRVWD 389
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BLAST of mRNA_Ecto-sp13_S_contig13611.2857.1 vs. uniprot
Match: A0A7S2TLG7_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TLG7_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 1.100e-7
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:    1 TVQVWDVASGQCVHTLRGHNDEILDVSFNATGS 99
            TV++WDV SG+C++TL GH DEILDV FNATGS
Sbjct:   50 TVKIWDVESGKCLNTLEGHEDEILDVCFNATGS 82
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BLAST of mRNA_Ecto-sp13_S_contig13611.2857.1 vs. uniprot
Match: A0A6V7H851_9HYME (Hypothetical protein (Fragment) n=1 Tax=Heterotrigona itama TaxID=395501 RepID=A0A6V7H851_9HYME)

HSP 1 Score: 54.7 bits (130), Expect = 6.690e-7
Identity = 22/48 (45.83%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 TVQVWDVASGQCVHTLRGHNDEILDVSFNATGSRLVTASADGTSRVFN 144
            T +VW+     C+ TLR H+DE+LD++FN  G +L +AS+D T+RV++
Sbjct:    4 TAKVWETRMNSCLATLREHDDEVLDLTFNNNGKKLASASSDTTARVWD 51
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BLAST of mRNA_Ecto-sp13_S_contig13611.2857.1 vs. uniprot
Match: A0A3B4AGF3_9GOBI (Dynein assembly factor with WDR repeat domains 1 n=2 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B4AGF3_9GOBI)

HSP 1 Score: 56.2 bits (134), Expect = 1.090e-6
Identity = 23/43 (53.49%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   10 VWDVASGQCVHTLRGHNDEILDVSFNATGSRLVTASADGTSRV 138
            +WD +SG CV TL GH +E+LD+ FN   +RL+TAS+D T+R+
Sbjct:  303 LWDTSSGNCVATLEGHKEELLDLCFNPQSTRLLTASSDRTARL 345
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BLAST of mRNA_Ecto-sp13_S_contig13611.2857.1 vs. uniprot
Match: A0A4P1QPX2_LUPAN (Uncharacterized protein n=3 Tax=Lupinus TaxID=3869 RepID=A0A4P1QPX2_LUPAN)

HSP 1 Score: 56.2 bits (134), Expect = 1.090e-6
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    4 VQVWDVASGQCVHTLRGHNDEILDVSFNATGSRLVTASADGTSRVF 141
            V++WD  SG+CV T RGH+D I  +S +A    LV+AS DGT+RVF
Sbjct:  341 VRLWDSRSGECVRTFRGHSDAIQSISVSANKDYLVSASIDGTARVF 386
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BLAST of mRNA_Ecto-sp13_S_contig13611.2857.1 vs. uniprot
Match: K8F226_9CHLO (Angio-associated migratory cell protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8F226_9CHLO)

HSP 1 Score: 52.0 bits (123), Expect = 1.620e-6
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    4 VQVWDVASGQCVHTLRGHNDEILDVSFNATGSRLVTASADGTSRVFN 144
            V++WD  + QCV   +GH   ILD + +   +R++TAS DGTSRVFN
Sbjct:   19 VRLWDARTSQCVREQQGHTKAILDFALSPDYARVLTASDDGTSRVFN 65
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13611.2857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
C5KUT3_PERM53.990e-1062.79Regulatory protein, putative (Fragment) n=2 Tax=Pe... [more]
A0A7K5Y3F5_9CHAR4.900e-954.17DAW1 factor (Fragment) n=5 Tax=Neognathae TaxID=88... [more]
A0A7L2RRB6_9PASS1.340e-852.08DAW1 factor (Fragment) n=1 Tax=Neodrepanis corusca... [more]
A0A672R9L4_SINGR1.660e-869.23Uncharacterized protein n=1 Tax=Sinocyclocheilus g... [more]
A0A4S2LNK7_OPIFE2.020e-860.00Uncharacterized protein n=1 Tax=Opisthorchis felin... [more]
A0A7S2TLG7_9EUKA1.100e-772.73Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A6V7H851_9HYME6.690e-745.83Hypothetical protein (Fragment) n=1 Tax=Heterotrig... [more]
A0A3B4AGF3_9GOBI1.090e-653.49Dynein assembly factor with WDR repeat domains 1 n... [more]
A0A4P1QPX2_LUPAN1.090e-654.35Uncharacterized protein n=3 Tax=Lupinus TaxID=3869... [more]
K8F226_9CHLO1.620e-648.94Angio-associated migratory cell protein n=1 Tax=Ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13611contigEcto-sp13_S_contig13611:650..1722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop0
Start0
Seed ortholog score62.8
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog9258.ENSOANP00000025475
Preferred nameDAW1
Model size378
KEGG koko:K19760
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007275,GO:0007368,GO:0007389,GO:0008150,GO:0009799,GO:0009855,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032501,GO:0032502,GO:0034622,GO:0035082,GO:0040011,GO:0043933,GO:0044085,GO:0044424,GO:0044464,GO:0044782,GO:0048856,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0120031,GO:0120036
Exons2
EggNOG free text desc.Dynein assembly factor with WDR repeat domains 1
EggNOG OGs3AFR9@33154,3B9C4@33208,3CZSY@33213,KOG0272@1,KOG0272@2759
Cds size378
COG Functional cat.A
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462726.9672904-CDS-Ecto-sp13_S_contig13611:649..8501681462726.9672904-CDS-Ecto-sp13_S_contig13611:649..850Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13611 650..850 +
1681462726.9779882-CDS-Ecto-sp13_S_contig13611:1545..17221681462726.9779882-CDS-Ecto-sp13_S_contig13611:1545..1722Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13611 1546..1722 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13611.2857.1prot_Ecto-sp13_S_contig13611.2857.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13611 650..1722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13611.2857.1

