mRNA_Ecto-sp13_S_contig13548.2816.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13548.2816.1 vs. uniprot
Match: D7G245_ECTSI (Rab18, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G245_ECTSI) HSP 1 Score: 240 bits (613), Expect = 3.380e-78 Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 1
Query: 1 VYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAKAEEYARSKGMLFLEASAKTKVGVKQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPNQAGGGLCCG 360
VYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRA+AEEYARSKGMLFLEASAKTKVGVKQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPNQAGGGLCCG
Sbjct: 91 VYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLEASAKTKVGVKQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPNQAGGGLCCG 210
BLAST of mRNA_Ecto-sp13_S_contig13548.2816.1 vs. uniprot
Match: A0A835YPZ0_9STRA (Rab18, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPZ0_9STRA) HSP 1 Score: 165 bits (418), Expect = 1.250e-48 Identity = 86/121 (71.07%), Postives = 99/121 (81.82%), Query Frame = 1
Query: 1 VYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAKAEEYARSKGMLFLEASAKTKVGVKQVFEEVVQKILDNPSLLANTAPGRPRDTVD--PSRPNPNQAGGGLCC 357
VYDV RPETFDNL+KWLEEVETYHPGRGR+VVKLLVGNKVD R V R +AE +ARSKGMLFLEASAKT+VG++Q FEEVV KIL++P+LLANT PG+PR TVD ++ P GG C
Sbjct: 89 VYDVERPETFDNLNKWLEEVETYHPGRGRDVVKLLVGNKVDCPRAVPREQAEAWARSKGMLFLEASAKTEVGIRQAFEEVVHKILESPALLANTTPGKPR-TVDLAATQNTPPSGAGGCGC 208
BLAST of mRNA_Ecto-sp13_S_contig13548.2816.1 vs. uniprot
Match: A0A4D9D7L4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7L4_9STRA) HSP 1 Score: 155 bits (392), Expect = 1.030e-44 Identity = 80/119 (67.23%), Postives = 94/119 (78.99%), Query Frame = 1
Query: 1 VYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAKAEEYARSKGMLFLEASAKTKVGVKQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPNQAGGGLCC 357
VYDV R E+F+NL+ WL+EVE Y G GRE+VK+LVGNKVDKER+V R +AE +ARSKGMLFLEASAKT+ G++QVF EVVQKILDNPSLL NTAPGRPR V+ + GG CC
Sbjct: 91 VYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGRPR--VNLQADAAAKGSGGYCC 207
BLAST of mRNA_Ecto-sp13_S_contig13548.2816.1 vs. uniprot
Match: A0A067C8B0_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C8B0_SAPPC) HSP 1 Score: 152 bits (383), Expect = 2.650e-43 Identity = 78/121 (64.46%), Postives = 93/121 (76.86%), Query Frame = 1
Query: 1 VYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAKAEEYARSKGMLFLEASAKTKVGVKQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPN--PNQAGGGLCC 357
VYDV R ETF+NL WL+EVE Y P GR+VVKLLVGNK+DKERVV+R + E +ARSKGMLF+E+SAKTK+G++QVF EVVQKILDNP+LLANTAP V+ S P+ GG CC
Sbjct: 91 VYDVARKETFENLGTWLQEVEVYSPANGRDVVKLLVGNKIDKERVVSRQEGEAWARSKGMLFVESSAKTKIGIQQVFNEVVQKILDNPALLANTAPRSRAKKVNLSADKYAPHANAGGGCC 211
BLAST of mRNA_Ecto-sp13_S_contig13548.2816.1 vs. uniprot
Match: M4BML9_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BML9_HYAAE) HSP 1 Score: 148 bits (374), Expect = 9.550e-43 Identity = 72/119 (60.50%), Postives = 92/119 (77.31%), Query Frame = 1
Query: 1 VYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAKAEEYARSKGMLFLEASAKTKVGVKQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPNQAGGGLCC 357
VYDV R +TF+NL WL+EVE Y P GR+VVKLLVGNK+DK+R+V+R +AE++ARSKGMLF+E+SAKTK+G++QVF EVVQKIL+NP+LL+NTAP +D GG CC
Sbjct: 31 VYDVARRDTFENLDLWLQEVEVYSPAGGRDVVKLLVGNKIDKDRIVSRREAEDWARSKGMLFVESSAKTKIGIQQVFNEVVQKILENPALLSNTAPRSRGRKLDGKAEKSGGGGGSGCC 149
BLAST of mRNA_Ecto-sp13_S_contig13548.2816.1 vs. uniprot
Match: K3WMM1_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WMM1_GLOUD) HSP 1 Score: 147 bits (372), Expect = 9.640e-42 Identity = 74/119 (62.18%), Postives = 92/119 (77.31%), Query Frame = 1
Query: 1 VYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAKAEEYARSKGMLFLEASAKTKVGVKQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPNQAGGGLCC 357
