mRNA_Ecto-sp13_S_contig1355.2817.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1355.2817.1 vs. uniprot
Match: D8LEU3_ECTSI (Trafficking protein particle complex subunit 2-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEU3_ECTSI) HSP 1 Score: 301 bits (772), Expect = 1.010e-103 Identity = 148/149 (99.33%), Postives = 149/149 (100.00%), Query Frame = 1
Query: 1 MIVCIAIIGRQNEPLFLRTYTDAEGEEEEDANLRLHNIVHSSLDVIGERKVGRKGASGAADVSTDMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVNDIREPELKRVFSTVHNFYVNYLRNPFSPLAKPVDSAKFRLSVDRQINDYNS 447
MIVCIAIIGRQNEPLFLRTYTDAEGEEEEDANLRLHNIVHSSLDV+GERKVGRKGASGAADVSTDMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVNDIREPELKRVFSTVHNFYVNYLRNPFSPLAKPVDSAKFRLSVDRQINDYNS
Sbjct: 1 MIVCIAIIGRQNEPLFLRTYTDAEGEEEEDANLRLHNIVHSSLDVVGERKVGRKGASGAADVSTDMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVNDIREPELKRVFSTVHNFYVNYLRNPFSPLAKPVDSAKFRLSVDRQINDYNS 149
BLAST of mRNA_Ecto-sp13_S_contig1355.2817.1 vs. uniprot
Match: A0A836CHF0_9STRA (Trafficking protein particle complex subunit 2-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF0_9STRA) HSP 1 Score: 169 bits (427), Expect = 4.570e-51 Identity = 79/153 (51.63%), Postives = 108/153 (70.59%), Query Frame = 1
Query: 1 MIVCIAIIGRQNEPLFLRTYTDAE-GEEEEDANLRLHNIVHSSLDVIGERKVGRKGASGA---ADVSTDMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVNDIREPELKRVFSTVHNFYVNYLRNPFSPLAKPVDSAKFRLSVDRQINDYNS 447
MIVC+A+I + N PL +RTY D GE++ D +R H+IVH+SLDV+ E + G + + DMFLGHLCP+DEY VYGY+TST++K+LAVLE+ R+ EL + T+H FYVNY NPFSPL +P+ S +F+L+VDRQ+N YN+
Sbjct: 1 MIVCLAVISKANAPLLVRTYVDPSLGEDQADTTIRFHHIVHTSLDVVQEARAGDRHVPACRRWCAATRDMFLGHLCPMDEYEVYGYVTSTQVKILAVLEETVTSRKSELAALLHTIHGFYVNYQLNPFSPLNQPIGSERFKLAVDRQVNGYNA 153
BLAST of mRNA_Ecto-sp13_S_contig1355.2817.1 vs. uniprot
Match: W7T3S0_9STRA (Trafficking protein particle complex subunit 2-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T3S0_9STRA) HSP 1 Score: 135 bits (341), Expect = 1.510e-37 Identity = 71/152 (46.71%), Postives = 99/152 (65.13%), Query Frame = 1
Query: 1 MIVCIAIIGRQNEPLFLRTYTDAEGEEEEDANLRLHNIVHSSLDVIGERKVG---RKGASGAADVST-DMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVNDIREPELKRVFSTVHNFYVNYLRNPFSPLAKPVDSAKFRLSVDRQINDYN 444
MI CIA++G++NE L+L+ + A+ + D L H I HS+LD ER R S + ST DMFLG+LCPI+E+RVYGY TST++K LA+L + N +RE +LK VF +H YV+YL++PFSPL + S +F V+RQ+ YN
Sbjct: 1 MIACIAVVGKKNELLYLKPFL-AQPDASSDYFLSFHFIAHSALDAFDERSKSVSRRPSPSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSVFQGLHILYVSYLQSPFSPLTGKITSERFSKGVERQVVVYN 151
BLAST of mRNA_Ecto-sp13_S_contig1355.2817.1 vs. uniprot
Match: A0A8K1FMJ4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMJ4_PYTOL) HSP 1 Score: 125 bits (314), Expect = 3.820e-34 Identity = 69/149 (46.31%), Postives = 97/149 (65.10%), Query Frame = 1
Query: 1 MIVCIAIIGRQNEPLFLRTYTDAEGEEEEDANLRLHNIVHSSLDVIGERKVGRKGASGAADVSTDMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVNDIREPELKRVFSTVHNFYVNYLRNPFSPLAKPVDSAKFRLSVDRQINDYNS 447
MI C+A+IG N PLF+RT+ EED +L H I H +LD+I E KV +GAS A DM+LG L PI++YRVYGY+T+T +KL+A+LED + +RE EL+ FS +H YVN + NPF+P+ + + S +F V + +NS
Sbjct: 1 MISCVAVIGAANSPLFIRTF-------EEDEDLGFHYIAHVALDII-EEKV--RGASNIA-AKDDMYLGFLGPIEDYRVYGYVTNTSVKLVAILED-SPVRESELRSFFSELHKLYVNAVSNPFAPIGERITSQQFDKKVYNLVLQHNS 137
BLAST of mRNA_Ecto-sp13_S_contig1355.2817.1 vs. uniprot
Match: D0N1W2_PHYIT (Trafficking protein particle complex subunit 2-like protein n=6 Tax=Peronosporaceae TaxID=4777 RepID=D0N1W2_PHYIT) HSP 1 Score: 120 bits (300), Expect = 5.190e-32 Identity = 66/149 (44.30%), Postives = 91/149 (61.07%), Query Frame = 1
Query: 1 MIVCIAIIGRQNEPLFLRTYTDAEGEEEEDANLRLHNIVHSSLDVIGERKVGRKGASGAADVSTDMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVNDIREPELKRVFSTVHNFYVNYLRNPFSPLAKPVDSAKFRLSVDRQINDYNS 447
MI C+A+IG N PL++RT+ GEE ED L H I H SLDVI E+ G +G DM+LG L PI++YRVYGY+T+T +K + VL+D +RE EL+ F+ VH YVN + NPF+PL + + S F V + +N+
Sbjct: 1 MIACVAVIGAANSPLYIRTF----GEEGED--LGFHYIAHVSLDVIEEKLRG----AGITSSKDDMYLGFLGPIEDYRVYGYVTNTSVKFVVVLQDA-PVRESELRPFFAEVHRLYVNAMSNPFAPLGERLTSQTFDKRVSNLVVQHNT 138
BLAST of mRNA_Ecto-sp13_S_contig1355.2817.1 vs. uniprot
Match: K3WRF7_GLOUD (Trafficking protein particle complex subunit 2-like protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRF7_GLOUD) HSP 1 Score: 118 bits (295), Expect = 2.960e-31 Identity = 63/149 (42.28%), Postives = 94/149 (63.09%), Query Frame = 1
Query: 1 MIVCIAIIGRQNEPLFLRTYTDAEGEEEEDANLRLHNIVHSSLDVIGERKVGRKGASGAADVSTDMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVNDIREPELKRVFSTVHNFYVNYLRNPFSPLAKPVDSAKFRLSVDRQINDYNS 447
MI C+A+IG N PL++RT+ +EEED L H I H SLD+I E K+ G A D DM+LG L PI++YRVYGY+T+T +K +A+++D + +RE EL+ F+ +H YVN + NPF+P+ + + S F V + +N+
Sbjct: 1 MISCVAVIGAANSPLYVRTF-----DEEED--LGFHYIAHVSLDII-EEKLRSAGIMAAKD---DMYLGFLGPIEDYRVYGYVTNTSIKFVAIMQD-SPVRESELRSFFAEMHKMYVNAMSNPFAPIGERITSQNFEKKVYNLVLQHNT 137
BLAST of mRNA_Ecto-sp13_S_contig1355.2817.1 vs. uniprot
Match: A0A7S2WDT6_9STRA (Trafficking protein particle complex subunit 2-like protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WDT6_9STRA) HSP 1 Score: 117 bits (292), Expect = 2.030e-30 Identity = 58/154 (37.66%), Postives = 89/154 (57.79%), Query Frame = 1
Query: 4 IVCIAIIGRQNEPLFLRTYTDAEGE-------EEEDANLRLHNIVHSSLDVIGERKVGRKGASGAADVSTDMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVNDIRE--PELKRVFSTVHNFYVNYLRNPFSPLAKPVDSAKFRLSVDRQIND 438
I C++++GR NEPLF+R Y E E+DA LR H ++H+SLDV+ E+ + S A T MFLG+LCP+DE+ +YGY+T+T KL+ LED ++ +F +H+ + NPF+PL K V S F+ +D+ + +
Sbjct: 15 IACVSVVGRTNEPLFMRVYASEEAPFDALNPGSEQDA-LRFHYMIHASLDVVDEKHRPPRTESSPAPTKTSMFLGYLCPVDEFHLYGYVTNTHNKLIVALEDQAGTGGGIADMTGLFKRIHDLLIKQALNPFAPLGKVVASTNFQNGIDKLVQE 167
BLAST of mRNA_Ecto-sp13_S_contig1355.2817.1 vs. uniprot
Match: W4GM96_9STRA (Trafficking protein particle complex subunit 2-like protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GM96_9STRA) HSP 1 Score: 114 bits (285), Expect = 8.840e-30 Identity = 58/148 (39.19%), Postives = 89/148 (60.14%), Query Frame = 1
