mRNA_Ecto-sp13_S_contig1352.2801.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1352.2801.1 vs. uniprot
Match: D7G6X6_ECTSI (RL10P_insert domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6X6_ECTSI) HSP 1 Score: 433 bits (1113), Expect = 1.240e-149 Identity = 224/228 (98.25%), Postives = 226/228 (99.12%), Query Frame = 3
Query: 189 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFMEDSRFFMGKNKVMILALGKSEQDEYKDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGGFEALAEGTNDAMVTE 872
MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDF EDSRFFMGKNKVMILALGKSEQDEY+DNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEG FEALAEGT+DAMVTE
Sbjct: 1 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGEFEALAEGTDDAMVTE 228
BLAST of mRNA_Ecto-sp13_S_contig1352.2801.1 vs. uniprot
Match: A0A835Z2W2_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2W2_9STRA) HSP 1 Score: 224 bits (572), Expect = 1.180e-67 Identity = 118/218 (54.13%), Postives = 154/218 (70.64%), Query Frame = 3
Query: 189 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFMEDSRFFMGKNKVMILALGKSEQDEYKDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGGFEALA 842
MP+S+RN+ VSLT T+KKGR LKQ ++ ++R +D + ++VF + N+RS+L+K+VRLDF DSRFFMGKN +M ALG S +DEY DNLRQVS+ ++GQ GLL T R E V +YF LAV + A GF ETI LP G WPV MM+Q RKLG+ VEV++ L RK +MC G+ ++PE AKLL L+D+KI+ F + L CRWSEG FE A
Sbjct: 1 MPKSKRNKTVSLTSTAKKGRTLKQAVIKDIRDHIDSHQRLFVFRYDNMRSRLMKDVRLDFRGDSRFFMGKNTIMQRALGTSVEDEYSDNLRQVSRHIRGQCGLLVTNRSQEAVLSYFADLAVPEFANAGFFAQETITLPVGPT-QWPVGMMDQLRKLGLQVEVQDSQLWLRKECDMCKKGQALTPEQAKLLTLHDRKISVFKIKLTCRWSEGDFEEYA 217
BLAST of mRNA_Ecto-sp13_S_contig1352.2801.1 vs. uniprot
Match: A0A3M6VK82_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VK82_9STRA) HSP 1 Score: 197 bits (500), Expect = 4.860e-57 Identity = 107/227 (47.14%), Postives = 152/227 (66.96%), Query Frame = 3
Query: 189 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFMEDSRFFMGKNKVMILALGKSEQDEYKDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGGFEALAEGTNDAMVT 869
MP+S+R + LT+ +KKGRELK+ +V +R VD Y S Y FS+ N+R+ K VR+DF +DSRFF+GKNKVM LALG+S+++EY +NL ++SK + G GLLFT +P EEV YF L+V+DH GFV ET+ +P G L + SMME R LG+ V+++ G +V + +C G+ ++PE AKLL +D K+A F + +L WS+ +E LA T DA+ T
Sbjct: 1 MPKSKRQRTKPLTQANKKGRELKKNVVDSIRNAVDTYESAYAFSYQNMRTNHFKNVRMDF-KDSRFFLGKNKVMKLALGRSKEEEYAENLYRLSKDVSGNTGLLFTNKPHEEVMDYFVKLSVSDHPRSGFVATETVTIPEGPLPQFIGSMMESLRGLGLPVDLKNGAIVLSRNYTICKPGQTLTPEQAKLLVHFDHKMAEFKLVMLSVWSKDKYERLA--TEDAVTT 224
BLAST of mRNA_Ecto-sp13_S_contig1352.2801.1 vs. uniprot
Match: A0A6V1SP53_HETAK (Ribosome assembly factor mrt4 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SP53_HETAK) HSP 1 Score: 195 bits (495), Expect = 1.540e-56 Identity = 109/216 (50.46%), Postives = 148/216 (68.52%), Query Frame = 3
Query: 189 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFMEDSRFFMGKNKVMILALGKSEQDEYKDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEG-GFE 833
MP+S+R++KVSLTKT KGR+ KQ +V +VR+ +DE+ ++Y F F N+RS KE R D+ DSRFF+GKNK+M +ALG++ +DEY+D LR +SK L G VGLL T RP +EV++YF + D A G + ET+ L GSL ++P MM + RKLG+ VEV + VL + +C AGEPI E AKLL K+ATF +SL+ RWSE G+E
Sbjct: 1 MPKSKRDKKVSLTKTDSKGRQQKQKMVQKVREAIDEFDALYTFRFDNMRSNNFKECRADW-RDSRFFLGKNKLMQIALGRTPEDEYQDGLRSISKELVGNVGLLMTSRPRDEVESYFSNFSKKDFAKAGAIAPETVTLERGSL-NFPAYMMSEIRKLGLTVEVRDAVLELMEDATICVAGEPIGVEAAKLLEHMQLKLATFQISLVSRWSEADGYE 214
BLAST of mRNA_Ecto-sp13_S_contig1352.2801.1 vs. uniprot
Match: H3GA64_PHYRM (Ribosome assembly factor mrt4 n=24 Tax=Phytophthora TaxID=4783 RepID=H3GA64_PHYRM) HSP 1 Score: 195 bits (496), Expect = 1.910e-56 Identity = 106/227 (46.70%), Postives = 152/227 (66.96%), Query Frame = 3
Query: 189 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFMEDSRFFMGKNKVMILALGKSEQDEYKDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGGFEALAEGTNDAMVT 869
MP+S+R + LT+ +KKG ELKQ +V +R VD Y S YVFSF N+R+ K+VR+DF +DSRFF+GKNKVM LALG+S+++EY +NL ++SK + G GLLFT +P EEV YF L+V+DH GFV ET+ +P G L + SM+E R LG+ V+++ GV+V + +C G+ ++PE AKLL +D K+A F + +L WS+ ++ +A DA T
Sbjct: 1 MPKSKRQRTKPLTQANKKGNELKQNVVEAIRNAVDTYASAYVFSFQNMRTNHFKDVRMDF-KDSRFFLGKNKVMKLALGRSKEEEYAENLFRLSKDVSGSTGLLFTNKPHEEVVAYFAKLSVSDHPRSGFVATETVTIPEGPLPQFIGSMLESLRGLGLPVDLKNGVIVLSRNYTICKPGQTLTPEQAKLLVHFDHKMAEFKLVMLSLWSKDKYQRIA--AEDANAT 224
BLAST of mRNA_Ecto-sp13_S_contig1352.2801.1 vs. uniprot
Match: I2CRG5_NANGC (Ribosome assembly factor mrt4 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRG5_NANGC) HSP 1 Score: 194 bits (494), Expect = 4.550e-56 Identity = 112/229 (48.91%), Postives = 152/229 (66.38%), Query Frame = 3
Query: 159 ADTPSTAAAAMPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFMEDSRFFMGKNKVMILALGKSEQDEYKDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGS--LGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGGFEAL 839
A T + + +MPRS+R+QKVSLTKT+ KG+E K G +++VR+ +D + S+YVFSF ++RS K+VR+D+ DSRFFMGKNKVM ALG +DE++DNLR +SKRL GQVGLL T R EEV TYF+ V D A PG + D + L L +P SM + FRKLG+ +E + G LV +A +C G+ I+PE AKL+ D + F + L+C W +G FE L
Sbjct: 12 AGTEPSLSTSMPRSRRDQKVSLTKTTSKGKEQKAGTIAKVREALDSFTSLYVFSFQHMRSSKFKDVRIDW-RDSRFFMGKNKVMQKALGLLPEDEFRDNLRFLSKRLSGQVGLLATNRSREEVLTYFENFKVQDFAKPGVIADADVTLEPSKDPLHFFPTSMFQLFRKLGLNLETKNGKLVLLEAFPVCRKGKAITPEQAKLMTHLDLPLVDFRIRLVCCWRDGEFEEL 239
BLAST of mRNA_Ecto-sp13_S_contig1352.2801.1 vs. uniprot
Match: A0A485KK68_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KK68_9STRA) HSP 1 Score: 194 bits (494), Expect = 4.690e-56 Identity = 106/219 (48.40%), Postives = 151/219 (68.95%), Query Frame = 3
Query: 189 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFMEDSRFFMGKNKVMILALGKSEQDEYKDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWS-EGGFEALA 842
MP+S+R + LT+T KG +LK+G+V +R +DEY +VYVFSF N+R+ K VR DF DSRFF+GKNKVM +ALG++ ++EY +N+ +++ + G VGLL T +P EEV+ YFK LAV D A GFV ET+ +P G L + SM+E R+LG+ V+++ G +V +C AG+ ++PE AKLL +DKK+ATF + LL RWS +G +E LA
Sbjct: 1 MPKSKRVRTKPLTQTKSKGADLKKGVVETIRNAIDEYQTVYVFSFENMRTNHFKVVRADF-SDSRFFLGKNKVMKVALGRTPEEEYAENIFKLATDISGSVGLLMTNKPNEEVQQYFKDLAVEDFAKSGFVATETVTIPAGPLPQFIGSMVESLRQLGLPVDLKRGAIVLINDHTICKAGQTLTPEQAKLLVHFDKKMATFNVQLLSRWSTDGKYERLA 218
BLAST of mRNA_Ecto-sp13_S_contig1352.2801.1 vs. uniprot
Match: A0A8K1CRH8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRH8_PYTOL) HSP 1 Score: 193 bits (491), Expect = 9.920e-56 Identity = 106/228 (46.49%), Postives = 150/228 (65.79%), Query Frame = 3
Query: 189 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFMEDSRFFMGKNKVMILALGKSEQDEYKDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGGFEALAEGTNDAMVTE 872
MPRS+R + LTK+ KKG ELKQ +V +R+ VD Y S Y FSF N+R+ KEVRLDF DSRFF+GKNKVM LALG+++++EY D+L +++ + G VGL FT R +EV YF L+ D A GFV E + +P G L + S +E R LG+ V++++GV+V R+ +C G+ ++PE A+LL +D+K+ATF ++ L WS+G FE LAE M +
Sbjct: 1 MPRSRRQRVKPLTKSEKKGSELKQRVVDSIREAVDTYESAYAFSFQNMRTNHFKEVRLDF-RDSRFFLGKNKVMKLALGRTKEEEYADDLFKLAADVNGSVGLFFTNRDRQEVIDYFNKLSFTDFARSGFVATEAVSVPEGPLPQFIGSQLESLRTLGLPVDLKKGVVVLRQDYTICKEGQTLTPEQARLLQHFDRKMATFKLTPLSVWSKGSFERLAENPEAGMEVD 227
BLAST of mRNA_Ecto-sp13_S_contig1352.2801.1 vs. uniprot
Match: A0A3F2RLT2_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RLT2_9STRA) HSP 1 Score: 192 bits (489), Expect = 2.360e-55 Identity = 106/227 (46.70%), Postives = 154/227 (67.84%), Query Frame = 3
Query: 189 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFMEDSRFFMGKNKVMILALGKSEQDEYKDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGGFEALAEGTNDAMVT 869
MP+S+R + +LT+ KKG LKQ +V VR VD Y S YVFSF N+R+ K+VR+DF +DSRFF+GKNKVM LALG+S+++EY +NL ++SK + G GLLFT +P EEV YF L+V+D+ GFV ET+ +P G L + SM+E R LG+ V++++GV+V + +C G+ ++PE AKLL +D+K+A F + +L WS+ ++ LA + DA T
Sbjct: 1 MPKSKRQRTKALTQADKKGNALKQNVVDAVRNAVDTYTSAYVFSFQNMRTNHFKDVRMDF-KDSRFFLGKNKVMKLALGRSKEEEYAENLFRLSKDVSGNTGLLFTNKPHEEVLDYFSKLSVSDYPRSGFVVTETVTVPEGPLPQFIGSMIESLRGLGLPVDLKKGVVVLSQNYTICKTGQAVTPEQAKLLVHFDRKMAEFKLVVLSVWSKDKYQRLA--SEDATTT 224
BLAST of mRNA_Ecto-sp13_S_contig1352.2801.1 vs. uniprot
Match: M4C3P0_HYAAE (Ribosome assembly factor mrt4 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C3P0_HYAAE) HSP 1 Score: 192 bits (487), Expect = 4.140e-55 Identity = 103/227 (45.37%), Postives = 156/227 (68.72%), Query Frame = 3
Query: 189 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFMEDSRFFMGKNKVMILALGKSEQDEYKDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGGFEALAEGTNDAMVT 869
MP+S+R + +LT+ +KKG ELK+ +V +R VD Y S YVFSF N+R+ K+VR+DF +DSRFF+GKNKVM LALG+S++DEY +NL ++SK + G GLLFT +P +EV YF L+V+D+ GFV +TI +P G L + SM+E R LG+ V+++ GV++ + +C +G+ ++PE AKLL +D K+A F + +L WS+ +E L+ +DA+ +
Sbjct: 1 MPKSKRQRTKTLTQANKKGNELKKNVVEAIRNAVDTYESAYVFSFQNMRTSHFKDVRMDF-KDSRFFLGKNKVMKLALGRSKEDEYAENLFRLSKDVSGNTGLLFTNKPRDEVVDYFAKLSVSDYPRAGFVATDTITIPEGPLPQFIGSMLESLRGLGLPVDLKNGVVMLSRNYTICKSGQTLTPEQAKLLVHFDHKLAEFKLVMLSVWSKDTYERLS--ADDAVTS 224 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1352.2801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1352.2801.1 >prot_Ecto-sp13_S_contig1352.2801.1 ID=prot_Ecto-sp13_S_contig1352.2801.1|Name=mRNA_Ecto-sp13_S_contig1352.2801.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=229bp MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSback to top mRNA from alignment at Ecto-sp13_S_contig1352:10521..13406- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1352.2801.1 ID=mRNA_Ecto-sp13_S_contig1352.2801.1|Name=mRNA_Ecto-sp13_S_contig1352.2801.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2886bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1352:10521..13406- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1352:10521..13406- >mRNA_Ecto-sp13_S_contig1352.2801.1 ID=mRNA_Ecto-sp13_S_contig1352.2801.1|Name=mRNA_Ecto-sp13_S_contig1352.2801.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=687bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1352:10521..13406- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |