mRNA_Ecto-sp13_S_contig13552.2819.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13552.2819.1 vs. uniprot
Match: A0A6H5JSG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG4_9PHAE) HSP 1 Score: 196 bits (497), Expect = 2.680e-55 Identity = 140/349 (40.11%), Postives = 179/349 (51.29%), Query Frame = 3
Query: 72 ESFDLCQQSAFLSSDVTF*GESVVDSVVETQYSNCVGFDLSILG-----ESSEEAVIDVAWIVSDTASTEENYLNNVAITIEDIDAAASGDEP----FSLFYVPFTRYALGDDQVPYSMTEVKIGKTTKKSLNGDVATNYPPLLLSTFDFIATDTDFTSSHYSCYTDDASVTSAAPDLAFGRLLLRIRQGPFSLTHIKELSPFDFGAFLGNMGGFWELLIVVWAILFITVDEQRTPKLKVRDFIKTFQANKIIVKRPRSRSVDSADFPAGARESPDWESAFRGDNSASAPPALPPRGLGSARPVGLPTSAAHTSIRGHPQQNSTSSPHFGNDP-SFRRPVVFDVPRRDF 1088
E + C A S V VD V+ET++ CVGFDL+ L S A I + W+ SDTA T Y VA+T A+AS D P S YVP+ RY D + ++ IGKTTKK L+G T +P L +ST + +T SS Y+ Y A G L L +RQGPFSLT ++E+SP D G+F GN+GGFWELL+V+W +LF + RTP+L+ R+FI Q K IV R RS SVDS E P S F G++ PPALPPR G G ++A ST SP + P S +RPVV DVPRR +
Sbjct: 4 EGVETCVDYALNYSTVYDHNNEEVDLVIETKHDECVGFDLTKLDVDGVPSSDLRATISMNWLASDTADTATIYTEQVAVT-----ASASDDLPEVEDISFVYVPYDRYTTADPIDELNTVDLTIGKTTKKMLDGSSTTVFPALTISTTTTVIQETSLPSSTYAEY-------------ALGYLKLMVRQGPFSLTSVEEVSPLDVGSFFGNLGGFWELLLVLWGLLFFATRQDRTPQLRARNFI---QPLKEIVARRRSLSVDSGASIVQPEELPQERSFFGGNH----PPALPPRPRGGNTMPGGRSTAVGV---------STMSPATLSSPVSSQRPVVEDVPRRGW 318
BLAST of mRNA_Ecto-sp13_S_contig13552.2819.1 vs. uniprot
Match: D7FTW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW4_ECTSI) HSP 1 Score: 104 bits (260), Expect = 1.450e-22 Identity = 82/223 (36.77%), Postives = 103/223 (46.19%), Query Frame = 3
Query: 36 VMVCFSPGQGCG---ESFDLCQQSAFL-SSDVTF*GESVVDSVVETQYSNCVGFDLSILGESSEEAVIDVAWIVSDTASTEENYLNNVAITIEDIDAAASGDEPFSLFYVPFTRYALGDDQVPYSMTEVKIGKTTKKSLNGDVATNYPPLLLSTFDFIATDTDFTSSHYSCYTDDASVTSAAPDLAFGRLLLRIRQGPFSLTHIKELSPFDFGAFLGNMGGFW 692
V+VCF G+GCG ES D+C +A S+ V+F GE D T+ SNCVGFDL L E ++ + + DT IGKTTKK LNGDV T +PPL+LS+ DF A +T TS DD+ D +FGRL L I+QG +S T I E+ P D G FLGN+GGFW
Sbjct: 44 VLVCFFHGEGCGFEDESVDVCVTTALSESTTVSFNGEYYDDLGAVTE-SNCVGFDLGSL-EFGDDITAENDQAIIDT-----------------------------------------------------IGKTTKKKLNGDVTTTFPPLVLSSSDFTAENTWATSE------DDSF-----QDASFGRLYLDIKQGDYSRTAIAEVDPLDIGTFLGNIGGFW 200
BLAST of mRNA_Ecto-sp13_S_contig13552.2819.1 vs. uniprot
Match: A0A6H5JND4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JND4_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 6.810e-9 Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 3
Query: 597 LRIRQGPFSLTHIKELSPFDFGAFLGNMGGFWELLIVVWAILFITVDEQRTPKLKVRDFIKTFQ 788
LRI+QGP SL I E SP G LG++GGFW++L+++W + F+ V +Q P LK RDF K+ Q
Sbjct: 279 LRIKQGPNSLEFITEDSPVSIGELLGDIGGFWDVLLLLWPVFFVVVSQQ-DPTLKPRDFRKSLQ 341
BLAST of mRNA_Ecto-sp13_S_contig13552.2819.1 vs. uniprot
