mRNA_Ecto-sp13_S_contig1352.2801.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1352.2801.1
Unique NamemRNA_Ecto-sp13_S_contig1352.2801.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1352.2801.1 vs. uniprot
Match: D7G6X6_ECTSI (RL10P_insert domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6X6_ECTSI)

HSP 1 Score: 433 bits (1113), Expect = 1.240e-149
Identity = 224/228 (98.25%), Postives = 226/228 (99.12%), Query Frame = 3
Query:  189 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFMEDSRFFMGKNKVMILALGKSEQDEYKDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGGFEALAEGTNDAMVTE 872
            MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDF EDSRFFMGKNKVMILALGKSEQDEY+DNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEG FEALAEGT+DAMVTE
Sbjct:    1 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGEFEALAEGTDDAMVTE 228          
BLAST of mRNA_Ecto-sp13_S_contig1352.2801.1 vs. uniprot
Match: A0A835Z2W2_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2W2_9STRA)

HSP 1 Score: 224 bits (572), Expect = 1.180e-67
Identity = 118/218 (54.13%), Postives = 154/218 (70.64%), Query Frame = 3
Query:  189 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFMEDSRFFMGKNKVMILALGKSEQDEYKDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGGFEALA 842
            MP+S+RN+ VSLT T+KKGR LKQ ++ ++R  +D +  ++VF + N+RS+L+K+VRLDF  DSRFFMGKN +M  ALG S +DEY DNLRQVS+ ++GQ GLL T R  E V +YF  LAV + A  GF   ETI LP G    WPV MM+Q RKLG+ VEV++  L  RK  +MC  G+ ++PE AKLL L+D+KI+ F + L CRWSEG FE  A
Sbjct:    1 MPKSKRNKTVSLTSTAKKGRTLKQAVIKDIRDHIDSHQRLFVFRYDNMRSRLMKDVRLDFRGDSRFFMGKNTIMQRALGTSVEDEYSDNLRQVSRHIRGQCGLLVTNRSQEAVLSYFADLAVPEFANAGFFAQETITLPVGPT-QWPVGMMDQLRKLGLQVEVQDSQLWLRKECDMCKKGQALTPEQAKLLTLHDRKISVFKIKLTCRWSEGDFEEYA 217          
BLAST of mRNA_Ecto-sp13_S_contig1352.2801.1 vs. uniprot
Match: A0A3M6VK82_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VK82_9STRA)

HSP 1 Score: 197 bits (500), Expect = 4.860e-57
Identity = 107/227 (47.14%), Postives = 152/227 (66.96%), Query Frame = 3
Query:  189 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFMEDSRFFMGKNKVMILALGKSEQDEYKDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGGFEALAEGTNDAMVT 869
            MP+S+R +   LT+ +KKGRELK+ +V  +R  VD Y S Y FS+ N+R+   K VR+DF +DSRFF+GKNKVM LALG+S+++EY +NL ++SK + G  GLLFT +P EEV  YF  L+V+DH   GFV  ET+ +P G L  +  SMME  R LG+ V+++ G +V  +   +C  G+ ++PE AKLL  +D K+A F + +L  WS+  +E LA  T DA+ T
Sbjct:    1 MPKSKRQRTKPLTQANKKGRELKKNVVDSIRNAVDTYESAYAFSYQNMRTNHFKNVRMDF-KDSRFFLGKNKVMKLALGRSKEEEYAENLYRLSKDVSGNTGLLFTNKPHEEVMDYFVKLSVSDHPRSGFVATETVTIPEGPLPQFIGSMMESLRGLGLPVDLKNGAIVLSRNYTICKPGQTLTPEQAKLLVHFDHKMAEFKLVMLSVWSKDKYERLA--TEDAVTT 224          
BLAST of mRNA_Ecto-sp13_S_contig1352.2801.1 vs. uniprot
Match: A0A6V1SP53_HETAK (Ribosome assembly factor mrt4 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SP53_HETAK)

HSP 1 Score: 195 bits (495), Expect = 1.540e-56
Identity = 109/216 (50.46%), Postives = 148/216 (68.52%), Query Frame = 3
Query:  189 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFMEDSRFFMGKNKVMILALGKSEQDEYKDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEG-GFE 833
            MP+S+R++KVSLTKT  KGR+ KQ +V +VR+ +DE+ ++Y F F N+RS   KE R D+  DSRFF+GKNK+M +ALG++ +DEY+D LR +SK L G VGLL T RP +EV++YF   +  D A  G +  ET+ L  GSL ++P  MM + RKLG+ VEV + VL   +   +C AGEPI  E AKLL     K+ATF +SL+ RWSE  G+E
Sbjct:    1 MPKSKRDKKVSLTKTDSKGRQQKQKMVQKVREAIDEFDALYTFRFDNMRSNNFKECRADW-RDSRFFLGKNKLMQIALGRTPEDEYQDGLRSISKELVGNVGLLMTSRPRDEVESYFSNFSKKDFAKAGAIAPETVTLERGSL-NFPAYMMSEIRKLGLTVEVRDAVLELMEDATICVAGEPIGVEAAKLLEHMQLKLATFQISLVSRWSEADGYE 214          
BLAST of mRNA_Ecto-sp13_S_contig1352.2801.1 vs. uniprot
Match: H3GA64_PHYRM (Ribosome assembly factor mrt4 n=24 Tax=Phytophthora TaxID=4783 RepID=H3GA64_PHYRM)

HSP 1 Score: 195 bits (496), Expect = 1.910e-56
Identity = 106/227 (46.70%), Postives = 152/227 (66.96%), Query Frame = 3
Query:  189 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFMEDSRFFMGKNKVMILALGKSEQDEYKDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGGFEALAEGTNDAMVT 869
            MP+S+R +   LT+ +KKG ELKQ +V  +R  VD Y S YVFSF N+R+   K+VR+DF +DSRFF+GKNKVM LALG+S+++EY +NL ++SK + G  GLLFT +P EEV  YF  L+V+DH   GFV  ET+ +P G L  +  SM+E  R LG+ V+++ GV+V  +   +C  G+ ++PE AKLL  +D K+A F + +L  WS+  ++ +A    DA  T
Sbjct:    1 MPKSKRQRTKPLTQANKKGNELKQNVVEAIRNAVDTYASAYVFSFQNMRTNHFKDVRMDF-KDSRFFLGKNKVMKLALGRSKEEEYAENLFRLSKDVSGSTGLLFTNKPHEEVVAYFAKLSVSDHPRSGFVATETVTIPEGPLPQFIGSMLESLRGLGLPVDLKNGVIVLSRNYTICKPGQTLTPEQAKLLVHFDHKMAEFKLVMLSLWSKDKYQRIA--AEDANAT 224          
BLAST of mRNA_Ecto-sp13_S_contig1352.2801.1 vs. uniprot
Match: I2CRG5_NANGC (Ribosome assembly factor mrt4 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRG5_NANGC)

HSP 1 Score: 194 bits (494), Expect = 4.550e-56
Identity = 112/229 (48.91%), Postives = 152/229 (66.38%), Query Frame = 3
Query:  159 ADTPSTAAAAMPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFMEDSRFFMGKNKVMILALGKSEQDEYKDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGS--LGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGGFEAL 839
            A T  + + +MPRS+R+QKVSLTKT+ KG+E K G +++VR+ +D + S+YVFSF ++RS   K+VR+D+  DSRFFMGKNKVM  ALG   +DE++DNLR +SKRL GQVGLL T R  EEV TYF+   V D A PG + D  + L      L  +P SM + FRKLG+ +E + G LV  +A  +C  G+ I+PE AKL+   D  +  F + L+C W +G FE L
Sbjct:   12 AGTEPSLSTSMPRSRRDQKVSLTKTTSKGKEQKAGTIAKVREALDSFTSLYVFSFQHMRSSKFKDVRIDW-RDSRFFMGKNKVMQKALGLLPEDEFRDNLRFLSKRLSGQVGLLATNRSREEVLTYFENFKVQDFAKPGVIADADVTLEPSKDPLHFFPTSMFQLFRKLGLNLETKNGKLVLLEAFPVCRKGKAITPEQAKLMTHLDLPLVDFRIRLVCCWRDGEFEEL 239          
BLAST of mRNA_Ecto-sp13_S_contig1352.2801.1 vs. uniprot
Match: A0A485KK68_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KK68_9STRA)

HSP 1 Score: 194 bits (494), Expect = 4.690e-56
Identity = 106/219 (48.40%), Postives = 151/219 (68.95%), Query Frame = 3
Query:  189 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFMEDSRFFMGKNKVMILALGKSEQDEYKDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWS-EGGFEALA 842
            MP+S+R +   LT+T  KG +LK+G+V  +R  +DEY +VYVFSF N+R+   K VR DF  DSRFF+GKNKVM +ALG++ ++EY +N+ +++  + G VGLL T +P EEV+ YFK LAV D A  GFV  ET+ +P G L  +  SM+E  R+LG+ V+++ G +V      +C AG+ ++PE AKLL  +DKK+ATF + LL RWS +G +E LA
Sbjct:    1 MPKSKRVRTKPLTQTKSKGADLKKGVVETIRNAIDEYQTVYVFSFENMRTNHFKVVRADF-SDSRFFLGKNKVMKVALGRTPEEEYAENIFKLATDISGSVGLLMTNKPNEEVQQYFKDLAVEDFAKSGFVATETVTIPAGPLPQFIGSMVESLRQLGLPVDLKRGAIVLINDHTICKAGQTLTPEQAKLLVHFDKKMATFNVQLLSRWSTDGKYERLA 218          
BLAST of mRNA_Ecto-sp13_S_contig1352.2801.1 vs. uniprot
Match: A0A8K1CRH8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRH8_PYTOL)

HSP 1 Score: 193 bits (491), Expect = 9.920e-56
Identity = 106/228 (46.49%), Postives = 150/228 (65.79%), Query Frame = 3
Query:  189 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFMEDSRFFMGKNKVMILALGKSEQDEYKDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGGFEALAEGTNDAMVTE 872
            MPRS+R +   LTK+ KKG ELKQ +V  +R+ VD Y S Y FSF N+R+   KEVRLDF  DSRFF+GKNKVM LALG+++++EY D+L +++  + G VGL FT R  +EV  YF  L+  D A  GFV  E + +P G L  +  S +E  R LG+ V++++GV+V R+   +C  G+ ++PE A+LL  +D+K+ATF ++ L  WS+G FE LAE     M  +
Sbjct:    1 MPRSRRQRVKPLTKSEKKGSELKQRVVDSIREAVDTYESAYAFSFQNMRTNHFKEVRLDF-RDSRFFLGKNKVMKLALGRTKEEEYADDLFKLAADVNGSVGLFFTNRDRQEVIDYFNKLSFTDFARSGFVATEAVSVPEGPLPQFIGSQLESLRTLGLPVDLKKGVVVLRQDYTICKEGQTLTPEQARLLQHFDRKMATFKLTPLSVWSKGSFERLAENPEAGMEVD 227          
BLAST of mRNA_Ecto-sp13_S_contig1352.2801.1 vs. uniprot
Match: A0A3F2RLT2_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RLT2_9STRA)

HSP 1 Score: 192 bits (489), Expect = 2.360e-55
Identity = 106/227 (46.70%), Postives = 154/227 (67.84%), Query Frame = 3
Query:  189 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFMEDSRFFMGKNKVMILALGKSEQDEYKDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGGFEALAEGTNDAMVT 869
            MP+S+R +  +LT+  KKG  LKQ +V  VR  VD Y S YVFSF N+R+   K+VR+DF +DSRFF+GKNKVM LALG+S+++EY +NL ++SK + G  GLLFT +P EEV  YF  L+V+D+   GFV  ET+ +P G L  +  SM+E  R LG+ V++++GV+V  +   +C  G+ ++PE AKLL  +D+K+A F + +L  WS+  ++ LA  + DA  T
Sbjct:    1 MPKSKRQRTKALTQADKKGNALKQNVVDAVRNAVDTYTSAYVFSFQNMRTNHFKDVRMDF-KDSRFFLGKNKVMKLALGRSKEEEYAENLFRLSKDVSGNTGLLFTNKPHEEVLDYFSKLSVSDYPRSGFVVTETVTVPEGPLPQFIGSMIESLRGLGLPVDLKKGVVVLSQNYTICKTGQAVTPEQAKLLVHFDRKMAEFKLVVLSVWSKDKYQRLA--SEDATTT 224          
BLAST of mRNA_Ecto-sp13_S_contig1352.2801.1 vs. uniprot
Match: M4C3P0_HYAAE (Ribosome assembly factor mrt4 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C3P0_HYAAE)

HSP 1 Score: 192 bits (487), Expect = 4.140e-55
Identity = 103/227 (45.37%), Postives = 156/227 (68.72%), Query Frame = 3
Query:  189 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFMEDSRFFMGKNKVMILALGKSEQDEYKDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGGFEALAEGTNDAMVT 869
            MP+S+R +  +LT+ +KKG ELK+ +V  +R  VD Y S YVFSF N+R+   K+VR+DF +DSRFF+GKNKVM LALG+S++DEY +NL ++SK + G  GLLFT +P +EV  YF  L+V+D+   GFV  +TI +P G L  +  SM+E  R LG+ V+++ GV++  +   +C +G+ ++PE AKLL  +D K+A F + +L  WS+  +E L+   +DA+ +
Sbjct:    1 MPKSKRQRTKTLTQANKKGNELKKNVVEAIRNAVDTYESAYVFSFQNMRTSHFKDVRMDF-KDSRFFLGKNKVMKLALGRSKEDEYAENLFRLSKDVSGNTGLLFTNKPRDEVVDYFAKLSVSDYPRAGFVATDTITIPEGPLPQFIGSMLESLRGLGLPVDLKNGVVMLSRNYTICKSGQTLTPEQAKLLVHFDHKLAEFKLVMLSVWSKDTYERLS--ADDAVTS 224          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1352.2801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6X6_ECTSI1.240e-14998.25RL10P_insert domain-containing protein n=2 Tax=Ect... [more]
A0A835Z2W2_9STRA1.180e-6754.13Ribosome assembly factor mrt4 n=1 Tax=Tribonema mi... [more]
A0A3M6VK82_9STRA4.860e-5747.14Ribosome assembly factor mrt4 n=1 Tax=Peronospora ... [more]
A0A6V1SP53_HETAK1.540e-5650.46Ribosome assembly factor mrt4 n=1 Tax=Heterosigma ... [more]
H3GA64_PHYRM1.910e-5646.70Ribosome assembly factor mrt4 n=24 Tax=Phytophthor... [more]
I2CRG5_NANGC4.550e-5648.91Ribosome assembly factor mrt4 (Fragment) n=1 Tax=N... [more]
A0A485KK68_9STRA4.690e-5648.40Ribosome assembly factor mrt4 n=1 Tax=Aphanomyces ... [more]
A0A8K1CRH8_PYTOL9.920e-5646.49Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3F2RLT2_9STRA2.360e-5546.70Ribosome assembly factor mrt4 n=1 Tax=Phytophthora... [more]
M4C3P0_HYAAE4.140e-5545.37Ribosome assembly factor mrt4 n=1 Tax=Hyaloperonos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1352contigEcto-sp13_S_contig1352:10521..13406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score439.1
Seed ortholog evalue1.3e-120
Seed eggNOG ortholog2880.D7G6X6
Preferred nameMRTO4
Model size1316
KEGG koko:K14815
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015934,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070180,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Exons3
EggNOG free text desc.ribosomal large subunit assembly
EggNOG OGsCOG0244@1,KOG0816@2759
Ec32 ortholog descriptionRibosomal protein L10/acidic P0
Ec32 orthologEc-01_011870.1
Cds size687
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462722.2885125-UTR-Ecto-sp13_S_contig1352:10520..109611681462722.2885125-UTR-Ecto-sp13_S_contig1352:10520..10961Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1352 10521..10961 -
1681462722.3512864-UTR-Ecto-sp13_S_contig1352:13218..134061681462722.3512864-UTR-Ecto-sp13_S_contig1352:13218..13406Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1352 13219..13406 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462722.3199532-CDS-Ecto-sp13_S_contig1352:10961..110751681462722.3199532-CDS-Ecto-sp13_S_contig1352:10961..11075Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1352 10962..11075 -
1681462722.32911-CDS-Ecto-sp13_S_contig1352:12357..126301681462722.32911-CDS-Ecto-sp13_S_contig1352:12357..12630Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1352 12358..12630 -
1681462722.3426821-CDS-Ecto-sp13_S_contig1352:12918..132181681462722.3426821-CDS-Ecto-sp13_S_contig1352:12918..13218Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1352 12919..13218 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1352.2801.1prot_Ecto-sp13_S_contig1352.2801.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1352 10962..13218 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1352.2801.1

>prot_Ecto-sp13_S_contig1352.2801.1 ID=prot_Ecto-sp13_S_contig1352.2801.1|Name=mRNA_Ecto-sp13_S_contig1352.2801.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=229bp
MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRS
KLLKEVRLDFMEDSRFFMGKNKVMILALGKSEQDEYKDNLRQVSKRLKGQ
VGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSM
MEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIAT
FTMSLLCRWSEGGFEALAEGTNDAMVTE*
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mRNA from alignment at Ecto-sp13_S_contig1352:10521..13406-

Legend: UTRpolypeptideCDS
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>mRNA_Ecto-sp13_S_contig1352.2801.1 ID=mRNA_Ecto-sp13_S_contig1352.2801.1|Name=mRNA_Ecto-sp13_S_contig1352.2801.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2886bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1352:10521..13406- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGTATCTATTTCTCGCTACGCACGTACTGCAATCGAGCGTCGTGCAACG CTCGTGGCCAGGGACGCGTGGAGTGGCAAAGCTGGAGCTGTCAGCGAGCA AGCCCACACTTCAGCAAACGGAGATCTTTCATCATCGAGTTGGGTGGAGG TTAACCGAGCGGACACACCCTCCACAGCAGCAGCAGCTATGCCGCGATCA CAGCGAAACCAGAAGGTTTCACTGACGAAAACTTCCAAGAAGGGCCGGGA GCTGAAGCAGGGTATCGTTAGCGAGGTGCGGAAATGCGTCGACGAGTACC CCAGCGTTTACGTGTTCTCGTTCGTGAACTTGAGGAGCAAGCTCTTGAAG GAGGTCCGGCTGGACTTCATGGAGGACAGCCGCTTCTTCATGGGCAAAAA CAAGGTCATGATACTGGCGCTGGGGAAGTCGGAGCAGGACGAGTACAAGG ACAACTTGAGACAAGTCAGCAAGCGGTTGAAAGGACAGGTGCGTTGAGAG ACGGTGGTGTCACGGACGCGTGTCAGCTTGTTGTAGAACGCGTGCCTGTT TCGCTTCATTCTCCCACAACAGCAGTTGCGTCTGCGAAAGTGTCCACTGC CGCTTGCAATGTATCCCTGCGTTTAGTTTTTCGTGCCGCGGTGACCTTGT GTGTGCGGCTTGGTGAAATACAGCAGTAGTAAATCCCAAGAGCAAACAAG ATGCCACCCTATGCGCACACGCGCAAATCTCGCCCTTTATCTCTCCGCCA TCCTGTTTGCCACATCATGCGCGCAGGTGGGGCTTCTCTTCACAAGAAGG CCAGCGGAGGAGGTCAAGACCTACTTCAAAGCCCTCGCGGTCGCTGACCA CGCGCCGCCCGGGTTCGTTCACGACGAGACCATCCCGCTTCCCACGGGAT CGCTAGGAGATTGGCCTGTATCTATGATGGAGCAGTTCCGAAAGCTTGGG GTGGTGGTGGAGGTGGAGGAGGGGGTGCTGGTGAACCGCAAGGCGATAAA CATGTGCACCGCGGGAGAGCCCATATCGCCCGAGGGGGCCAAGCTCTTGG TGAGTACAGCAGTATTTTTGAGATCCTTCCACTGCTATTGGGTAGTAAAT GGTAGACCCATCGTTATTCCTGCAGTAGCCTTCGGAGGGTTTTAGTATTA AGGAAACATGTTGGATAAAGCTTACAATCGGGGAAGTTGGGCTAGGGCTA GGGCCCCCTCCCTGTTCTATTTCCTTATTATACTGAATTTCCGGCGAAGG CGGTCCTATTCCTGCGGATTGTTTTTCACACAAACCCCGCGGGTTGGCTG TAGAAGATTTTGGATCTGAAACTGTCAGCAGTGCACCTTCCATGGAACAT CAACCCGTGGAAAACGCCTGCCCTGTCTGTATGTTTTTTTTTTCTCTCAT TGTTGGACTCTGTCGCCTGTCCTTCTGGCCCCCATCCTCCACTTCTACTG AATAACTATACGACCGAACCGGGGTCACATAGAAGGAGGGGGCTGGACCC CCTCCTGCGGTTCCTGCCTGAGATACTTTCTTATCGCGATAAGGGTACAG CAATCCCTTCCCTCGCGACTTATGAAGTCGATCGAGTGTACTAACAACGA GCTTTTCAGCGCGTCGCTTCCAACGTAGACCAGGATTTGTGTGGTGAAAA AAAAACTGTAAGGTTATTGGTATGTTGTCCCCCGACTCCCTTGCACGACT GCTGTGGGTGAGCTGTATGGTTTTCCTCTCCCCTGCTATCCATCCGGTCG ATTGAAATAATCGTGGTGTAACTGATGGGTGTAGACTGTAGACTAGCCTT CTTGAGCGTCCACCATAACAGCACTTCCTCTGTGTCAGACAAAGGATGCC ACGACGAAGTCTCACACAGCAAAAGAGTGGCAATGTGACTTAAATTCGGT GGTACACGGGCTAATGGCCTTAGGGCTAGCGGACATGCCGTAAGTTGTGC TAATATCAGGTCTTTGATATGACGACTGACTCCCCAGGAACGATGGATTT CATGTATTTGTTGTTGTGTTGTTGAGGGTTGTCCCATCGAGGCGAGGTGT GGAGGTAGAGGTAAGGTTGTGTGACGCTCGTGGGCATGATAGCAACCAAC CTGCTTTTGCAGTTTAAAGTAGCATATGCCCTCGAAATATAACAAACCCC GATAGCTGGAAGGGAGCGGGGAGTCTTGGGGAGGCGTGAAGGTGCATGTG ACACCTCCTCAACAAACGCCGCAGATGTTACCTCTAAATCAACTCCGTTC ATCTGTATGTGGTACGTCGGTCTGAGCTTGTGTCACAATGTCGTCCATTC CCGTGTCAACGTTACGTATCGTGCTCGGCAGGCCTTGTACGACAAGAAGA TCGCCACGTTTACGATGTCGCTCTTGTGCCGGTGGAGCGAGGGGGGGTTT GAGGCGTTGGCGGAGGGAACGAATGACGCTATGGTCACCGAGTAGTTTCG AACAATCGTAGCAAAAGCACTGAGCGGTGGCTCCCCCTAAACATGAAGGC ATTTGCCTTGTGTTTGGCTCTGAACGTTTGTTGTGTATTTTATTCTGTGT TGAGGATTTGTGTTTCATCCGTAGGGGAGAATTTGGCATGCACAGGGTGT CGGCGGTTTTGTGGAGGACTGGCCTTAGTTCCACAAACGCAAAGATGCTC AACAAAGATGAAAGTGTTGTGTTTTAGTTTTGTTCAAATGTATGACCTGC CCTTGGTGCACGCGAGATGTGCTGTAGTGACAAGAGTGCGATCAGATGCA CCGTAAAAGCGAACGCACAACTTGAGGGGTGTGCAGCAGTATACCTCTTT GACTGTATTTTTGCGGCATGCTAGAAGAATTGCTCAGCTGCTTGCTGCAG GTGAGTTGCTAGAGCATGCACACCTCAACGTTTTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1352:10521..13406-

>mRNA_Ecto-sp13_S_contig1352.2801.1 ID=mRNA_Ecto-sp13_S_contig1352.2801.1|Name=mRNA_Ecto-sp13_S_contig1352.2801.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=687bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1352:10521..13406- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGCGATCACAGCGAAACCAGAAGGTTTCACTGACGAAAACTTCCAA
GAAGGGCCGGGAGCTGAAGCAGGGTATCGTTAGCGAGGTGCGGAAATGCG
TCGACGAGTACCCCAGCGTTTACGTGTTCTCGTTCGTGAACTTGAGGAGC
AAGCTCTTGAAGGAGGTCCGGCTGGACTTCATGGAGGACAGCCGCTTCTT
CATGGGCAAAAACAAGGTCATGATACTGGCGCTGGGGAAGTCGGAGCAGG
ACGAGTACAAGGACAACTTGAGACAAGTCAGCAAGCGGTTGAAAGGACAG
GTGGGGCTTCTCTTCACAAGAAGGCCAGCGGAGGAGGTCAAGACCTACTT
CAAAGCCCTCGCGGTCGCTGACCACGCGCCGCCCGGGTTCGTTCACGACG
AGACCATCCCGCTTCCCACGGGATCGCTAGGAGATTGGCCTGTATCTATG
ATGGAGCAGTTCCGAAAGCTTGGGGTGGTGGTGGAGGTGGAGGAGGGGGT
GCTGGTGAACCGCAAGGCGATAAACATGTGCACCGCGGGAGAGCCCATAT
CGCCCGAGGGGGCCAAGCTCTTGGCCTTGTACGACAAGAAGATCGCCACG
TTTACGATGTCGCTCTTGTGCCGGTGGAGCGAGGGGGGGTTTGAGGCGTT
GGCGGAGGGAACGAATGACGCTATGGTCACCGAGTAG
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