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Homology
BLAST of mRNA_Ecto-sp13_S_contig13539.2808.1 vs. uniprot
Match: D7G7C4_ECTSI (FYVE-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7C4_ECTSI) HSP 1 Score: 397 bits (1019), Expect = 1.910e-124 Identity = 383/560 (68.39%), Postives = 390/560 (69.64%), Query Frame = 1
Query: 283 IKGSSTSSAPGSPDSLAAAAXXXXXXXXXXXXXXXXXXXXXXXVKDLKLRPSGTSRTLRLKKQAQFTPSPSEFKSRERQDVVDQPFCGVCAAPFTLMMRRQRCAVCAENVCAPCSSDKRHVEGQKGLQRVCDICIVEGPVVLDENGMYAASPSPAATPLPIGTAAXSAAXXXXXXXXXXXXXXXXXXXAAQLRPTSSSSVERERSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVAKGSGGHSMIGGGIRGGGVKGTAKEYFSNAAAAAAA---EGEEAVTVEPERGQKGAAAKQEASVAVEAEMRAVAGAEALGDEEDGEAEGGPPSSVSNTSKGRKRGKKARRAAAADSKTPRDRRQHSWSGQSFSDYGXXXXXXXXXXXXXXXX--PRXXXXXXXXXXXXXXXXXXXXXX-PLYSTAVALAGTXXXXXXXXXXXXXXXSKGKWESVGRQRRSDGSGGDDAGIRDDGPQAQGVGGQGGAASAFVMDFIRGAGIHRLDPRRI 1944
+KG+S SAPGSPDSLAAAA XXXXXXXXXXXXXXXXXXXXVKDLKLRPSGTSRTLRLKKQAQFTPSPSEFKSRERQDVVDQPFCGVCAAPFTLMMRRQRCAVCA++VCAPCSSDKRHVEGQKGLQRVCDICIVEGPVVLDENGMYAASPSP XXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXX TVAKGSGGHSM GGGIR EGEEAVT E ERG KGAA KQEASV VEAEMRA AGAEALGDEEDGEAEGGPPSSVSNTSKGRKRGK SKTP+DRRQHSWS QSFSD XXXXXXXX PR XXXXXXXXXX P STAVALAGT XXXXXXXXXXXXSKGKWESVG QRRS GSG +AG DDGPQAQG G ASAFVMDF+RGAGIHRLDPRRI
Sbjct: 1 MKGNSNGSAPGSPDSLAAAADARXXXXXXXXXXXXXXXXXXXXVKDLKLRPSGTSRTLRLKKQAQFTPSPSEFKSRERQDVVDQPFCGVCAAPFTLMMRRQRCAVCADSVCAPCSSDKRHVEGQKGLQRVCDICIVEGPVVLDENGMYAASPSP----------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSRVKPRKSPATATVKAAADAAKLRPKSQAXXXXXXXXTFKPPRSPVTVTTVAKGSGGHSMSGGGIRXXXXXXXXXXXXXXXXXXXXXXXXEGEEAVTSESERGHKGAAGKQEASVTVEAEMRAAAGAEALGDEEDGEAEGGPPSSVSNTSKGRKRGKXXXXXXXXXSKTPQDRRQHSWSSQSFSDXXXXXXXXXXTPGTRSSRSTPRSNGGNDFSHAXXXXXXXXXXNTAPFCSTAVALAGTASKXXXXXXXXXXXXSKGKWESVGGQRRSAGSGVGEAGTSDDGPQAQG-----GVASAFVMDFVRGAGIHRLDPRRI 533
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 1 |
| Model size | 2049 |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Ec32 ortholog description | Zinc finger, RING/FYVE/PHD-type |
| Ec32 ortholog | Ec-04_003330.1 |
| Cds size | 2049 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462722.8633945-CDS-Ecto-sp13_S_contig13539:68..597 | 1681462722.8633945-CDS-Ecto-sp13_S_contig13539:68..597 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig13539 69..597 + |
| 1681462722.8714354-CDS-Ecto-sp13_S_contig13539:1009..1129 | 1681462722.8714354-CDS-Ecto-sp13_S_contig13539:1009..1129 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig13539 1010..1129 + |
| 1681462722.8792727-CDS-Ecto-sp13_S_contig13539:1675..1970 | 1681462722.8792727-CDS-Ecto-sp13_S_contig13539:1675..1970 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig13539 1676..1970 + |
| 1681462722.887094-CDS-Ecto-sp13_S_contig13539:2225..2694 | 1681462722.887094-CDS-Ecto-sp13_S_contig13539:2225..2694 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig13539 2226..2694 + |
| 1681462722.8962386-CDS-Ecto-sp13_S_contig13539:3038..3164 | 1681462722.8962386-CDS-Ecto-sp13_S_contig13539:3038..3164 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig13539 3039..3164 + |
| 1681462722.9052045-CDS-Ecto-sp13_S_contig13539:4053..4563 | 1681462722.9052045-CDS-Ecto-sp13_S_contig13539:4053..4563 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig13539 4054..4563 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13539.2808.1 >prot_Ecto-sp13_S_contig13539.2808.1 ID=prot_Ecto-sp13_S_contig13539.2808.1|Name=mRNA_Ecto-sp13_S_contig13539.2808.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=683bp
MTPPPRKKKQVQDSLSKTKQDPSSSASGGGKDKDGNAPMSGSSSTHSSVE KPPDKPSSSRIASILSGSSNHGGSSNTTTTNNNKASSLFGPLLDIKGSST SSAPGSPDSLAAAADARAVAVAVDGGGGGGVASSKKKVKDLKLRPSGTSR TLRLKKQAQFTPSPSEFKSRERQDVVDQPFCGVCAAPFTLMMRRQRCAVC AENVCAPCSSDKRHVEGQKGLQRVCDICIVEGPVVLDENGMYAASPSPAA TPLPIGTAAPSAAAPAAPVPAAAAAPIPSVAAAAQLRPTSSSSVERERSS PAPTAAAAAAPAAGASDRSSTAAAAVRRPTAAVKPRKSPATATVKAAADA AKLRPKSQAGAAAAAAAAAAAVTFKPPRSPVTVTTVAKGSGGHSMIGGGI RGGGVKGTAKEYFSNAAAAAAAEGEEAVTVEPERGQKGAAAKQEASVAVE AEMRAVAGAEALGDEEDGEAEGGPPSSVSNTSKGRKRGKKARRAAAADSK TPRDRRQHSWSGQSFSDYGGGGGGNTPGTKSSRSTPRSNGGNDFSHAGGG GGGGAGNTAPLYSTAVALAGTASKAAATTASGGGGGSKGKWESVGRQRRS DGSGGDDAGIRDDGPQAQGVGGQGGAASAFVMDFIRGAGIHRLDPRRIGG EGGAVSAFVKDFVRGAGIHRLDPRRLSGESRFV back to topmRNA from alignment at Ecto-sp13_S_contig13539:69..4563+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig13539.2808.1 ID=mRNA_Ecto-sp13_S_contig13539.2808.1|Name=mRNA_Ecto-sp13_S_contig13539.2808.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13539:69..4563+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGACTCCCCCCCCCCGAAAAAAAAAACAGGTCCAAGACTCGCTGTCCAA
GACCAAGCAAGACCCTTCGTCTTCCGCCTCCGGCGGGGGCAAGGACAAGG
ACGGCAATGCCCCGATGTCGGGCAGCAGCAGCACCCACTCCTCGGTCGAG
AAGCCTCCCGATAAGCCGTCCTCCTCTCGGATCGCAAGCATCCTCAGCGG
CAGCAGCAACCACGGTGGCAGCTCCAACACTACCACCACCAACAATAACA
AGGCCTCCTCCCTGTTCGGCCCGCTCCTGGACATAAAGGGCAGCAGCACC
AGCAGCGCGCCGGGAAGCCCGGACTCGCTCGCGGCGGCGGCAGACGCTCG
GGCCGTCGCCGTCGCCGTCGACGGCGGCGGCGGAGGGGGCGTTGCTTCTT
CCAAGAAGAAGGTGAAGGACCTGAAGCTCCGGCCGTCGGGGACCTCGCGC
ACGCTGCGGCTCAAGAAGCAGGCCCAGTTCACCCCGTCGCCGTCTGAGTT
CAAGTCCCGGGAGAGGCAGGACGTCGTTGGTGAGTCAGTTTTTGCTAGTG
TTCTTTTTGTCTTTTGCATGTTGTGATGTGTTGAGAACGTTCTACGCTGC
CGCAGGAGAGGGGCGACGGACCGGCTGCATTGCCTGGGCATGTGTCGAAG
GTTTTCTAAGGCTCTTCTTCGGCAATGGTAGAGCCAAGCGCTCGGCGCCT
ATCCAGTAGGAAGAAACCGAAGAGTGCGTCCCGCATGGCATGCGAGCGCC
AACGTACCTGACCTCACTGTCAGCACAGCACAGCACTGCACACACTGCGC
AAGGCAGCAAACCAAGAGCCAGCTAGTGCCCCCCCTGTAACCCATCTCCG
GACCCCATCATAAGCATGTCTGCACTCACGGGTCGCGACGCTTGCCCCCT
CCCCCGCCCCCCCTGTCTTTCGTGCCTCCCCGTTCCGTCAGACCAACCTT
TCTGTGGGGTGTGCGCAGCGCCGTTCACCCTGATGATGAGGCGTCAGCGC
TGCGCCGTCTGCGCGGAGAACGTCTGCGCGCCGTGCTCGAGTGACAAGCG
TCACGTCGAAGGTAGGCGCTGCTCGCACGCTGTTGTTGTTGTTGTTGTTG
TTGCCGTCATTGACGACCACCGTAGAGAACCTAACCGCTTTTTCGGCCCT
GGGGAACACGTTGTTCTTTGTGAGATGTGATCGCCATACAACGGCACACA
CTCAGGCCGCTCGGACCTTTCGATTTACACACCCGGTGTCCTTGTTTCGA
GCAACATTCGCTTGGGTTCTTCTTCAAACGAATCGCGAGGCTGCCGGGCA
ACAACTGTGATTGATTCCCCCTATTTCTCTCTCTTTGCGGCTTTGCACAA
CAGTTCAAAGGCCTCCAAGTGTATCATTGTCTCTTGCTGTTGTCCTGGAG
CCGTTCGCAAATACATCTGACAATCCCAGTAGCAGTCCCTCCTTCCTGAT
GGTAGAGTTTGTTGCTCGGGGGTTCCAAGGCGTCCGATCTTGTCATGTGT
GCCTCGTTTTTTTTCGACCCGCGACTGGTCCGCTCGTTTGGTGTCGACGA
AATACCCGTGCCCCGTCTTAAACCACCGTCTGCAATATACTACCGTTCAA
TATCCAGGTCAAAAGGGCCTGCAGCGCGTGTGCGACATCTGTATCGTGGA
GGGACCGGTGGTTCTCGACGAGAACGGTATGTACGCGGCTAGCCCTTCCC
CCGCCGCCACCCCGCTGCCCATCGGCACCGCCGCACCCTCCGCCGCCGCA
CCCGCCGCACCCGTACCCGCCGCCGCCGCCGCCCCCATCCCGTCGGTTGC
CGCGGCCGCGCAGCTCCGCCCGACCTCGTCCTCGTCCGTGGAACGGGAAC
GCTCATCACCCGCTCCAACGGCGGCGGCGGCGGCGGCACCCGCGGCGGGG
GCGTCAGGGGGGAATTCGTCATCGTCATCGTCCTCCGCTTGGTCGTTGGC
GACGAAAAGGTCGTCCTCTAAAGGCGTCGCCGCCGCTGTGCGGTCTCTGT
TTTCGGATTCTCAGTCTACGTCGTCCGGCAAGTCGCCGCCGTCCGCAAAG
TCTTACGCCGCCGCTGCCGCCGCCGCTGCCGCCGCGGCCGCTCTGCCGCC
GAGCACGGCCGGGGACCCCAAGGCGCCCGTCGGAAACGGCGGGGTCGTCA
CCACTAGCTCCGACCGTTCTTCCACTGCCGCCGCCGCCGTGCGCCGGCCC
ACGGCAGCAGTCAAGCCTCGGAAGTCGCCCGCGACGGCGACGGTCAAGGC
GGCCGCCGACGCGGCCAAGCTCCGTCCCAAGTCGCAGGCGGGGGCGGCGG
CGGCGGCGGCGGCGGCAGCGGCGGCGGTGACGTTCAAGCCGCCCAGGTCG
CCCGTGACGGTGACGACCGTTGCCAAGGGTAGCGGTGGGCACAGCATGAT
TGGCGGTGGTATTCGTGGAGGCGGGGTTAAGGGCACCGCCAAGGAATACT
TCAGCAACGCGGCGGCGGCTGCCGCGGCTGAGGGAGAAGAGGCGGTGACG
GTTGAGCCGGAAAGGGGCCAGAAGGGAGCCGCAGCCAAGCAGGAGGCCTC
CGTCGCCGTGGAGGCGGAGATGCGTGCGGTCGCCGGAGCGGAAGCGCTTG
GCGATGAGGAAGACGGGGAGGCAGAGGTAGGAAGGACGTTGTGGTGGTCG
CTTGGTTGCCCTTGTCAAGGTTGCCAAGAAATCTCTCCCGTGGGATGTTG
TCCCGAGTTGGCTGGCTGGGGCTTTTCGAGAGGAACTCTTCTTTGGATTT
GACGTGTGAGGAAAACGGTGTGCAGCCGAGATGTGTTGGGGGTAGTAGGT
GAAGGTGCGGTCACCATTGTTGTTACTGTCCGCGAATCGGCGAAGTCCTG
TACAGGCGGTTATAAGTATATAACTTAGGAGCTGCTGTGCTTTGCGCCAA
AATGTATTCTCAACCTTCTCAATCCCTTCATTTGCGTCTTTTTGCTATGA
TTTATCTTTTCGGACAGCAGGGGGGCCCGCCATCCTCCGTCTCCAACACG
TCCAAGGGCCGCAAGCGCGGGAAGAAGGCTCGCCGGGCCGCCGCTGCCGA
CTCGAAGACTCCGCGGGACAGGAGGCAGCATTCTTGGTCGGGTCAGGTGA
GCGAAGCCTTGTGTGGGAATTGTTTTTGTTTGTTTGGGTCTTGACTTCAA
GTCAGCGCTCACAGCATTTGTGCCGTTTACTCCAACCCGTGTTCACACAA
AAGGGTTCCTCTCCCTGAGCTCCCCCTACCCATCCCTCCCGCGGCGCTTT
GCCTTCGATTTTTGATGCGAGTGGAGTACAGCGCTTTCTGTCCTCTGTGT
GTACAACATTACCAATTTTTGCGGTGCGGCTTTCATGGTTTGTTCGGGGA
CTAATATTTTCGTGATGTGGTTTTGGCACGGCGGTATTAGGCCTGTCGAT
ATATCGGTCGGTGCTTCTTTTGGTTTGGTGCTCCTCTGAGACAGGGGATT
GCCTCCGTGGTATGGGAGGGTGGGTGGCTAGCATCGGCGTTCTCTTATCG
CTGTGGTTCTGGGATGGGCTTGCATTTCGTGGAATGTCGCGCAACGGGTT
GAATCTCGCGTCCTAGCGTCTGTGTACCTGATATCGCGCTACGGGGATGG
GATGGGTGATAATACCGACGAACTCCTGCGGCGTCTTGGTTGACGTTAGC
ATTTCGTGTGTGGTGCTTTCGTGTGTGTTGACGGTGCCTCCTTTTGACCA
CGTGAATGCGATGTTCCGTGCTGCGCGGATGTGGAAGGGGGCAAGCAGGC
GCTTGAGTCCCGTCTTCACTTCCCTCAACCATATTTCCGTTGCTCATATG
CCGCTCTTGCAGCATCCATCGTTCTTTGCATGACCGTACTCGAACCGCGT
TTGCCTTCCCAACTTGAACGTTGAAATGAGGCCTCCTGTCCATCTCCAGT
TTTGAGTTTCGTCCAAGGGTTTACTCTCTTGACAGTCGTTTTATGCATTG
TGACCCCAACGCCCTGTCATCTTTGTCACGTCCAGAGCTTCAGCGACTAC
GGCGGAGGCGGGGGCGGCAACACCCCGGGAACGAAATCCTCCAGGTCCAC
CCCCCGCAGCAACGGCGGCAACGACTTCTCCCACGCCGGCGGCGGCGGCG
GCGGCGGGGCGGGCAACACTGCCCCGTTGTACTCCACCGCTGTTGCATTG
GCAGGGACAGCATCAAAGGCGGCGGCGACCACGGCCTCAGGAGGCGGAGG
AGGGTCGAAGGGAAAGTGGGAGTCTGTGGGAAGGCAGAGGCGTTCTGATG
GCTCGGGAGGAGACGATGCCGGGATCAGGGACGACGGGCCGCAAGCGCAA
GGGGTCGGGGGGCAAGGGGGAGCGGCTAGCGCGTTCGTGATGGACTTCAT
TCGCGGAGCAGGGATACACCGACTCGATCCCCGACGCATCGGGGGGGAAG
GCGGCGCGGTCAGCGCGTTCGTGAAGGACTTCGTTCGCGGGGCGGGGATA
CACCGGCTCGATCCCCGTCGCCTGTCCGGTGAGAGCAGATTTGTT back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig13539:69..4563+ >mRNA_Ecto-sp13_S_contig13539.2808.1 ID=mRNA_Ecto-sp13_S_contig13539.2808.1|Name=mRNA_Ecto-sp13_S_contig13539.2808.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2049bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13539:69..4563+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGACTCCCCCCCCCCGAAAAAAAAAACAGGTCCAAGACTCGCTGTCCAA GACCAAGCAAGACCCTTCGTCTTCCGCCTCCGGCGGGGGCAAGGACAAGG ACGGCAATGCCCCGATGTCGGGCAGCAGCAGCACCCACTCCTCGGTCGAG AAGCCTCCCGATAAGCCGTCCTCCTCTCGGATCGCAAGCATCCTCAGCGG CAGCAGCAACCACGGTGGCAGCTCCAACACTACCACCACCAACAATAACA AGGCCTCCTCCCTGTTCGGCCCGCTCCTGGACATAAAGGGCAGCAGCACC AGCAGCGCGCCGGGAAGCCCGGACTCGCTCGCGGCGGCGGCAGACGCTCG GGCCGTCGCCGTCGCCGTCGACGGCGGCGGCGGAGGGGGCGTTGCTTCTT CCAAGAAGAAGGTGAAGGACCTGAAGCTCCGGCCGTCGGGGACCTCGCGC ACGCTGCGGCTCAAGAAGCAGGCCCAGTTCACCCCGTCGCCGTCTGAGTT CAAGTCCCGGGAGAGGCAGGACGTCGTTGACCAACCTTTCTGTGGGGTGT GCGCAGCGCCGTTCACCCTGATGATGAGGCGTCAGCGCTGCGCCGTCTGC GCGGAGAACGTCTGCGCGCCGTGCTCGAGTGACAAGCGTCACGTCGAAGG TCAAAAGGGCCTGCAGCGCGTGTGCGACATCTGTATCGTGGAGGGACCGG TGGTTCTCGACGAGAACGGTATGTACGCGGCTAGCCCTTCCCCCGCCGCC ACCCCGCTGCCCATCGGCACCGCCGCACCCTCCGCCGCCGCACCCGCCGC ACCCGTACCCGCCGCCGCCGCCGCCCCCATCCCGTCGGTTGCCGCGGCCG CGCAGCTCCGCCCGACCTCGTCCTCGTCCGTGGAACGGGAACGCTCATCA CCCGCTCCAACGGCGGCGGCGGCGGCGGCACCCGCGGCGGGGGCCTCCGA CCGTTCTTCCACTGCCGCCGCCGCCGTGCGCCGGCCCACGGCAGCAGTCA AGCCTCGGAAGTCGCCCGCGACGGCGACGGTCAAGGCGGCCGCCGACGCG GCCAAGCTCCGTCCCAAGTCGCAGGCGGGGGCGGCGGCGGCGGCGGCGGC GGCAGCGGCGGCGGTGACGTTCAAGCCGCCCAGGTCGCCCGTGACGGTGA CGACCGTTGCCAAGGGTAGCGGTGGGCACAGCATGATTGGCGGTGGTATT CGTGGAGGCGGGGTTAAGGGCACCGCCAAGGAATACTTCAGCAACGCGGC GGCGGCTGCCGCGGCTGAGGGAGAAGAGGCGGTGACGGTTGAGCCGGAAA GGGGCCAGAAGGGAGCCGCAGCCAAGCAGGAGGCCTCCGTCGCCGTGGAG GCGGAGATGCGTGCGGTCGCCGGAGCGGAAGCGCTTGGCGATGAGGAAGA CGGGGAGGCAGAGGGGGGCCCGCCATCCTCCGTCTCCAACACGTCCAAGG GCCGCAAGCGCGGGAAGAAGGCTCGCCGGGCCGCCGCTGCCGACTCGAAG ACTCCGCGGGACAGGAGGCAGCATTCTTGGTCGGGTCAGAGCTTCAGCGA CTACGGCGGAGGCGGGGGCGGCAACACCCCGGGAACGAAATCCTCCAGGT CCACCCCCCGCAGCAACGGCGGCAACGACTTCTCCCACGCCGGCGGCGGC GGCGGCGGCGGGGCGGGCAACACTGCCCCGTTGTACTCCACCGCTGTTGC ATTGGCAGGGACAGCATCAAAGGCGGCGGCGACCACGGCCTCAGGAGGCG GAGGAGGGTCGAAGGGAAAGTGGGAGTCTGTGGGAAGGCAGAGGCGTTCT GATGGCTCGGGAGGAGACGATGCCGGGATCAGGGACGACGGGCCGCAAGC GCAAGGGGTCGGGGGGCAAGGGGGAGCGGCTAGCGCGTTCGTGATGGACT TCATTCGCGGAGCAGGGATACACCGACTCGATCCCCGACGCATCGGGGGG GAAGGCGGCGCGGTCAGCGCGTTCGTGAAGGACTTCGTTCGCGGGGCGGG GATACACCGGCTCGATCCCCGTCGCCTGTCCGGTGAGAGCAGATTTGTT back to top
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