VYDV R +TF+NL WL+EVE Y P G++VVKLLVGNK+DKERVV+R +AE++ARSKGMLF+E+SAKTK+G++QVF EVVQKIL+NP+LL T P R D S + GGG CC
Sbjct: 86 VYDVARRDTFENLDLWLQEVEVYSPAGGKDVVKLLVGNKIDKERVVSRREAEDWARSKGMLFVESSAKTKIGIQQVFNEVVQKILENPALLGTTRP-RTNDRATLSGKDGKSGGGGGCC 203
BLAST of mRNA_Ecto-sp13_S_contig13548.2816.1 vs. uniprot
Match: A0A7S2XXK5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXK5_9STRA) HSP 1 Score: 145 bits (367), Expect = 9.720e-42 Identity = 75/120 (62.50%), Postives = 95/120 (79.17%), Query Frame = 1
Query: 1 VYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAKAEEYARSKGMLFLEASAKTKVGVKQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPNQAGGGLCCG 360
VYDV+ ETF+NLS+WL+EVE Y P G+++VKLLVGNK+DKER V++ +A+ +ARS+ M+F+EASAKTKVGVK VF EVVQKILDNP LLA+T +PR TV+P + GGG CCG
Sbjct: 28 VYDVSWRETFENLSQWLQEVEIYSPNGGKDMVKLLVGNKIDKERQVSKQEAQSWARSRNMIFMEASAKTKVGVKTVFSEVVQKILDNPVLLASTVQ-KPRGTVNPGQSTTANQGGG-CCG 145
BLAST of mRNA_Ecto-sp13_S_contig13548.2816.1 vs. uniprot
Match: D0NMU9_PHYIT (Rab18 family GTPase, putative n=6 Tax=Oomycota TaxID=4762 RepID=D0NMU9_PHYIT) HSP 1 Score: 147 bits (370), Expect = 1.880e-41 Identity = 74/119 (62.18%), Postives = 92/119 (77.31%), Query Frame = 1
Query: 1 VYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAKAEEYARSKGMLFLEASAKTKVGVKQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPNQAGGGLCC 357
VYDV R +TF+NL WL+EVE Y P GR+VVKLLVGNK+DKERVV+R +AE++ARSKGMLF+E+SAKTK+G++QVF EVVQKIL+NP+LL+NTAP +D GG CC
Sbjct: 86 VYDVARRDTFENLDLWLQEVEVYSPAGGRDVVKLLVGNKIDKERVVSRREAEDWARSKGMLFVESSAKTKIGIQQVFNEVVQKILENPALLSNTAPRSRGRKLDAKAEK--SGGGNGCC 202
BLAST of mRNA_Ecto-sp13_S_contig13548.2816.1 vs. uniprot
Match: W2LN00_PHYPR (Uncharacterized protein n=14 Tax=Phytophthora parasitica TaxID=4792 RepID=W2LN00_PHYPR) HSP 1 Score: 146 bits (369), Expect = 1.990e-41 Identity = 74/119 (62.18%), Postives = 92/119 (77.31%), Query Frame = 1
Query: 1 VYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAKAEEYARSKGMLFLEASAKTKVGVKQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPNQAGGGLCC 357
VYDV R +TF+NL WL+EVE Y P GR+VVKLLVGNK+DKERVV+R +AE++ARSKGMLF+E+SAKTK+G++QVF EVVQKIL+NP+LL+NTAP +D GG CC
Sbjct: 76 VYDVARRDTFENLDLWLQEVEVYSPAGGRDVVKLLVGNKIDKERVVSRREAEDWARSKGMLFVESSAKTKIGIQQVFNEVVQKILENPALLSNTAPRSRGRKLDGKAEK--SGGGSGCC 192
BLAST of mRNA_Ecto-sp13_S_contig13548.2816.1 vs. uniprot
Match: W7UBM5_9STRA (Rab family gtpase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBM5_9STRA) HSP 1 Score: 151 bits (382), Expect = 2.280e-41 Identity = 75/100 (75.00%), Postives = 87/100 (87.00%), Query Frame = 1
Query: 1 VYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAKAEEYARSKGMLFLEASAKTKVGVKQVFEEVVQKILDNPSLLANTAPGRPR 300
VYDV R E+F+NL+ WL+EVE Y G GRE+VK+LVGNKVDKER+V R +AE +ARSKGMLFLEASAKT+ G++QVF EVVQKILDNPSLL NTAPGRPR
Sbjct: 147 VYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGRPR 246 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13548.2816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13548.2816.1 >prot_Ecto-sp13_S_contig13548.2816.1 ID=prot_Ecto-sp13_S_contig13548.2816.1|Name=mRNA_Ecto-sp13_S_contig13548.2816.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp MLFLEASAKTKVGVKQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNback to top mRNA from alignment at Ecto-sp13_S_contig13548:1700..4399- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13548.2816.1 ID=mRNA_Ecto-sp13_S_contig13548.2816.1|Name=mRNA_Ecto-sp13_S_contig13548.2816.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2700bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13548:1700..4399- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13548:1700..4399- >mRNA_Ecto-sp13_S_contig13548.2816.1 ID=mRNA_Ecto-sp13_S_contig13548.2816.1|Name=mRNA_Ecto-sp13_S_contig13548.2816.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13548:1700..4399- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |