mRNA_Ecto-sp13_S_contig1356.2823.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1356.2823.1
Unique NamemRNA_Ecto-sp13_S_contig1356.2823.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1356.2823.1 vs. uniprot
Match: A0A6H5KHG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG3_9PHAE)

HSP 1 Score: 357 bits (916), Expect = 2.490e-119
Identity = 179/183 (97.81%), Postives = 179/183 (97.81%), Query Frame = 3 
Query:  258 MTARPDGAAEEGGEDTLFDDPVEVVGEELEGLLRLSPPSTSSTPVLAIITQHAIDSPETIRDFIEETAARLAKESGCQHEAPLVTWKQDREAATTCGRLQAGVLSRVNMQKVLDRQMTHDGDPGYCLAKRVRNQVYYDTSIDLDCHGKGNQCSAGTCMKAALQVFAGEARDGIPSEIVRAMCK 806
            MTARPDGAAEEGGEDTLFDDPVEVVGEELEGLLRLSPPSTSSTPVLAIITQHAIDSPETIRDFIEETAARLAKESGCQHEAPLVTWKQDREAATTCGRLQAGVLSR    KVLDRQMTHDGDPGYCLAKRVRNQVYYDTSIDLDCHGKGNQCSAGTCMKAALQVFAGEARDGIPSEIVRAMCK
Sbjct:    1 MTARPDGAAEEGGEDTLFDDPVEVVGEELEGLLRLSPPSTSSTPVLAIITQHAIDSPETIRDFIEETAARLAKESGCQHEAPLVTWKQDREAATTCGRLQAGVLSR----KVLDRQMTHDGDPGYCLAKRVRNQVYYDTSIDLDCHGKGNQCSAGTCMKAALQVFAGEARDGIPSEIVRAMCK 179
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BLAST of mRNA_Ecto-sp13_S_contig1356.2823.1 vs. uniprot
Match: A0A6H5KG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG83_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 1.440e-44
Identity = 93/186 (50.00%), Postives = 118/186 (63.44%), Query Frame = 3 
Query:  258 MTARPDGAAEEGGEDTLFDDPVEVVGEELEGLLRLSPPSTSSTPVLAIITQHAIDSPETIRDFIEETAARLAKESGCQHEAPLVTWKQDREAATTCGRLQAG--VLSRVNMQKVLDRQMTHDGDPGYCLAKRVRNQVYYDTSIDLDCHGKGNQCSAGTCMKAALQVFAGEARDGIPSEIVRAMCKY 809
            MTA   GA  EG  D LFD PV+  GE   GL+R+ PPS SS      I QHA   PETI  FI++ A  LA E  C H  P V+W++D  + T+CG  Q+   VL+ V +Q V  R   +  DPGYC+AKRVRNQ YYDT+ DL C G+GNQ  AG CM AA +VFAG+  DG+P+E+V+AM ++
Sbjct:    1 MTAPSRGAVAEGEYDPLFDSPVDA-GELCSGLVRVEPPSLSSEDTAVAILQHARLHPETIGSFIQKKAEELA-EGVCDHHQPPVSWQED-PSTTSCGLHQSASAVLAAVRLQDVFTR---YKDDPGYCVAKRVRNQGYYDTAKDLGCFGRGNQLKAGECMCAATKVFAGDGNDGLPTEVVKAMLQH 180
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BLAST of mRNA_Ecto-sp13_S_contig1356.2823.1 vs. uniprot
Match: D7G5X1_ECTSI (Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5X1_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 6.350e-28
Identity = 51/75 (68.00%), Postives = 62/75 (82.67%), Query Frame = 3 
Query:  582 MQKVLDRQMTHDGDPGYCLAKRVRNQVYYDTSIDLDCHGKGNQCSAGTCMKAALQVFAGEARDGIPSEIVRAMCK 806
            +QKVLDR+++ DGD GYCLAKRVR+QVYY  S DL C G GNQC+AG CM+AA QV+AG+  DG+P+E VRAMCK
Sbjct:   63 VQKVLDREVSRDGDAGYCLAKRVRHQVYYGASADLLCKGMGNQCTAGACMRAAAQVYAGDGTDGVPAETVRAMCK 137
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BLAST of mRNA_Ecto-sp13_S_contig1356.2823.1 vs. uniprot
Match: D7FZ39_ECTSI (M41 family endopeptidase FtsH/HflB n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ39_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.010e-26
Identity = 49/74 (66.22%), Postives = 59/74 (79.73%), Query Frame = 3 
Query:  585 QKVLDRQMTHDGDPGYCLAKRVRNQVYYDTSIDLDCHGKGNQCSAGTCMKAALQVFAGEARDGIPSEIVRAMCK 806
            QKVLDR+++ DGD GYCLAKR R+QVYY  S DL C G  NQC+AG CM+AA QV+AG+  DG+P+E VRAMCK
Sbjct:   25 QKVLDREVSRDGDAGYCLAKRARHQVYYGASADLLCKGMDNQCTAGACMRAAAQVYAGDGTDGVPAETVRAMCK 98
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BLAST of mRNA_Ecto-sp13_S_contig1356.2823.1 vs. uniprot
Match: A0A6H5JMB2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB2_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.740e-25
Identity = 49/70 (70.00%), Postives = 55/70 (78.57%), Query Frame = 3 
Query:  600 RQMTHDGDPGYCLAKRVRNQVYYDTSIDLDCHGKGNQCSAGTCMKAALQVFAGEARDGIPSEIVRAMCKY 809
            RQ+  DGDPGYCLAKRVRNQVYYDT  DL   G GNQC+A  CM AAL+VF+G+   GIP+EIVRAMC Y
Sbjct:    9 RQLKLDGDPGYCLAKRVRNQVYYDTPTDLLAKGAGNQCTAAECMVAALKVFSGKGNKGIPTEIVRAMCMY 78
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BLAST of mRNA_Ecto-sp13_S_contig1356.2823.1 vs. uniprot
Match: A0A6H5KBF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF5_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 6.670e-25
Identity = 47/73 (64.38%), Postives = 56/73 (76.71%), Query Frame = 3 
Query:  588 KVLDRQMTHDGDPGYCLAKRVRNQVYYDTSIDLDCHGKGNQCSAGTCMKAALQVFAGEARDGIPSEIVRAMCK 806
            KVLDRQ++ DGD GYCLA RVR QVYY+ S DL C G  NQC+AG CM+AA QV+  +  DG+P+E VRAMCK
Sbjct:    2 KVLDRQVSRDGDAGYCLANRVRYQVYYEASADLLCKGMDNQCTAGACMRAAAQVYVEDGTDGVPAETVRAMCK 74
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BLAST of mRNA_Ecto-sp13_S_contig1356.2823.1 vs. uniprot
Match: A0A6H5KKJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ8_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 9.110e-23
Identity = 42/63 (66.67%), Postives = 53/63 (84.13%), Query Frame = 3 
Query:  621 DPGYCLAKRVRNQVYYDTSIDLDCHGKGNQCSAGTCMKAALQVFAGEARDGIPSEIVRAMCKY 809
            DPGYC+AKRVRNQVYYDT+ DL C G+GNQ  AG CM+AA +VFAG+  DG+P+E+V+AM +Y
Sbjct:   27 DPGYCVAKRVRNQVYYDTAKDLGCFGRGNQLKAGECMRAATKVFAGDGNDGLPTEVVKAMLQY 89
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1356.2823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KHG3_9PHAE2.490e-11997.81Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG83_9PHAE1.440e-4450.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5X1_ECTSI6.350e-2868.00Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus silicul... [more]
D7FZ39_ECTSI1.010e-2666.22M41 family endopeptidase FtsH/HflB n=1 Tax=Ectocar... [more]
A0A6H5JMB2_9PHAE2.740e-2570.00Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBF5_9PHAE6.670e-2564.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKJ8_9PHAE9.110e-2366.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1356contigEcto-sp13_S_contig1356:3248..5354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1422
Hectar predicted targeting categoryother localisation
Exons2
Cds size555
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462724.3357773-UTR-Ecto-sp13_S_contig1356:3247..35041681462724.3357773-UTR-Ecto-sp13_S_contig1356:3247..3504Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1356 3248..3504 +
1681462724.3650084-UTR-Ecto-sp13_S_contig1356:4744..53541681462724.3650084-UTR-Ecto-sp13_S_contig1356:4744..5354Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1356 4745..5354 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462724.3478472-CDS-Ecto-sp13_S_contig1356:3504..38341681462724.3478472-CDS-Ecto-sp13_S_contig1356:3504..3834Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1356 3505..3834 +
1681462724.3563592-CDS-Ecto-sp13_S_contig1356:4519..47441681462724.3563592-CDS-Ecto-sp13_S_contig1356:4519..4744Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1356 4520..4744 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1356.2823.1prot_Ecto-sp13_S_contig1356.2823.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1356 3505..4744 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1356.2823.1

>prot_Ecto-sp13_S_contig1356.2823.1 ID=prot_Ecto-sp13_S_contig1356.2823.1|Name=mRNA_Ecto-sp13_S_contig1356.2823.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=185bp
MTARPDGAAEEGGEDTLFDDPVEVVGEELEGLLRLSPPSTSSTPVLAIIT
QHAIDSPETIRDFIEETAARLAKESGCQHEAPLVTWKQDREAATTCGRLQ
AGVLSRVNMQKVLDRQMTHDGDPGYCLAKRVRNQVYYDTSIDLDCHGKGN
QCSAGTCMKAALQVFAGEARDGIPSEIVRAMCKY*
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mRNA from alignment at Ecto-sp13_S_contig1356:3248..5354+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1356.2823.1 ID=mRNA_Ecto-sp13_S_contig1356.2823.1|Name=mRNA_Ecto-sp13_S_contig1356.2823.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2107bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1356:3248..5354+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCACAGCCCCCATATAGCCGCGACGGGGACACTAGACCACCCACTTGC
ACACCAGCACTAGGCAGATGGAAGGTGTGGAGATCCCCGCAGCGAAACGG
GCCCGCAAGTCCATGGACGCGAGGCAGACACCCGACAAATCGGAGTCAGA
GCGCGGCGGCAGAACAGCCTCCTCAGCTGCTACAACAGCAGCAGCAGCAG
CAAGTTGGGTCCCAAGACAACACAGCAGTGCCAGCAGCGGGCGGGGCGTC
ACGTTCCATGACCGCCCGGCCTGACGGGGCTGCGGAGGAGGGCGGGGAGG
ATACGCTTTTCGATGACCCCGTGGAGGTGGTCGGCGAAGAGCTCGAAGGT
TTACTGCGGCTCTCCCCCCCAAGCACGTCCAGCACGCCCGTGTTGGCCAT
CATCACGCAGCACGCGATCGACTCGCCAGAGACGATCCGCGATTTTATTG
AAGAGACAGCAGCCAGGCTGGCGAAGGAGTCGGGATGCCAGCATGAGGCA
CCGCTTGTGACTTGGAAGCAGGATCGGGAAGCAGCTACGACGTGCGGGCG
CCTCCAGGCTGGTGTCCTCAGCCGGGTGAACATGCAGGCGAGCGCCCACG
CAACTTCCGATAGTAGCGGTTACTGCTGTGGAACTATCCAACGAAGCAGA
GATGCCGTATGCATACGTACTGGCGAGTCGAGGGCCACTGTCGACCTCGG
GTATTACGATTACAAGAGGTATCTGGGCCAAGTGCTTTCCATACTATGTA
ACCCGAGTGGATTTGCTAAGGGAAACAGTATGGACGACAGCAGCGTTATT
TGTAGGACAAACGTTACGTAAGATACCACACCCCCTGGATCGATTTGCAA
AGCTCGATTAGCCCAAGACGAGGAGGAGGTACTCTCCAAACGAAATTTTT
TACGAAGTCCTCTACAGGTAGCGGATCCAGCGCAGCCGCCTTCGGCACCG
CCACACTTTCTGCTGCTTTAGAAATATGCGTTATTTCTATATCGACCCGA
CTTCGCGTAAGATACCACACCAAGTATTTGCAAAGCTCAAAAGCCCGTGA
CCAGGAGGAGGCATTCCCTTATCGCAATTTTTTTTTAAGTCCTCGGCAGG
TAGCAGATCCAGTGCAGCCGCCTTCGGCACCGCCGCACTTGCTGCTGCTT
TGGAATTATATGTTATTTATGTGTGCATCTGGCGACATCGTTTACATACC
CTAGCCTAACACCTGGCAGAACGGCTAAAACACACCAGTTTACCCCATTT
ATTCCGTGCGAATGTTCCGCAGAAAGTACTGGACCGCCAGATGACACACG
ACGGCGACCCTGGATATTGTCTGGCCAAGAGGGTCCGCAACCAGGTGTAT
TACGACACCTCGATTGATCTCGACTGCCACGGCAAAGGCAACCAGTGTTC
GGCGGGTACCTGCATGAAGGCCGCCTTACAGGTCTTCGCCGGAGAAGCAC
GCGACGGCATCCCGTCGGAGATTGTGCGTGCCATGTGCAAGTACTAGTCT
GTGCTTGTCGAACGGGGTACGGGGACGTCTCGCGTTCCAAGTTTGTAGAG
GACCACGGACATCAGTGGAGTAGTGTTACTCGGATGTGGGGGCGTTCGGC
TCCAGACGACCTACCTTGGCTATTATGCTCTCTTCGAGCGTACTGTTGTG
TTGTGTGGCCTCTGAACCCGAGTGGGGCGGGAAGGGTTCGGTTTCGGTTA
ACCCTACATGCCGCATGTTCAGCGTTGGTACGTAGGGACTCGGGACAGCG
TCTCGGACACTCCAGAGCCGGTGGCTTATTTATTTTGTACCGGGCCCGTA
GACGAGAGGCGTAAACATTGTATCGTCTAATCACTAATATACCCAAAAAA
ATAATTTTGGGTGTGTGCCAACCTGCGCACATAGCTTTGGGCGTGGTGTA
TCGTGTTCCGTTCATTTTTTTGTCTTTGGGTACATTGGGTTTAGTCTGGA
TGAGTGTTTTCGTAGGAACAGATGGGAGGATGGGAGGTACGTGAGGAAAT
TCGGCGGCCCCGGGAGACCAAAACAGCACACAACACTGTGGCGCTTTAAT
CGTGGTGGCACTTTCCGTCCTGTGCATTCCATGTCGTCGCGTTTTTTTCG
ACCAGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1356:3248..5354+

>mRNA_Ecto-sp13_S_contig1356.2823.1 ID=mRNA_Ecto-sp13_S_contig1356.2823.1|Name=mRNA_Ecto-sp13_S_contig1356.2823.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1356:3248..5354+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCGCCCGGCCTGACGGGGCTGCGGAGGAGGGCGGGGAGGATACGCT
TTTCGATGACCCCGTGGAGGTGGTCGGCGAAGAGCTCGAAGGTTTACTGC
GGCTCTCCCCCCCAAGCACGTCCAGCACGCCCGTGTTGGCCATCATCACG
CAGCACGCGATCGACTCGCCAGAGACGATCCGCGATTTTATTGAAGAGAC
AGCAGCCAGGCTGGCGAAGGAGTCGGGATGCCAGCATGAGGCACCGCTTG
TGACTTGGAAGCAGGATCGGGAAGCAGCTACGACGTGCGGGCGCCTCCAG
GCTGGTGTCCTCAGCCGGGTGAACATGCAGAAAGTACTGGACCGCCAGAT
GACACACGACGGCGACCCTGGATATTGTCTGGCCAAGAGGGTCCGCAACC
AGGTGTATTACGACACCTCGATTGATCTCGACTGCCACGGCAAAGGCAAC
CAGTGTTCGGCGGGTACCTGCATGAAGGCCGCCTTACAGGTCTTCGCCGG
AGAAGCACGCGACGGCATCCCGTCGGAGATTGTGCGTGCCATGTGCAAGT
ACTAG
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