Query: 1 MIVCIAIIGRQNEPLFLRTYTDAEGEEEEDANLRLHNIVHSSLDVIGERKVGRKGASGAADVSTDMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVNDIREPELKRVFSTVHNFYVNYLRNPFSPLAKPVDSAKFRLSVDRQINDYN 444
MI C+AI+G N PLF+R Y ED +L H + H +LD++ ER K DM+LG L P++++RVYGY+T+T +KLLA+++D ++E +++ FS +HN YVN + NPF+ L + + SAKF V + +N
Sbjct: 1 MIACVAIVGANNNPLFVRAYA-------EDDDLSFHYVAHIALDIVEERVKQSKD---------DMYLGFLGPVEDFRVYGYVTNTLVKLLAIVQDT-PMKESDMRAFFSVMHNLYVNAMSNPFAVLGERIASAKFDRQVTSLVLQHN 131
BLAST of mRNA_Ecto-sp13_S_contig1355.2817.1 vs. uniprot
Match: A0A7S3U8L7_9SPIT (Trafficking protein particle complex subunit 2-like protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U8L7_9SPIT) HSP 1 Score: 113 bits (282), Expect = 3.440e-29 Identity = 58/145 (40.00%), Postives = 91/145 (62.76%), Query Frame = 1
Query: 1 MIVCIAIIGRQNEPLFLRTYTDAEGEEEEDANLRLHNIVHSSLDVIGERKVGRKGASGAADVSTDMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVNDIREPELKRVFSTVHNFYVNYLRNPFSPLAKPVDS-AKFRLSVDRQI 432
MIV +A++GR+N PL++R + E + A LR H IVH+++D I E+ K + G DM+LG L PI+EYRVYGYMT++R+KL+ VL+D ++++ E++ +F +H YV+ + NPF L ++ A F V R +
Sbjct: 1 MIVAVAVLGRENNPLYMRAF--GELSMDSTATLRFHFIVHAAIDYIEEKLGQAKTSPGNTAPKLDMYLGFLYPIEEYRVYGYMTNSRVKLITVLDD-EEVKDSEMRALFRRLHTLYVDTISNPFHKLDSELNGCASFEKQVGRVV 142
BLAST of mRNA_Ecto-sp13_S_contig1355.2817.1 vs. uniprot
Match: A0A0G4ISZ6_PLABS (Trafficking protein particle complex subunit 2-like protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4ISZ6_PLABS) HSP 1 Score: 112 bits (280), Expect = 9.120e-29 Identity = 57/151 (37.75%), Postives = 93/151 (61.59%), Query Frame = 1
Query: 1 MIVCIAIIGRQ--NEPLFLRTYTDAEGEEEEDANLRLHNIVHSSLDVIGERKVGRKGASGAADVSTDMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVNDIREPELKRVFSTVHNFYVNYLRNPFSPLAKPVDSAKFRLSVDRQINDYNS 447
+I C+A++G Q + PLF+R + + + L+ H VH ++D+I E+ +G S A D +LG+LCPIDEY+VYGYMT + +K + V++DV +R+ ++K +F +HN YV+ L NPF+ KP+ S +F VD+ I + +
Sbjct: 7 VIACLAVLGNQPTHNPLFVRVFGERDA-------LQFHYFVHCAVDIIEEKVQSSRGVSPAP---FDKYLGYLCPIDEYKVYGYMTVSDIKFIVVVQDVF-VRDSDMKGLFRWLHNLYVDTLMNPFAEPGKPITSRRFCGEVDKVIGSHEN 146 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1355.2817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1355.2817.1 >prot_Ecto-sp13_S_contig1355.2817.1 ID=prot_Ecto-sp13_S_contig1355.2817.1|Name=mRNA_Ecto-sp13_S_contig1355.2817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=150bp MIVCIAIIGRQNEPLFLRTYTDAEGEEEEDANLRLHNIVHSSLDVIGERKback to top mRNA from alignment at Ecto-sp13_S_contig1355:1854..3868- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1355.2817.1 ID=mRNA_Ecto-sp13_S_contig1355.2817.1|Name=mRNA_Ecto-sp13_S_contig1355.2817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2015bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1355:1854..3868- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1355:1854..3868- >mRNA_Ecto-sp13_S_contig1355.2817.1 ID=mRNA_Ecto-sp13_S_contig1355.2817.1|Name=mRNA_Ecto-sp13_S_contig1355.2817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=450bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1355:1854..3868- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |