mRNA_Ecto-sp13_S_contig1356.2825.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1356.2825.1
Unique NamemRNA_Ecto-sp13_S_contig1356.2825.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1356.2825.1 vs. uniprot
Match: A0A6H5JU55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU55_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 2.980e-59
Identity = 97/100 (97.00%), Postives = 98/100 (98.00%), Query Frame = 2 
Query:    2 STSTCNCYV*AGDLAQQLDHDETEIRRILKDRRGEKRYHAYTIFLRSFGIIPKKHNMKDDWCLVGLGSLHLALEECHHREYVISAEPKGPMLSASTALKT 301
            STSTCNCYV AGDLAQ LDHDETEIRRILKDRRGEKRYHAYTIFLRSFGIIPKKHNMKDDWCL+GLGSLHLALEECHHREYVISAEPKGPMLSASTALKT
Sbjct:  249 STSTCNCYVGAGDLAQLLDHDETEIRRILKDRRGEKRYHAYTIFLRSFGIIPKKHNMKDDWCLLGLGSLHLALEECHHREYVISAEPKGPMLSASTALKT 348
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BLAST of mRNA_Ecto-sp13_S_contig1356.2825.1 vs. uniprot
Match: A0A6H5J8W1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8W1_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 6.090e-6
Identity = 23/68 (33.82%), Postives = 45/68 (66.18%), Query Frame = 2 
Query:    8 STCNCYV*AGDLAQQLDHDETEIRRILKDRRGE---KRYHAYTIFLRSFGIIPKKHNMKDDWCLVGLG 202
            +T NC++   DLA+ +D +  ++RRIL+    +   ++ H Y++FLR+ G+I +++  +  WCL+G+G
Sbjct:  230 NTHNCWMAVEDLAELIDENVEDVRRILRVGTAKIRRQKNHNYSLFLRAHGMIGREYRNRTHWCLLGVG 297
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1356.2825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JU55_9PHAE2.980e-5997.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8W1_9PHAE6.090e-633.82Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1356contigEcto-sp13_S_contig1356:6718..7174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size304
Hectar predicted targeting categoryother localisation
Exons2
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462724.275938-CDS-Ecto-sp13_S_contig1356:6717..67441681462724.275938-CDS-Ecto-sp13_S_contig1356:6717..6744Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1356 6718..6744 -
1681462724.2843003-CDS-Ecto-sp13_S_contig1356:6898..71741681462724.2843003-CDS-Ecto-sp13_S_contig1356:6898..7174Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1356 6899..7174 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1356.2825.1prot_Ecto-sp13_S_contig1356.2825.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1356 6718..7174 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1356.2825.1

>prot_Ecto-sp13_S_contig1356.2825.1 ID=prot_Ecto-sp13_S_contig1356.2825.1|Name=mRNA_Ecto-sp13_S_contig1356.2825.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
FDQYLQLLRLSGGSRPTTRSRRDGDQAYPEGQEGREAVSCLHHLPAIVWD
YSKKTQHEGRLVFGGTRVASSCPGGMPPQRIRDKRGAQGTYAIREHCVED
R
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mRNA from alignment at Ecto-sp13_S_contig1356:6718..7174-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1356.2825.1 ID=mRNA_Ecto-sp13_S_contig1356.2825.1|Name=mRNA_Ecto-sp13_S_contig1356.2825.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=457bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1356:6718..7174- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCGACCAGTACCTGCAACTGTTACGTTTGAGCGGGGGATCTCGCCCAAC
AACTCGATCACGACGAGACGGAGATCAGGCGTATCCTGAAGGACAGGAGG
GGCGAGAAGCGGTATCATGCCTACACCATCTTCCTGCGATCGTTTGGGAT
TATTCCAAAAAAACACAACATGAAGGACGACTGGTGTTTGGTGGGACTCG
GGTCGCTTCATCTTGCCCTGGAGGAATGCCACCACAGAGAATACGTGATA
AGCGCGGAGCCCAAGGGACCTATGCTGTGAGTCCGACGGCATAACCGACA
GGAAAATGACAGCCCATGACAACAAAAACAAAACGATACAGAGCCTGCTT
ACACTAGTATCCCTTTCACTGACATTGCGTGCATCTGTCGTCGTCGATTT
ACATTCGGTTATCGTCTTTCGTCTGGACAGATCCGCGAGCACTGCGTTGA
AGACCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1356:6718..7174-

>mRNA_Ecto-sp13_S_contig1356.2825.1 ID=mRNA_Ecto-sp13_S_contig1356.2825.1|Name=mRNA_Ecto-sp13_S_contig1356.2825.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1356:6718..7174- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCGACCAGTACCTGCAACTGTTACGTTTGAGCGGGGGATCTCGCCCAAC
AACTCGATCACGACGAGACGGAGATCAGGCGTATCCTGAAGGACAGGAGG
GGCGAGAAGCGGTATCATGCCTACACCATCTTCCTGCGATCGTTTGGGAT
TATTCCAAAAAAACACAACATGAAGGACGACTGGTGTTTGGTGGGACTCG
GGTCGCTTCATCTTGCCCTGGAGGAATGCCACCACAGAGAATACGTGATA
AGCGCGGAGCCCAAGGGACCTATGCTATCCGCGAGCACTGCGTTGAAGAC
CGC
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