Match: D8LMD2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD2_ECTSI) HSP 1 Score: 67.4 bits (163), Expect = 1.400e-8 Identity = 40/113 (35.40%), Postives = 57/113 (50.44%), Query Frame = 3
Query: 561 SAAPDLAFGRLLLRIRQGPFSLTHIKELSPFDFGAFLGNMGGFWELLIVVWAILFITVDEQRTPKLKVRDFIKT-------FQANKIIVKRPRSRSVDSADFPAGARESPDWE 878
+AA D + +L L+ +Q P SL I E PFD GN+GGFW+LL++VW I F+ Q P LK R+F K+ + +++ R D + P E P WE
Sbjct: 244 NAAIDKPYAQLSLQFQQEPNSLEVITENDPFDLAEMFGNVGGFWDLLMLVWPIFFVAASRQ-DPHLKPRNFKKSVAKGLEGLRIGELVTAGTRK---DGSSNPEDEEEKPHWE 352
BLAST of mRNA_Ecto-sp13_S_contig13552.2819.1 vs. uniprot
Match: D7G5W1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5W1_ECTSI) HSP 1 Score: 65.5 bits (158), Expect = 2.670e-8 Identity = 38/132 (28.79%), Postives = 69/132 (52.27%), Query Frame = 3
Query: 393 YSMTEVKIGKTTKKSLNGDVATNYPPLLLSTFDFIATDTDFTSSHYSCYTDDASVTSAAPDLAFGRLLLRIRQGPFSLTHIKELSPFDFGAFLGNMGGFWELLIVVWAILFITVDEQRTPKLKVRDFIKTFQ 788
+ T++ + T K L+G +Y + ++ +++ +++S AF + LRI+QGP SL I E +P G LG++GGFW++L+++W + F+ V ++ P LK R+F K+ Q
Sbjct: 84 HMFTDIALALTETKKLDGTTERSYRADTIYSYPYVSDQVG------------ENISSITRPYAF--IDLRIKQGPNSLETITEDAPVTIGELLGDIGGFWDILLLLWPVFFVVVSQEE-PTLKPRNFRKSLQ 200
BLAST of mRNA_Ecto-sp13_S_contig13552.2819.1 vs. uniprot
Match: A0A6H5JF84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF84_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 5.410e-8 Identity = 38/126 (30.16%), Postives = 61/126 (48.41%), Query Frame = 3
Query: 408 VKIGKTTKKSLNGDVATNYPPLLLSTFDFIATDTDFTSSHYSCYTDDASVTSAAPDLAFGRLLLRIRQGPFSLTHIKELSPFDFGAFLGNMGGFWELLIVVWAILFITVDEQRTPKLKVRDFIKTF 785
V IG T + GD+ ++Y + +++ Y D A P + RL + ++Q S I E PF+F LGN+GGFW+L++++W + F+ Q P LK R+F K+F
Sbjct: 47 VGIGLTNQIKYTGDIISSYKAVSINS---------------GVYKDQADGDITKP---YARLSMELKQQFDSWEIITEADPFEFAEILGNIGGFWDLILILWPLFFVAAS-QPEPNLKPRNFAKSF 153
BLAST of mRNA_Ecto-sp13_S_contig13552.2819.1 vs. uniprot
Match: A0A6H5K6D1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6D1_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 6.290e-8 Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 3
Query: 561 SAAPDLAFGRLLLRIRQGPFSLTHIKELSPFDFGAFLGNMGGFWELLIVVWAILFITVDEQRTPKLKVRDFIKT 782
+AA D + +L L+ +Q P SL I E PFD GN+GGFW+LL++VW I F+ Q P LK R+F K+
Sbjct: 201 NAAIDKPYAQLSLQFQQEPNSLEVITENDPFDLAEMFGNVGGFWDLLMLVWPIFFVAASRQ-DPHLKPRNFKKS 273
BLAST of mRNA_Ecto-sp13_S_contig13552.2819.1 vs. uniprot
Match: A0A6H5K474_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K474_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 9.130e-8 Identity = 46/143 (32.17%), Postives = 66/143 (46.15%), Query Frame = 3
Query: 384 QVPYSM----------TEVKIGKTTKKSLNGDVATNYPPLLLSTFDFIATDTDFTSSHYSCYTDDASVTSAAPDLAFGRLLLRIRQGPFSLTHIKELSPFDFGAFLGNMGGFWELLIVVWAILFITVDEQRTPKLKVRDFIKT 782
QVPYS T V IG TT+ L + N L +ST + D+ + P + +L L+++Q P SL I E+ P D GN+GGFW+LL+++W I F+ Q P LK R+F K+
Sbjct: 232 QVPYSCITNVSSSHSHTYVGIGVTTEDKLGQEPIVNNKALSVST---------------ATVKDEVNPAIVKP---YAQLSLQVQQEPNSLEVITEVDPLDLAEMFGNVGGFWDLLMIMWPIFFVAASRQ-DPHLKPRNFKKS 355
BLAST of mRNA_Ecto-sp13_S_contig13552.2819.1 vs. uniprot
Match: D7FU23_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU23_ECTSI) HSP 1 Score: 63.2 bits (152), Expect = 4.440e-7 Identity = 40/124 (32.26%), Postives = 63/124 (50.81%), Query Frame = 3
Query: 552 SVTSAAPDLAFGRLLLRIRQGPFSLTHIKELSPFDFGAFLGNMGGFWELLIVVWAILFITVDEQRTPKLKVRDFIKTF-QANKIIVKRPRSRSVDSADFPAGARESPDWESAFRGDNSASAPPA 920
++T A A+ L + I Q SL I E++P + GN+GGFW+LL+++W I FI+ Q P LKVR+F K+ + ++++V R + S + P R P + PPA
Sbjct: 241 NITGIASPYAW--LSMEIAQTTDSLEEITEINPLEIAELFGNVGGFWDLLLMLWPIFFISASRQ-DPHLKVRNFKKSVTRGSEVVVDLSRRVNSASIEIPHPLRRQPGSRQSNATGEDGEPPPA 361
BLAST of mRNA_Ecto-sp13_S_contig13552.2819.1 vs. uniprot
Match: D8LMD1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD1_ECTSI) HSP 1 Score: 62.8 bits (151), Expect = 5.500e-7 Identity = 45/143 (31.47%), Postives = 64/143 (44.76%), Query Frame = 3
Query: 384 QVPYS----------MTEVKIGKTTKKSLNGDVATNYPPLLLSTFDFIATDTDFTSSHYSCYTDDASVTSAAPDLAFGRLLLRIRQGPFSLTHIKELSPFDFGAFLGNMGGFWELLIVVWAILFITVDEQRTPKLKVRDFIKT 782
QVPYS T V IG T + L + N L +ST + D+ + P + +L L+ +Q P SL I E+ P D GN+GGFW+LL+++W I F+ Q P LK R+F K+
Sbjct: 264 QVPYSCITNVSSSHSFTYVGIGVTIEDKLGQEPIVNNKALSVST---------------ATVKDEVNPAIVKP---YAQLSLQFQQEPNSLEIITEVDPLDLAEMFGNVGGFWDLLMIMWPIFFVAASRQ-DPHLKPRNFTKS 387 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13552.2819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13552.2819.1 >prot_Ecto-sp13_S_contig13552.2819.1 ID=prot_Ecto-sp13_S_contig13552.2819.1|Name=mRNA_Ecto-sp13_S_contig13552.2819.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=247bp MTEVKIGKTTKKSLNGDVATNYPPLLLSTFDFIATDTDFTSSHYSCYTDDback to top mRNA from alignment at Ecto-sp13_S_contig13552:639..4550- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13552.2819.1 ID=mRNA_Ecto-sp13_S_contig13552.2819.1|Name=mRNA_Ecto-sp13_S_contig13552.2819.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3912bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13552:639..4550- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13552:639..4550- >mRNA_Ecto-sp13_S_contig13552.2819.1 ID=mRNA_Ecto-sp13_S_contig13552.2819.1|Name=mRNA_Ecto-sp13_S_contig13552.2819.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=741bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13552:639..4550- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |