mRNA_Ecto-sp13_S_contig13545.2814.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13545.2814.1
Unique NamemRNA_Ecto-sp13_S_contig13545.2814.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13545.2814.1 vs. uniprot
Match: UPI001C141468 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C141468)

HSP 1 Score: 88.2 bits (217), Expect = 8.760e-18
Identity = 50/115 (43.48%), Postives = 68/115 (59.13%), Query Frame = 1
Query:   58 QEFAVDQNARQDDLTLSYIQHELPEKRSTTKKAIRDN---PSNAPVGKR--LPASFHGSTINTKRKQLDAMAVVTRMGPPDLMVTFTANSNWPEITANLLPGQTGMDRPDLVNRV 387
            Q++ VDQ A+ +   L+Y++H     R+     + D      N+ VG+R  LP+SF GS     +   DAM++V+R G PDL VTFT N  WPEIT  LLP Q+ +DRPDL  RV
Sbjct:   24 QQYIVDQYAKIEQNRLNYLKHNQATLRTDLYNGVMDAIHANDNSNVGRRIILPSSFAGSPRQMYQLYQDAMSIVSRFGKPDLFVTFTCNPRWPEITRELLPHQSAVDRPDLTARV 138          
BLAST of mRNA_Ecto-sp13_S_contig13545.2814.1 vs. uniprot
Match: UPI001C18D13B (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C18D13B)

HSP 1 Score: 86.7 bits (213), Expect = 3.120e-17
Identity = 49/115 (42.61%), Postives = 68/115 (59.13%), Query Frame = 1
Query:   58 QEFAVDQNARQDDLTLSYIQHELPEKRSTTKKAIRDN---PSNAPVGKR--LPASFHGSTINTKRKQLDAMAVVTRMGPPDLMVTFTANSNWPEITANLLPGQTGMDRPDLVNRV 387
            Q++ VDQ A+ +   L+Y++H     ++     + D      N+ VG+R  LP+SF GS     +   DAM++V+R G PDL VTFT N  WPEIT  LLP Q+ +DRPDL  RV
Sbjct:  286 QQYIVDQYAKIEQNRLNYLKHNQATLQTDLYNGVMDAIHANDNSNVGRRIILPSSFAGSPRQMYQLYQDAMSIVSRFGKPDLFVTFTCNPRWPEITRELLPHQSAVDRPDLTARV 400          
BLAST of mRNA_Ecto-sp13_S_contig13545.2814.1 vs. uniprot
Match: A0A015II56_RHIIW (ATP-dependent DNA helicase n=5 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015II56_RHIIW)

HSP 1 Score: 85.5 bits (210), Expect = 8.100e-17
Identity = 49/115 (42.61%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   58 QEFAVDQNARQDDLTLSYIQHELPEKRSTTKKAIRDN---PSNAPVGKR--LPASFHGSTINTKRKQLDAMAVVTRMGPPDLMVTFTANSNWPEITANLLPGQTGMDRPDLVNRV 387
            Q++ VDQ A+ +   L+Y++H     R+     + D      N+ VG+R  LP+SF G      +   DAM +V+R G PDL VTFT N  WPEIT  LLP Q+ +DRPDL  RV
Sbjct:  392 QQYIVDQYAKIEQNRLNYLKHNQATLRTDLYNGVMDAIHANDNSNVGRRIILPSSFAGGPRQMYQLYQDAMFIVSRFGKPDLFVTFTCNPRWPEITRELLPHQSAVDRPDLTARV 506          
BLAST of mRNA_Ecto-sp13_S_contig13545.2814.1 vs. uniprot
Match: UPI000B77DA4D (uncharacterized protein LOC110728269 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B77DA4D)

HSP 1 Score: 84.7 bits (208), Expect = 1.440e-16
Identity = 50/119 (42.02%), Postives = 68/119 (57.14%), Query Frame = 1
Query:   58 QEFAVDQNARQDDLTLSYIQHELPEKRSTTKKAIRD-------NPSNAPVGKR--LPASFHGSTINTKRKQLDAMAVVTRMGPPDLMVTFTANSNWPEITANLLPGQTGMDRPDLVNRV 387
            Q++ VD   + ++  L + +H     R+   + I D       NP N  VG+R  LP +F G   + KR+ L+AMA+V R G PDL VT T N+NWPEI A L PG+   +RPDLV RV
Sbjct:  336 QQYIVDMYVKIENTRLDFFRHNQHAIRADLYQGILDSIESGETNPMN--VGRRVILPPTFIGGPRDMKRRYLNAMALVQRFGKPDLFVTMTCNANWPEIKAELAPGEAAQNRPDLVARV 452          
BLAST of mRNA_Ecto-sp13_S_contig13545.2814.1 vs. uniprot
Match: A0A197JE17_9FUNG (Helitron_like_N domain-containing protein (Fragment) n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JE17_9FUNG)

HSP 1 Score: 79.7 bits (195), Expect = 5.110e-16
Identity = 44/125 (35.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   37 HVLSTVTQEFAVDQNARQDDLTLSYIQHELPEKRSTTKKAIRD--------NPSNAPVGKRLPASFHGSTINTKRKQLDAMAVVTRMGPPDLMVTFTANSNWPEITANLLPGQTGMDRPDLVNRV 387
            H+   + Q++ VDQ A+ +   L + +    +  S   + + D         P++      LP++F G   + +++  DAM +V+R+G PDL +TFT N  WPEIT  LL GQT  DRPDL  RV
Sbjct:   14 HMFGRLFQQYVVDQYAKVEGERLRWYRENQDDYLSAHFQGLADAYSANDGCTPADVSRSTILPSTFTGGPRHMQQQFQDAMGIVSRLGKPDLFITFTCNPKWPEITKYLLGGQTASDRPDLTTRV 138          
BLAST of mRNA_Ecto-sp13_S_contig13545.2814.1 vs. uniprot
Match: UPI000B7805B7 (uncharacterized protein LOC110704077 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B7805B7)

HSP 1 Score: 83.2 bits (204), Expect = 5.200e-16
Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = 1
Query:   58 QEFAVDQNARQDDLTLSYIQHELPEKRSTTKKAIRDN-----PSNAPVGKR--LPASFHGSTINTKRKQLDAMAVVTRMGPPDLMVTFTANSNWPEITANLLPGQTGMDRPDLVNRV 387
            Q++ VD   + ++  L Y +H   + R    + + D+      S   +G+R  LP +F G   + KR+ L+AMA+V R G PDL VT T N+NWPEI A L PG+   +RPDLV R+
Sbjct:  443 QQYIVDMYVKIENTRLDYFRHNQQKIRDDLYQRVLDSIQDGETSAINIGRRVILPPTFIGGPRDMKRRYLNAMALVQRFGKPDLFVTMTCNANWPEIKAELAPGELAQNRPDLVARI 559          
BLAST of mRNA_Ecto-sp13_S_contig13545.2814.1 vs. uniprot
Match: A0A0C9WJA2_9AGAR (Helitron_like_N domain-containing protein n=1 Tax=Laccaria amethystina LaAM-08-1 TaxID=1095629 RepID=A0A0C9WJA2_9AGAR)

HSP 1 Score: 82.8 bits (203), Expect = 6.860e-16
Identity = 56/141 (39.72%), Postives = 75/141 (53.19%), Query Frame = 1
Query:    1 YSRQRL--LIEPAFHVLST--VTQEFAVDQNARQDDLTLSYIQHELPEKRSTTKKAIRD------NPSNAPVGKR--LPASFHGSTINTKRKQLDAMAVVTRMGPPDLMVTFTANSNWPEITANLLPGQTGMDRPDLVNRV 387
            Y R RL   I  + H+     + QE+ VD  A  +   L YI+    E R+ T + + D      N +   +G+R  LP+SF GST N  +   DA+A+       DL +T TAN NWPE+T  LLPGQ+  DRPDLV RV
Sbjct:  673 YFRYRLHPRIGESLHIFMAGKLFQEYIVDAWALSEQARLLYIETHQKELRAETYQGVVDALASDVNATGNEIGQRTILPSSFAGSTRNMIQNCQDALAINRHFHGADLFITITANPNWPEVTRELLPGQSASDRPDLVVRV 813          
BLAST of mRNA_Ecto-sp13_S_contig13545.2814.1 vs. uniprot
Match: UPI0005C80AA6 (uncharacterized protein LOC101307898 n=1 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0005C80AA6)

HSP 1 Score: 82.4 bits (202), Expect = 8.680e-16
Identity = 48/119 (40.34%), Postives = 68/119 (57.14%), Query Frame = 1
Query:   58 QEFAVDQNARQDDLTLSYIQHELPEKRST-------TKKAIRDNPSNAPVGKR--LPASFHGSTINTKRKQLDAMAVVTRMGPPDLMVTFTANSNWPEITANLLPGQTGMDRPDLVNRV 387
            Q++AVD   + +   L YI++  P+ R         +  A  DN  N  +G+R  LP++F GS  +  ++  DAMA+V + G PD+ +T T N NW EI A LLPGQT  DRPDL  R+
Sbjct:  205 QQYAVDNYVKIETQKLRYIRNNQPDLRCEFYNGLHDSLNAGEDNAGN--IGRRIILPSTFIGSPRDMHQRYQDAMALVQKYGKPDIFLTMTCNPNWDEIKAELLPGQTSQDRPDLCTRI 321          
BLAST of mRNA_Ecto-sp13_S_contig13545.2814.1 vs. uniprot
Match: A0A2Z6QLL9_9GLOM (Helitron_like_N domain-containing protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QLL9_9GLOM)

HSP 1 Score: 82.4 bits (202), Expect = 9.240e-16
Identity = 46/115 (40.00%), Postives = 64/115 (55.65%), Query Frame = 1
Query:   58 QEFAVDQNARQDDLTLSYIQHELPEKRSTTKKAIRD---NPSNAPVGKR--LPASFHGSTINTKRKQLDAMAVVTRMGPPDLMVTFTANSNWPEITANLLPGQTGMDRPDLVNRV 387
            Q++ VDQ A+ +   L+Y++H     R+     + D      +  VG+R  LP+SF G      +   DAM +V+  G PDL VTFT N  WPEIT  LLP Q+ +DRPDL  R+
Sbjct:  347 QQYIVDQYAKVEQNRLNYLRHNQASLRTDLYNGVSDAIHTGDSTQVGQRIILPSSFAGGPRQMYQLYQDAMTIVSYFGKPDLFVTFTCNPKWPEITRELLPHQSAVDRPDLTARI 461          
BLAST of mRNA_Ecto-sp13_S_contig13545.2814.1 vs. uniprot
Match: A0A8H3L3B0_9GLOM (ATP-dependent DNA helicase n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3L3B0_9GLOM)

HSP 1 Score: 82.4 bits (202), Expect = 9.590e-16
Identity = 46/115 (40.00%), Postives = 64/115 (55.65%), Query Frame = 1
Query:   58 QEFAVDQNARQDDLTLSYIQHELPEKRSTTKKAIRD---NPSNAPVGKR--LPASFHGSTINTKRKQLDAMAVVTRMGPPDLMVTFTANSNWPEITANLLPGQTGMDRPDLVNRV 387
            Q++ VDQ A+ +   L+Y++H     R+     + D      +  VG+R  LP+SF G      +   DAM +V+  G PDL VTFT N  WPEIT  LLP Q+ +DRPDL  R+
Sbjct:  302 QQYIVDQYAKVEQNQLNYLRHNQASLRTDLYNGVSDAIHTGDSTQVGQRIILPSSFAGGLHQMYQLYQDAMTIVSYFGKPDLFVTFTCNPKWPEITRELLPHQSAVDRPDLTARI 416          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13545.2814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C1414688.760e-1843.48Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
UPI001C18D13B3.120e-1742.61Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
A0A015II56_RHIIW8.100e-1742.61ATP-dependent DNA helicase n=5 Tax=Rhizophagus irr... [more]
UPI000B77DA4D1.440e-1642.02uncharacterized protein LOC110728269 n=1 Tax=Cheno... [more]
A0A197JE17_9FUNG5.110e-1635.20Helitron_like_N domain-containing protein (Fragmen... [more]
UPI000B7805B75.200e-1639.32uncharacterized protein LOC110704077 n=1 Tax=Cheno... [more]
A0A0C9WJA2_9AGAR6.860e-1639.72Helitron_like_N domain-containing protein n=1 Tax=... [more]
UPI0005C80AA68.680e-1640.34uncharacterized protein LOC101307898 n=1 Tax=Fraga... [more]
A0A2Z6QLL9_9GLOM9.240e-1640.00Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A8H3L3B0_9GLOM9.590e-1640.00ATP-dependent DNA helicase n=2 Tax=Rhizophagus cla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13545contigEcto-sp13_S_contig13545:3072..3458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop0
Start0
Seed ortholog score90.5
Seed ortholog evalue6.2e-16
Seed eggNOG ortholog4538.ORGLA02G0146300.1
Model size387
KEGG koko:K07466,ko:K15255
KEGG Pathwayko03030,ko03420,ko03430,ko03440,ko03460,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00288
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Belongs to the helicase family
EggNOG OGs37I5H@33090,3GMSB@35493,3M24Q@4447,COG0507@1,KOG0987@2759
EC3.6.4.12
Cds size387
COG Functional cat.D
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03000,ko03029,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462723.4037125-CDS-Ecto-sp13_S_contig13545:3071..34581681462723.4037125-CDS-Ecto-sp13_S_contig13545:3071..3458Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13545 3072..3458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13545.2814.1prot_Ecto-sp13_S_contig13545.2814.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13545 3072..3458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13545.2814.1

>prot_Ecto-sp13_S_contig13545.2814.1 ID=prot_Ecto-sp13_S_contig13545.2814.1|Name=mRNA_Ecto-sp13_S_contig13545.2814.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp
YSRQRLLIEPAFHVLSTVTQEFAVDQNARQDDLTLSYIQHELPEKRSTTK
KAIRDNPSNAPVGKRLPASFHGSTINTKRKQLDAMAVVTRMGPPDLMVTF
TANSNWPEITANLLPGQTGMDRPDLVNRV
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mRNA from alignment at Ecto-sp13_S_contig13545:3072..3458+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13545.2814.1 ID=mRNA_Ecto-sp13_S_contig13545.2814.1|Name=mRNA_Ecto-sp13_S_contig13545.2814.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13545:3072..3458+ (Ectocarpus species13 EcNAP12_S_4_19m)
TATTCACGACAACGCCTTCTCATTGAACCAGCATTCCATGTGCTTTCAAC GGTAACTCAGGAGTTTGCCGTTGATCAGAACGCTCGACAAGATGATCTCA CCCTATCCTATATTCAACACGAACTGCCCGAAAAGCGATCAACCACAAAA AAGGCAATAAGAGATAATCCGAGCAATGCACCAGTCGGCAAACGCCTACC GGCAAGTTTTCATGGCTCAACCATCAACACCAAGAGAAAACAGCTAGATG CCATGGCAGTAGTTACGCGGATGGGCCCACCTGATCTTATGGTCACCTTC ACTGCTAACAGCAACTGGCCTGAAATAACAGCGAACCTTCTGCCTGGCCA AACCGGCATGGATCGCCCTGACCTCGTTAATCGTGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13545:3072..3458+

>mRNA_Ecto-sp13_S_contig13545.2814.1 ID=mRNA_Ecto-sp13_S_contig13545.2814.1|Name=mRNA_Ecto-sp13_S_contig13545.2814.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13545:3072..3458+ (Ectocarpus species13 EcNAP12_S_4_19m)
TATTCACGACAACGCCTTCTCATTGAACCAGCATTCCATGTGCTTTCAAC
GGTAACTCAGGAGTTTGCCGTTGATCAGAACGCTCGACAAGATGATCTCA
CCCTATCCTATATTCAACACGAACTGCCCGAAAAGCGATCAACCACAAAA
AAGGCAATAAGAGATAATCCGAGCAATGCACCAGTCGGCAAACGCCTACC
GGCAAGTTTTCATGGCTCAACCATCAACACCAAGAGAAAACAGCTAGATG
CCATGGCAGTAGTTACGCGGATGGGCCCACCTGATCTTATGGTCACCTTC
ACTGCTAACAGCAACTGGCCTGAAATAACAGCGAACCTTCTGCCTGGCCA
AACCGGCATGGATCGCCCTGACCTCGTTAATCGTGTT
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