mRNA_Ecto-sp13_S_contig13567.2831.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13567.2831.1
Unique NamemRNA_Ecto-sp13_S_contig13567.2831.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13567.2831.1 vs. uniprot
Match: D8LGV6_ECTSI (Glycosyl transferase family 2 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGV6_ECTSI)

HSP 1 Score: 579 bits (1492), Expect = 3.350e-199
Identity = 300/327 (91.74%), Postives = 309/327 (94.50%), Query Frame = 1 
Query:   13 QTLIKPGNAYPIKSQDWATRVYAAKSAKSQASKGAGPEEIGRAALSKRLAARQQEGPREESGGTAAVLTLLVADAKKPQPFLSALGGRHSWDPEHRATTAAVGEGEAEWAWEEVFVCEEDEGALDGILGSRGEGEAWREALERGAVKLVPCGSGGADERRAGELSVACAAGDSSVSEFVWLPGPGVAEALGMADAKRSTPSGRGAEVLSELYRAATATGVEGVFGVRGWQRTQDAPRPKRQRRGLLVQSGGVVGGEPRRDVLEPAQPDGGPEGETAGGRGRSLLKAFKRTGRDEKPWQFVGGAGAGAEAGAGLAEVDALTDALFVRG 993
            +TLIKPG AYPIKSQDWATRVYAAKSA+SQASKGAGP+EIGRAALSKRLAARQ +GPREESGGTAAVLTLLVADAKKPQPFLSALGGR SWDPEHRAT AA G GEAEWAWEEVFVCEEDEGALDGILGSRGEGEAWREALERGAVKLVPC SGGADERRAGELS+ACAAGD+SVSEFVW+PGP VAEALGMADAKRSTPSGRGAEV++ L RAA ATGVEGVFGVRGWQRTQDAPRPKRQRRGLLVQSGGVVGGEPRRD  EPAQPDG PEGETAGG  RSLLKAFKRTGRDEKPWQFVGGAGAGAE GAGL EVDALTDALFVRG
Sbjct:  125 ETLIKPGKAYPIKSQDWATRVYAAKSARSQASKGAGPDEIGRAALSKRLAARQLQGPREESGGTAAVLTLLVADAKKPQPFLSALGGRQSWDPEHRATAAAAGAGEAEWAWEEVFVCEEDEGALDGILGSRGEGEAWREALERGAVKLVPCSSGGADERRAGELSLACAAGDASVSEFVWVPGPAVAEALGMADAKRSTPSGRGAEVVARLSRAAAATGVEGVFGVRGWQRTQDAPRPKRQRRGLLVQSGGVVGGEPRRDAPEPAQPDGEPEGETAGGGRRSLLKAFKRTGRDEKPWQFVGGAGAGAETGAGLVEVDALTDALFVRG 451
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13567.2831.1 vs. uniprot
Match: A0A6H5KY98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY98_9PHAE)

HSP 1 Score: 517 bits (1332), Expect = 7.550e-174
Identity = 271/327 (82.87%), Postives = 285/327 (87.16%), Query Frame = 1 
Query:   13 QTLIKPGNAYPIKSQDWATRVYAAKSAKSQASKGAGPEEIGRAALSKRLAARQQEGPREESGGTAAVLTLLVADAKKPQPFLSALGGRHSWDPEHRATTAAVGEGEAEWAWEEVFVCEEDEGALDGILGSRGEGEAWREALERGAVKLVPCGSGGADERRAGELSVACAAGDSSVSEFVWLPGPGVAEALGMADAKRSTPSGRGAEVLSELYRAATATGVEGVFGVRGWQRTQDAPRPKRQRRGLLVQSGGVVGGEPRRDVLEPAQPDGGPEGETAGGRGRSLLKAFKRTGRDEKPWQFVGGAGAGAEAGAGLAEVDALTDALFVRG 993
            + LIKPG  YPI+S+DWA+RVYAAKSA+SQASKGAGP+                EGPREESGGTAAVLTLLVAD K+PQPFLSALGGR +WDPEHR TTAA G GEAEWAWEEVFVCEEDEGALDGILGSRGE EAWREALERGAVKLVPC  GGADERRAGELS+ACAAGD+SVSEFVWLPGP VAEALG ADAKRSTPSGRGAEV+SELYRAA+ATGV GVFGVRGWQRTQDAPRPKRQRRGLL+QSGG VGGEPR DV EPAQPDG PEGETAGGRGR LLKAFKRT RDE PW FVGGA AGA+A A L EVDALTDALFVRG
Sbjct:  120 EKLIKPGKTYPIQSRDWASRVYAAKSARSQASKGAGPD----------------EGPREESGGTAAVLTLLVADTKQPQPFLSALGGRQNWDPEHRTTTAAAGAGEAEWAWEEVFVCEEDEGALDGILGSRGEREAWREALERGAVKLVPCSFGGADERRAGELSLACAAGDASVSEFVWLPGPRVAEALGRADAKRSTPSGRGAEVVSELYRAASATGVGGVFGVRGWQRTQDAPRPKRQRRGLLIQSGGGVGGEPRSDVPEPAQPDGEPEGETAGGRGRRLLKAFKRTRRDENPWHFVGGASAGAKADASLVEVDALTDALFVRG 430
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13567.2831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGV6_ECTSI3.350e-19991.74Glycosyl transferase family 2 protein n=1 Tax=Ecto... [more]
A0A6H5KY98_9PHAE7.550e-17482.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13567contigEcto-sp13_S_contig13567:653..4545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size993
Hectar predicted targeting categoryother localisation
Exons5
Cds size993
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462724.683573-CDS-Ecto-sp13_S_contig13567:652..8851681462724.683573-CDS-Ecto-sp13_S_contig13567:652..885Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13567 653..885 -
1681462724.692759-CDS-Ecto-sp13_S_contig13567:1428..15381681462724.692759-CDS-Ecto-sp13_S_contig13567:1428..1538Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13567 1429..1538 -
1681462724.7032309-CDS-Ecto-sp13_S_contig13567:2707..29011681462724.7032309-CDS-Ecto-sp13_S_contig13567:2707..2901Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13567 2708..2901 -
1681462724.7136254-CDS-Ecto-sp13_S_contig13567:3386..37131681462724.7136254-CDS-Ecto-sp13_S_contig13567:3386..3713Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13567 3387..3713 -
1681462724.721921-CDS-Ecto-sp13_S_contig13567:4416..45451681462724.721921-CDS-Ecto-sp13_S_contig13567:4416..4545Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13567 4417..4545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13567.2831.1prot_Ecto-sp13_S_contig13567.2831.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13567 653..4545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13567.2831.1

>prot_Ecto-sp13_S_contig13567.2831.1 ID=prot_Ecto-sp13_S_contig13567.2831.1|Name=mRNA_Ecto-sp13_S_contig13567.2831.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=331bp
MAVPQTLIKPGNAYPIKSQDWATRVYAAKSAKSQASKGAGPEEIGRAALS
KRLAARQQEGPREESGGTAAVLTLLVADAKKPQPFLSALGGRHSWDPEHR
ATTAAVGEGEAEWAWEEVFVCEEDEGALDGILGSRGEGEAWREALERGAV
KLVPCGSGGADERRAGELSVACAAGDSSVSEFVWLPGPGVAEALGMADAK
RSTPSGRGAEVLSELYRAATATGVEGVFGVRGWQRTQDAPRPKRQRRGLL
VQSGGVVGGEPRRDVLEPAQPDGGPEGETAGGRGRSLLKAFKRTGRDEKP
WQFVGGAGAGAEAGAGLAEVDALTDALFVRG
back to top

mRNA from alignment at Ecto-sp13_S_contig13567:653..4545-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13567.2831.1 ID=mRNA_Ecto-sp13_S_contig13567.2831.1|Name=mRNA_Ecto-sp13_S_contig13567.2831.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3893bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13567:653..4545- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGTCCCTCAGACGTTGATCAAGCCCGGGAATGCTTACCCCATAAA
GTCTCAAGACTGGGCCACACGCGTGTACGCGGCTAAGTCGGCCAAGAGCC
AGGCTTCCAAGGGAGCAGGACCGGAAGAGGTGTGGGCTGAATTGGTTCGC
ACACGCGAGCACGGTGGGGAAACTGATTTTGTTCTCTTCTTCTGTTTTTG
GCGTGTCTCGCTTTGATTTGGTCGGCCCTATGATCATGGGTGCACCCGAT
GGTCCCCCTTTCAACGATCTCGCCACATTTTTTCGGCGATTTATGCACAC
CTCAACCGGAGATGTCATTTACCTGGTACATCAAGCGTACATGGTCTGTT
GAAGAAATGCTGGAAATATCGGCGACAAGGTTCCTTGGGGGGGTGGGAGG
GGGTTGTTAGGGGGTAGTGTTGAGGGCATTGGCCCTACCTGAAGCAGTGG
AGACGAAAAAAACGCGGGGGGGTGGGGTTACCATCTGCCGACTCAGCTGG
CATTGACCCAAGCGCGAGTCACCGTTTGGTGGGGTGCGGTCTGGAGGGAT
ACATAGGATAGACGCAACCGACTACGGATCGCCTCCCCCCCCGACAAAAA
TGAGGCATGTGCCGCCGCGATACGATGAGGCCACGCCATGTAATGGCTGG
ACAGAGGGGACGAGCAGTGCTATCCTTGGTGTGGAAACTGCGGCAAAAAC
CTCCGCCGAATATTGGCTATGTCTGAAGTTGGTTGTCAACGTCGGTAGGG
ATGTAGGACCCCAAGATCAGTTGACAAAAGGCAAACGAAAACTCTCCCCT
GCCCCCCCCCCCCCCCCCCCCCCCCCGGTCAGATCGGTCGGGCCGCGCTC
TCGAAGCGGTTGGCTGCGCGCCAGCAAGAGGGGCCGCGGGAAGAAAGCGG
AGGAACCGCTGCCGTTTTGACTCTCCTGGTGGCGGACGCCAAGAAGCCGC
AACCGTTCCTGTCGGCTCTCGGGGGGAGACACAGCTGGGACCCCGAACAT
CGTGCGACAACGGCGGCGGTAGGAGAGGGGGAAGCTGAGTGGGCTTGGGA
AGAGGTGTTCGTCTGCGAGGAGGACGAGGGCGCCCTGGACGGGATCTTGG
GCTCGCGGGGGGAGGGGGAGGCGTGGCGAGAGGCGCTCGAACGAGGGGCG
GTCAAGCTGGTGCGTTTCGCGACTGGCTTGTCGAGGATGGGTCGTCGTTT
TTTCTCTGTGTTTTCTTGTCTGTGCTATTCCCCTCGCTCGTGCTCCGTGC
CGACGCGTTGAGAGGTATGCGAGAGTCTGTGGAACGAAACATCTAGATAG
GCCTACAAGGTGATATCATGAGCACACCGTACCGCCGCCATTTTGACAGC
AGTTTGCAAGATATAGTCGTGCTGCCGGTGTAGCGACCCTTTATGTCACA
AGATGTCACAACCGCTATTGAGGACATCGCCGCTCAACTGGATTGGCAGT
TAAATACACTACAGCAGTAGTTTGACTACCGAGGTGCGGCCGTGCCACGA
GATTTTGGAATCGCTATTCAGGGCATCCCGCCATACAGGGAAGGAACTGC
GACACCGGGACCACGACTTAACCCAAAACCGTCCACATTTACTCACAAAA
AAAACAGAAACACACACACACACACACACACAACCACGCCGCAGGTACCC
TGTGGCTCCGGCGGGGCGGACGAGAGGCGAGCCGGCGAGCTGTCCGTCGC
GTGCGCCGCCGGGGACTCGTCCGTGTCCGAGTTCGTGTGGCTGCCTGGGC
CGGGGGTGGCGGAGGCCCTGGGGATGGCGGACGCGAAGCGGTCGACCCCG
TCGGGCAGGGGTGCGGAGGTGTTGTCGGAGCTCTACAGGTGTGACGTGTA
CCGCTGCTGGGTGCTATCTCGGGTAGTTTATCTTTATTTTTATTTTTTTT
TGGCGTTTTTTCAAGCGTGTGTTTTGATCAAGCGACGTTATAATTTGAGC
CATTCTCAAGGTAGAGTAGTGTTTCAGGTGGTGACACTGCTATGTATGGG
ATTTATTTTTGGGTGTTCTCCAGGCGTGCTTTCAAGCGTTATTAATGAAT
TCTCGGTGTACGAAGTAGGGCATTATTTCATGGGTGACACTATAATGGAA
CTGTTTATTTGTAAATGTTCTTCAAGCGCTCTTCAAGCGTGCTTTCAATA
TTGTTCTTGCGATCGTTCTCGAGGTACGGAGGAGGCTAGGATTACTTGGG
CGGCGAGCGCTGTTTTCTTTGTTTCATCGTTGTTGCAGCTTTAGAAACAG
CGTTGGATTGGATAGGTGCCTGGCGTGATGGCCTCTTCTTTTCCCCTGGC
ACGCACCCACCCACACACACAAAACCCTCCTCGCTGTTATTATTTTTTTC
TCAATCGTCTCCAGTGCTTGCGCGTCGTACGAACGAGCATCACCCGATCG
AATGTCGGAGATGCCCGTAGCACTGCCTGGTGCGAATTTCTGGTGCCCCA
CCAATATGTCGGGGGATGAGATAGCGCTGTACACAATTTTGGTAGATGGA
CGCGAAAACATGGTCGTTAGTTTTGGCAGGTCAGACCCAACGTTAAAGAA
ACGGTGGCGACCAATGCGGACAAGAAGCGTTAGGGGATAAGTTGAGCAAA
GGGTTCTCTTTCCGAACATGCAATTCAAATAAATAGAGGCGCCCGATAAA
GAGAGGCCTTGGCATCACCTCGATTCGGAGTAGAGGCGGAGAGTGTTTCG
TCTCCTGAAGTGGGGCGTGGTCAAAAGTCAAGCGAATCAAGGTGAGCAAA
AACCAAGTCCGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCGCTTTTTTTTTTTTTTTTGGGGGGGGG
GTGTTGGGGGGTGGGGGGGGGGGGNNNNNNNNNNGTGGGGCGTGGTCAAA
AGTCAAGCAAATCAAGGTGAGCAAAAACCAAGTCCGCCCCCCCCCCCTCC
CCCCCCCCCGGCCCCATCACTATTTGCGTCCCACCCATCGACGGTCTTTC
TTTGTAGGGCTGCCACCGCCACGGGAGTGGAAGGCGTTTTCGGGGTGCGG
GGATGGCAGCGCACGCAGGACGCGCCCCGGCCGAAGCGGCAACGCCGTGG
TCTGCTTGTACAGTCAGGTGGGGAAGGAAACACAAACACAAACACAAACA
CAAACACAAACATAAACACACACACGGCACCATACATGATCGATCGGCTA
GACAAATCTCGTCAGATGTCTCGAGCCTGTCCTTCCGTCGACACGCTTTT
CTCTTGCTGTACCCCTCCTGTGTGACCCTGGATGGTTGTTGTTGTACGAA
AAAATGCACTGAAAAGTGTAGTACTCTACATACGCTGAAAAAGCGTAGTA
CACGTCTCATCACGAAAAATGAGGGGACTGTCGCCATGAAAATAGGACGA
AAACACACACACCCGGCGTCCGGTGGGCTGGTGGGATTGGTGGGAAGAAA
AGCCCCATTCTATCCGTTGACCCGCTTCTGTTGCTGAATCCGACGCCCGA
TGTTGGTGAGGGATTTGGTGGGGAAAAAAATGTCCCTCCCTGTCTCTGTC
ATCCGAAAGGGGGGGGGGGGTCGTATCGGCGTGATTCGACGGAGTCCCTA
AGCAGCAGCAATGTTGTCTGAAACCAAGTTTTTTATCTCTGGTTGTTGCT
TTTGGCGCAGGAGGTGTGGTCGGCGGGGAACCTAGACGCGACGTTCTCGA
ACCGGCACAACCCGACGGAGGACCGGAAGGCGAAACGGCGGGAGGGAGAG
GAAGGAGCCTTCTCAAGGCGTTCAAACGGACAGGACGAGACGAGAAGCCC
TGGCAGTTCGTGGGGGGAGCCGGTGCTGGGGCTGAAGCCGGCGCCGGTTT
GGCGGAGGTGGACGCTCTCACGGACGCTTTGTTCGTCAGAGGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13567:653..4545-

>mRNA_Ecto-sp13_S_contig13567.2831.1 ID=mRNA_Ecto-sp13_S_contig13567.2831.1|Name=mRNA_Ecto-sp13_S_contig13567.2831.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=993bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13567:653..4545- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGTCCCTCAGACGTTGATCAAGCCCGGGAATGCTTACCCCATAAA
GTCTCAAGACTGGGCCACACGCGTGTACGCGGCTAAGTCGGCCAAGAGCC
AGGCTTCCAAGGGAGCAGGACCGGAAGAGATCGGTCGGGCCGCGCTCTCG
AAGCGGTTGGCTGCGCGCCAGCAAGAGGGGCCGCGGGAAGAAAGCGGAGG
AACCGCTGCCGTTTTGACTCTCCTGGTGGCGGACGCCAAGAAGCCGCAAC
CGTTCCTGTCGGCTCTCGGGGGGAGACACAGCTGGGACCCCGAACATCGT
GCGACAACGGCGGCGGTAGGAGAGGGGGAAGCTGAGTGGGCTTGGGAAGA
GGTGTTCGTCTGCGAGGAGGACGAGGGCGCCCTGGACGGGATCTTGGGCT
CGCGGGGGGAGGGGGAGGCGTGGCGAGAGGCGCTCGAACGAGGGGCGGTC
AAGCTGGTACCCTGTGGCTCCGGCGGGGCGGACGAGAGGCGAGCCGGCGA
GCTGTCCGTCGCGTGCGCCGCCGGGGACTCGTCCGTGTCCGAGTTCGTGT
GGCTGCCTGGGCCGGGGGTGGCGGAGGCCCTGGGGATGGCGGACGCGAAG
CGGTCGACCCCGTCGGGCAGGGGTGCGGAGGTGTTGTCGGAGCTCTACAG
GGCTGCCACCGCCACGGGAGTGGAAGGCGTTTTCGGGGTGCGGGGATGGC
AGCGCACGCAGGACGCGCCCCGGCCGAAGCGGCAACGCCGTGGTCTGCTT
GTACAGTCAGGAGGTGTGGTCGGCGGGGAACCTAGACGCGACGTTCTCGA
ACCGGCACAACCCGACGGAGGACCGGAAGGCGAAACGGCGGGAGGGAGAG
GAAGGAGCCTTCTCAAGGCGTTCAAACGGACAGGACGAGACGAGAAGCCC
TGGCAGTTCGTGGGGGGAGCCGGTGCTGGGGCTGAAGCCGGCGCCGGTTT
GGCGGAGGTGGACGCTCTCACGGACGCTTTGTTCGTCAGAGGT
back to top