>prot_Ecto-sp13_S_contig13611.2857.1 ID=prot_Ecto-sp13_S_contig13611.2857.1|Name=mRNA_Ecto-sp13_S_contig13611.2857.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
TVQVWDVASGQCVHTLRGHNDEILDVSFNATGSRLVTASADGTSRVFNTM
NGACQAILIGHEGEISKTCFNPQGTRILTASSDKVARLWDADTGDCLQIL
EGHTDEIFSCAFNYEGDTIITGTMSI
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mRNA from alignment at Ecto-sp13_S_contig13611:650..1722+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13611.2857.1 ID=mRNA_Ecto-sp13_S_contig13611.2857.1|Name=mRNA_Ecto-sp13_S_contig13611.2857.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1073bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13611:650..1722+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCGTACAGGTGTGGGACGTCGCCTCGGGACAGTGTGTCCACACGCTCCG
CGGGCACAACGACGAGATCTTGGACGTGAGCTTCAACGCCACGGGGTCGA
GGCTGGTGACGGCGAGCGCCGACGGCACCTCGAGGGTGTTCAATACGATG
AACGGGGCTTGCCAGGCTATCCTCATCGGCCACGAGGGGGAGATATCGAA
GGTTCGTTCTTACCGCTGAGGGTACCAACAGAATCGGTCCCGCGTCCCAC
CATCGCTTTTGAGCGTCAAAAAAATTATTGCTGTTTGCTTGTAAGTGATC
CAATTCAACTTGAAGAGGATGCACAGGGTGTGCCGGGCGATCTTCACCAG
TAGGTAGAGGTAGATACTTTTGGATAAGTGTGTACGGAAACGTCGACACA
GGTTCTGTTGCTCTGAGCTCTATGGTGTGGTGAGTACACGAGGAGGGCTC
GCTTCTTCGGCACTTCCGTAGGATAGCAAGCAAAATTCAATATGCTCCTC
CAGACGTGCTGTAGGGGACTGCGGGGAGTAGAGTCGGAAGTTGTCAAAGG
CTTCTGTGAGTTGTACTTCGGCAGATACGAGCCCCATCCGCTCCGCAGTT
TCTTCATCGCTATGCGGACAATAATCGTTGCCGACAATACACGGGCGAAC
ACCGATAGATCAGTTCAATTTGTGCACAAGGGCAAACACATCCATCAGCC
CAACCCCGACTACCCACCCCCACCACGACCGTGTTATCCAGTCTTGGCTG
GTGCCCGAGGTGCCGCGCGTTCTGTAGATAAAAAATTTGACCATAGTACA
TAACACCATTCACCGAGCAATTGCACACGCACATTGCTGCACACGCAACA
ACACTCTCCCTGATGTCCAGCACCCCGACCCCCTCCTCTTCTTCAGACTT
GCTTCAACCCCCAGGGGACTCGCATCCTCACGGCGAGCAGCGACAAGGTG
GCTCGCCTGTGGGACGCCGACACGGGCGACTGCCTGCAGATCCTGGAAGG
GCACACGGACGAGATATTTTCCTGCGCCTTCAACTACGAGGGAGACACCA
TAATCACAGGCACGATGTCCATA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13611:650..1722+

>mRNA_Ecto-sp13_S_contig13611.2857.1 ID=mRNA_Ecto-sp13_S_contig13611.2857.1|Name=mRNA_Ecto-sp13_S_contig13611.2857.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13611:650..1722+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCGTACAGGTGTGGGACGTCGCCTCGGGACAGTGTGTCCACACGCTCCG
CGGGCACAACGACGAGATCTTGGACGTGAGCTTCAACGCCACGGGGTCGA
GGCTGGTGACGGCGAGCGCCGACGGCACCTCGAGGGTGTTCAATACGATG
AACGGGGCTTGCCAGGCTATCCTCATCGGCCACGAGGGGGAGATATCGAA
GACTTGCTTCAACCCCCAGGGGACTCGCATCCTCACGGCGAGCAGCGACA
AGGTGGCTCGCCTGTGGGACGCCGACACGGGCGACTGCCTGCAGATCCTG
GAAGGGCACACGGACGAGATATTTTCCTGCGCCTTCAACTACGAGGGAGA
CACCATAATCACAGGCACGATGTCCATA
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