mRNA_Ecto-sp13_S_contig13545.2814.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13545.2814.1 vs. uniprot
Match: UPI001C141468 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C141468) HSP 1 Score: 88.2 bits (217), Expect = 8.760e-18 Identity = 50/115 (43.48%), Postives = 68/115 (59.13%), Query Frame = 1
Query: 58 QEFAVDQNARQDDLTLSYIQHELPEKRSTTKKAIRDN---PSNAPVGKR--LPASFHGSTINTKRKQLDAMAVVTRMGPPDLMVTFTANSNWPEITANLLPGQTGMDRPDLVNRV 387
Q++ VDQ A+ + L+Y++H R+ + D N+ VG+R LP+SF GS + DAM++V+R G PDL VTFT N WPEIT LLP Q+ +DRPDL RV
Sbjct: 24 QQYIVDQYAKIEQNRLNYLKHNQATLRTDLYNGVMDAIHANDNSNVGRRIILPSSFAGSPRQMYQLYQDAMSIVSRFGKPDLFVTFTCNPRWPEITRELLPHQSAVDRPDLTARV 138
BLAST of mRNA_Ecto-sp13_S_contig13545.2814.1 vs. uniprot
Match: UPI001C18D13B (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C18D13B) HSP 1 Score: 86.7 bits (213), Expect = 3.120e-17 Identity = 49/115 (42.61%), Postives = 68/115 (59.13%), Query Frame = 1
Query: 58 QEFAVDQNARQDDLTLSYIQHELPEKRSTTKKAIRDN---PSNAPVGKR--LPASFHGSTINTKRKQLDAMAVVTRMGPPDLMVTFTANSNWPEITANLLPGQTGMDRPDLVNRV 387
Q++ VDQ A+ + L+Y++H ++ + D N+ VG+R LP+SF GS + DAM++V+R G PDL VTFT N WPEIT LLP Q+ +DRPDL RV
Sbjct: 286 QQYIVDQYAKIEQNRLNYLKHNQATLQTDLYNGVMDAIHANDNSNVGRRIILPSSFAGSPRQMYQLYQDAMSIVSRFGKPDLFVTFTCNPRWPEITRELLPHQSAVDRPDLTARV 400
BLAST of mRNA_Ecto-sp13_S_contig13545.2814.1 vs. uniprot
Match: A0A015II56_RHIIW (ATP-dependent DNA helicase n=5 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015II56_RHIIW) HSP 1 Score: 85.5 bits (210), Expect = 8.100e-17 Identity = 49/115 (42.61%), Postives = 66/115 (57.39%), Query Frame = 1
Query: 58 QEFAVDQNARQDDLTLSYIQHELPEKRSTTKKAIRDN---PSNAPVGKR--LPASFHGSTINTKRKQLDAMAVVTRMGPPDLMVTFTANSNWPEITANLLPGQTGMDRPDLVNRV 387
Q++ VDQ A+ + L+Y++H R+ + D N+ VG+R LP+SF G + DAM +V+R G PDL VTFT N WPEIT LLP Q+ +DRPDL RV
Sbjct: 392 QQYIVDQYAKIEQNRLNYLKHNQATLRTDLYNGVMDAIHANDNSNVGRRIILPSSFAGGPRQMYQLYQDAMFIVSRFGKPDLFVTFTCNPRWPEITRELLPHQSAVDRPDLTARV 506
BLAST of mRNA_Ecto-sp13_S_contig13545.2814.1 vs. uniprot
Match: UPI000B77DA4D (uncharacterized protein LOC110728269 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B77DA4D) HSP 1 Score: 84.7 bits (208), Expect = 1.440e-16 Identity = 50/119 (42.02%), Postives = 68/119 (57.14%), Query Frame = 1
Query: 58 QEFAVDQNARQDDLTLSYIQHELPEKRSTTKKAIRD-------NPSNAPVGKR--LPASFHGSTINTKRKQLDAMAVVTRMGPPDLMVTFTANSNWPEITANLLPGQTGMDRPDLVNRV 387
Q++ VD + ++ L + +H R+ + I D NP N VG+R LP +F G + KR+ L+AMA+V R G PDL VT T N+NWPEI A L PG+ +RPDLV RV
Sbjct: 336 QQYIVDMYVKIENTRLDFFRHNQHAIRADLYQGILDSIESGETNPMN--VGRRVILPPTFIGGPRDMKRRYLNAMALVQRFGKPDLFVTMTCNANWPEIKAELAPGEAAQNRPDLVARV 452
BLAST of mRNA_Ecto-sp13_S_contig13545.2814.1 vs. uniprot
Match: A0A197JE17_9FUNG (Helitron_like_N domain-containing protein (Fragment) n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JE17_9FUNG) HSP 1 Score: 79.7 bits (195), Expect = 5.110e-16 Identity = 44/125 (35.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query: 37 HVLSTVTQEFAVDQNARQDDLTLSYIQHELPEKRSTTKKAIRD--------NPSNAPVGKRLPASFHGSTINTKRKQLDAMAVVTRMGPPDLMVTFTANSNWPEITANLLPGQTGMDRPDLVNRV 387
H+ + Q++ VDQ A+ + L + + + S + + D P++ LP++F G + +++ DAM +V+R+G PDL +TFT N WPEIT LL GQT DRPDL RV
Sbjct: 14 HMFGRLFQQYVVDQYAKVEGERLRWYRENQDDYLSAHFQGLADAYSANDGCTPADVSRSTILPSTFTGGPRHMQQQFQDAMGIVSRLGKPDLFITFTCNPKWPEITKYLLGGQTASDRPDLTTRV 138
BLAST of mRNA_Ecto-sp13_S_contig13545.2814.1 vs. uniprot
Match: UPI000B7805B7 (uncharacterized protein LOC110704077 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B7805B7) HSP 1 Score: 83.2 bits (204), Expect = 5.200e-16 Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = 1
Query: 58 QEFAVDQNARQDDLTLSYIQHELPEKRSTTKKAIRDN-----PSNAPVGKR--LPASFHGSTINTKRKQLDAMAVVTRMGPPDLMVTFTANSNWPEITANLLPGQTGMDRPDLVNRV 387
Q++ VD + ++ L Y +H + R + + D+ S +G+R LP +F G + KR+ L+AMA+V R G PDL VT T N+NWPEI A L PG+ +RPDLV R+
Sbjct: 443 QQYIVDMYVKIENTRLDYFRHNQQKIRDDLYQRVLDSIQDGETSAINIGRRVILPPTFIGGPRDMKRRYLNAMALVQRFGKPDLFVTMTCNANWPEIKAELAPGELAQNRPDLVARI 559
BLAST of mRNA_Ecto-sp13_S_contig13545.2814.1 vs. uniprot
Match: A0A0C9WJA2_9AGAR (Helitron_like_N domain-containing protein n=1 Tax=Laccaria amethystina LaAM-08-1 TaxID=1095629 RepID=A0A0C9WJA2_9AGAR) HSP 1 Score: 82.8 bits (203), Expect = 6.860e-16 Identity = 56/141 (39.72%), Postives = 75/141 (53.19%), Query Frame = 1
Query: 1 YSRQRL--LIEPAFHVLST--VTQEFAVDQNARQDDLTLSYIQHELPEKRSTTKKAIRD------NPSNAPVGKR--LPASFHGSTINTKRKQLDAMAVVTRMGPPDLMVTFTANSNWPEITANLLPGQTGMDRPDLVNRV 387
Y R RL I + H+ + QE+ VD A + L YI+ E R+ T + + D N + +G+R LP+SF GST N + DA+A+ DL +T TAN NWPE+T LLPGQ+ DRPDLV RV
Sbjct: 673 YFRYRLHPRIGESLHIFMAGKLFQEYIVDAWALSEQARLLYIETHQKELRAETYQGVVDALASDVNATGNEIGQRTILPSSFAGSTRNMIQNCQDALAINRHFHGADLFITITANPNWPEVTRELLPGQSASDRPDLVVRV 813
BLAST of mRNA_Ecto-sp13_S_contig13545.2814.1 vs. uniprot
Match: UPI0005C80AA6 (uncharacterized protein LOC101307898 n=1 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0005C80AA6) HSP 1 Score: 82.4 bits (202), Expect = 8.680e-16 Identity = 48/119 (40.34%), Postives = 68/119 (57.14%), Query Frame = 1
Query: 58 QEFAVDQNARQDDLTLSYIQHELPEKRST-------TKKAIRDNPSNAPVGKR--LPASFHGSTINTKRKQLDAMAVVTRMGPPDLMVTFTANSNWPEITANLLPGQTGMDRPDLVNRV 387
Q++AVD + + L YI++ P+ R + A DN N +G+R LP++F GS + ++ DAMA+V + G PD+ +T T N NW EI A LLPGQT DRPDL R+
Sbjct: 205 QQYAVDNYVKIETQKLRYIRNNQPDLRCEFYNGLHDSLNAGEDNAGN--IGRRIILPSTFIGSPRDMHQRYQDAMALVQKYGKPDIFLTMTCNPNWDEIKAELLPGQTSQDRPDLCTRI 321
BLAST of mRNA_Ecto-sp13_S_contig13545.2814.1 vs. uniprot
Match: A0A2Z6QLL9_9GLOM (Helitron_like_N domain-containing protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QLL9_9GLOM) HSP 1 Score: 82.4 bits (202), Expect = 9.240e-16 Identity = 46/115 (40.00%), Postives = 64/115 (55.65%), Query Frame = 1
Query: 58 QEFAVDQNARQDDLTLSYIQHELPEKRSTTKKAIRD---NPSNAPVGKR--LPASFHGSTINTKRKQLDAMAVVTRMGPPDLMVTFTANSNWPEITANLLPGQTGMDRPDLVNRV 387
Q++ VDQ A+ + L+Y++H R+ + D + VG+R LP+SF G + DAM +V+ G PDL VTFT N WPEIT LLP Q+ +DRPDL R+
Sbjct: 347 QQYIVDQYAKVEQNRLNYLRHNQASLRTDLYNGVSDAIHTGDSTQVGQRIILPSSFAGGPRQMYQLYQDAMTIVSYFGKPDLFVTFTCNPKWPEITRELLPHQSAVDRPDLTARI 461
BLAST of mRNA_Ecto-sp13_S_contig13545.2814.1 vs. uniprot
Match: A0A8H3L3B0_9GLOM (ATP-dependent DNA helicase n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3L3B0_9GLOM) HSP 1 Score: 82.4 bits (202), Expect = 9.590e-16 Identity = 46/115 (40.00%), Postives = 64/115 (55.65%), Query Frame = 1
Query: 58 QEFAVDQNARQDDLTLSYIQHELPEKRSTTKKAIRD---NPSNAPVGKR--LPASFHGSTINTKRKQLDAMAVVTRMGPPDLMVTFTANSNWPEITANLLPGQTGMDRPDLVNRV 387
Q++ VDQ A+ + L+Y++H R+ + D + VG+R LP+SF G + DAM +V+ G PDL VTFT N WPEIT LLP Q+ +DRPDL R+
Sbjct: 302 QQYIVDQYAKVEQNQLNYLRHNQASLRTDLYNGVSDAIHTGDSTQVGQRIILPSSFAGGLHQMYQLYQDAMTIVSYFGKPDLFVTFTCNPKWPEITRELLPHQSAVDRPDLTARI 416 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13545.2814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13545.2814.1 >prot_Ecto-sp13_S_contig13545.2814.1 ID=prot_Ecto-sp13_S_contig13545.2814.1|Name=mRNA_Ecto-sp13_S_contig13545.2814.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp YSRQRLLIEPAFHVLSTVTQEFAVDQNARQDDLTLSYIQHELPEKRSTTKback to top mRNA from alignment at Ecto-sp13_S_contig13545:3072..3458+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13545.2814.1 ID=mRNA_Ecto-sp13_S_contig13545.2814.1|Name=mRNA_Ecto-sp13_S_contig13545.2814.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13545:3072..3458+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13545:3072..3458+ >mRNA_Ecto-sp13_S_contig13545.2814.1 ID=mRNA_Ecto-sp13_S_contig13545.2814.1|Name=mRNA_Ecto-sp13_S_contig13545.2814.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13545:3072..3458+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |