mRNA_Ecto-sp13_S_contig13514.2797.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13514.2797.1
Unique NamemRNA_Ecto-sp13_S_contig13514.2797.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13514.2797.1 vs. uniprot
Match: A0A6H5JJV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV6_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 1.160e-55
Identity = 127/240 (52.92%), Postives = 149/240 (62.08%), Query Frame = 1
Query:    1 DLREVRWPEGTKEISLLLFDKPIQEIAWPLGLECLSFCDLRLDWESPC--W---EKDWFNHPLDGAIFPSGLREMFLGDTXXXXXXXXXXXXXXERLSLPGYDHXXXXXXXXXXXKSLEFTPPLQISIRESPYSNFDDLTFSRSRFNSRFTTLPASLETLWLGDAFRQSLLGVNWPSGLATLGLGVDLTGEWGLSWPSIL-RNLYLAKNMYDWVERPPSGCTVSIMPALDTDEDEDDYGM 702
            D  EV+WPEGT+EISL+LFDKP++ +AWPLGLECLSFC LR    S C  W   ++  FN  L GA FP+GLRE+FLGD               ERLSLPG + XXXXXXXXXXXKSLEFT PLQI +RE P +  D+L      F+S FTTLPASLETLWLGD F QSL  VNWP                         RNLYL + + DWVERPPSGC V+++     D D+D Y +
Sbjct:  130 DFNEVQWPEGTREISLILFDKPVEGMAWPLGLECLSFCALR----SGCGAWHVSDRGSFNRSLVGANFPAGLREIFLGDAFDQPIEDVVWPQGLERLSLPGCNXXXXXXXXXXXXKSLEFTSPLQICLREDPNTRLDELDLV-GVFDSPFTTLPASLETLWLGDEFGQSLESVNWPXXXXXXXXXXXXXXXXXXXXXXXXXRNLYLVREV-DWVERPPSGCKVTVVK---DDPDDDMYDV 360          
BLAST of mRNA_Ecto-sp13_S_contig13514.2797.1 vs. uniprot
Match: A0A6H5JNP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP2_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 5.540e-49
Identity = 118/228 (51.75%), Postives = 137/228 (60.09%), Query Frame = 1
Query:    1 DLREVRWPEGTKEISLLLFDKPIQEIAWPLGLECLSFCDLRLDW-ESPCWEKDWFNHPLDGAIFPSGLREMFLGDTXXXXXXXXXXXXXXERLSLPGYDHXXXXXXXXXXXKSLEFTPPLQISIRESPYSNFDDLTFSRSRFNSRFTTLPASLETLWLGDAFRQSLLGVNWPSGLATLGLGVDLTGEWGLSWPSIL-RNLYLAKNMYDWVERPPSGCTVSIMPALDTD 678
            D  EV+WPEG KE++LL FDK ++ +AWP GLECLSFC LRL    S    +  FN  L GA FPSGLRE+FLGD               ERLSLPG + XXXXXXXXXXXKSLEF+PP QI +RE P +  D L   R RFNS FT LPASLE LWLG+ F QSL GVNWPS                        +NLYL   M DW+E P S C ++I+   DT+
Sbjct:  130 DFDEVQWPEGIKEVNLLSFDKEVEGVAWPKGLECLSFCALRLRCGPSGFANRGSFNRSLVGANFPSGLREIFLGDAFDQPIEDVVWPQGLERLSLPGCNXXXXXXXXXXXXKSLEFSPPSQICLREDPNTRLDVLEPHRDRFNSPFTKLPASLEALWLGNNFCQSLEGVNWPSXXXXXXXXXXXXXXXXXXXXXXXXQNLYLVNEM-DWLEYPES-CMLTIVKDYDTE 355          
BLAST of mRNA_Ecto-sp13_S_contig13514.2797.1 vs. uniprot
Match: D8LHT8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHT8_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 6.450e-44
Identity = 112/228 (49.12%), Postives = 131/228 (57.46%), Query Frame = 1
Query:    1 DLREVRWPEGTKEISLLLFDKPIQEIAWPLGLECLSFCDLRLDWESPCW-EKDWFNHPLDGAIFPSGLREMFLGDTXXXXXXXXXXXXXXERLSLPGYDHXXXXXXXXXXXKSLEFTPPLQISIRESPYSNFDDLTFSRSRFNSRFTTLPASLETLWLGDAFRQSLLGVNWPSGLATLGLGVDLTGEWGLSWPSIL-RNLYLAKNMYDWVERPPSGCTVSIMPALDTD 678
            DL EV+WPEG KE++LLLFD  I+ +AWP GLE LSFC LRL + S  +  +  FN  L GA FPS LRE+FLGD               ERLS PG + XXXXXXXXXXX    F+PP QI +RE P +  D L   R RFNS FT LPASLE LWLG+ F QSL GVNW                          +NLYL   M DW+E P S C V+I+   DT+
Sbjct:   73 DLSEVQWPEGIKEVNLLLFDGDIEGVAWPAGLERLSFCALRLSYGSSGFANRGSFNRSLVGANFPSDLREIFLGDAFDQPIEDVVWPSGLERLSFPGCNXXXXXXXXXXXXXXXXFSPPSQICLREDPNTRLDVLEPHRDRFNSPFTNLPASLEALWLGNNFCQSLEGVNWXXXXXXXXXXXXXXXXXXXXXXXXXXQNLYLVNEM-DWLEYPKS-CMVTIVKDYDTE 298          
BLAST of mRNA_Ecto-sp13_S_contig13514.2797.1 vs. uniprot
Match: A0A6H5JK73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK73_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 2.110e-34
Identity = 98/232 (42.24%), Postives = 120/232 (51.72%), Query Frame = 1
Query:    1 DLREVRWPEGTKEISLLLFDKPIQEIAWPLGLECLSFCDLRLDWES-PCWEKDWFNHPLDGA--IFPSGLREMFLGDTXXXXXXXXXXXXXXERLSLPGYDHXXXXXXXXXXXKSLEFTPPLQISIRESPYSNFDDLTFSRSRFNSRFTTLPASLETLWLGDAFRQSLLGVNWPSGLATLGLGVDLTGEWGLSWPSIL-RNLYLAKNMYDWVERPPSGCTVSIMPALDTDED 684
            DLR+V WPEGTKE++L+LFDK  +   WP+ LE LSF   R   +S    +   F   L GA   FPSGLR++FLG                +RLS+P +  XXXXXXXX         PP +I + E P +  D+L     RFN  FT LPASLETLWLGD F  SL G+NWP                         RNL L + + +W+ERPPSGC V I    D D D
Sbjct:   42 DLRDVHWPEGTKEVALILFDKAFEGATWPVSLERLSFYAFRSGGQSYRVKDIGSFKLSLVGANFSFPSGLRDIFLGAAFDQPIQDVVWPQGLQRLSVPRFXXXXXXXXXXPA-----LNPPWEIRLTEDPNTRLDELGSYWDRFNCPFTHLPASLETLWLGDKFDHSLEGINWPXXXXXXXXXXXXXXXXXXXXXXXXXRNLCLLREV-NWIERPPSGCKVIIAQEDDLDND 267          
BLAST of mRNA_Ecto-sp13_S_contig13514.2797.1 vs. uniprot
Match: A0A6H5JPY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPY0_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 2.570e-29
Identity = 85/224 (37.95%), Postives = 109/224 (48.66%), Query Frame = 1
Query:    1 DLREVRWPEGTKEISLLLFDKPIQEIAWPLGLECLSFCDLRLDWESPCWEKDWFNHPLDGAIFPSGLREMFLGDTXXXXXXXXXXXXXXERLSLPGYDHXXXXXXXXXXXKSLEFTPPLQISIRESPYSNFDDLTFSRSRFNSRFTTLPASLETLWLGDAFRQSLLGVNWPSGLATLGLGVDLTGEWGLSWPSILRNLYLAKNMYDWVERPPSGCTVSIMPALD 672
            DL EV+WPEG KEI LLL D+ I+ + W               W    +     + P     FPS   +   G                + L LPG D            KSLE + P ++ + E+P +N  +       F+S FTTLPASL TLWLGD+F QSL  V WPSGL TLGLG  L+    +SW S LRNLYL   + +W E PP GC V+++   D
Sbjct:   59 DLSEVQWPEGIKEIDLLLLDEVIEGMLW---------------WVWSAFHSARSDFPTSFYYFPS---KTLCGHKDLR-----------DCLYLPGCDQPIDNLWWAPALKSLESSTPSEVRLMETPNTNLHEPRLV-GVFDSPFTTLPASLATLWLGDSFCQSLEDVTWPSGLVTLGLGSTLSEFDSVSWSSNLRNLYLVDEI-EWAEYPP-GCRVNVVMDFD 250          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13514.2797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JJV6_9PHAE1.160e-5552.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNP2_9PHAE5.540e-4951.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHT8_ECTSI6.450e-4449.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JK73_9PHAE2.110e-3442.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPY0_9PHAE2.570e-2937.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13514contigEcto-sp13_S_contig13514:1978..3352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1375
Hectar predicted targeting categoryother localisation
Exons1
Cds size537
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462721.991325-UTR-Ecto-sp13_S_contig13514:1977..21841681462721.991325-UTR-Ecto-sp13_S_contig13514:1977..2184Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13514 1978..2184 +
1681462722.0325415-UTR-Ecto-sp13_S_contig13514:2721..33521681462722.0325415-UTR-Ecto-sp13_S_contig13514:2721..3352Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13514 2722..3352 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462722.019333-CDS-Ecto-sp13_S_contig13514:2184..27211681462722.019333-CDS-Ecto-sp13_S_contig13514:2184..2721Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13514 2185..2721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13514.2797.1prot_Ecto-sp13_S_contig13514.2797.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13514 2185..2721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13514.2797.1

>prot_Ecto-sp13_S_contig13514.2797.1 ID=prot_Ecto-sp13_S_contig13514.2797.1|Name=mRNA_Ecto-sp13_S_contig13514.2797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=179bp
MFLGDTFNQPIEDVVWPPGLERLSLPGYDHPIDNVRWPPALKSLEFTPPL
QISIRESPYSNFDDLTFSRSRFNSRFTTLPASLETLWLGDAFRQSLLGVN
WPSGLATLGLGVDLTGEWGLSWPSILRNLYLAKNMYDWVERPPSGCTVSI
MPALDTDEDEDDYGMLGELDGIRCNASV*
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mRNA from alignment at Ecto-sp13_S_contig13514:1978..3352+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13514.2797.1 ID=mRNA_Ecto-sp13_S_contig13514.2797.1|Name=mRNA_Ecto-sp13_S_contig13514.2797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13514:1978..3352+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACTTGAGGGAGGTGCGATGGCCAGAAGGCACCAAAGAGATTAGTCTGCT CCTCTTCGACAAGCCGATTCAAGAGATAGCGTGGCCGCTGGGGCTGGAGT GCCTGTCATTCTGCGACCTCCGTCTGGACTGGGAGTCACCATGCTGGGAA AAAGACTGGTTCAATCATCCGCTTGATGGGGCAATTTTTCCTTCCGGCCT GCGAGAGATGTTCCTCGGCGACACATTTAACCAGCCCATTGAAGACGTGG TCTGGCCGCCAGGGCTTGAGAGGCTGTCCTTGCCTGGCTACGATCACCCA ATTGACAACGTGAGGTGGCCGCCGGCTCTAAAATCCTTGGAATTTACGCC GCCATTGCAGATTTCAATACGGGAAAGCCCCTACTCCAATTTCGACGACC TCACCTTCAGCCGGAGTCGCTTTAACTCCCGCTTCACTACTTTACCAGCG AGCCTTGAGACCCTTTGGCTTGGTGACGCGTTCAGGCAGTCCCTTTTAGG CGTTAATTGGCCTAGCGGGCTTGCAACATTGGGGCTCGGCGTGGATTTAA CGGGGGAGTGGGGTCTATCGTGGCCGTCGATTCTTCGAAACCTGTATCTT GCAAAAAACATGTACGATTGGGTAGAACGCCCGCCCTCCGGTTGCACGGT TTCTATCATGCCCGCCCTCGATACGGACGAAGATGAGGATGACTATGGCA TGCTCGGCGAGCTCGATGGTATAAGATGTAACGCGAGTGTCTAACACCAG CATGTTGAACGTGGTCAAGGTGGCGGAATTTGGTGCAGTCGAGTCAGTAA CGAATGTAGACGCGAAACGTTTCGGTAGGAAGGCCTGTCAGTTCGATCAG GGCGTTTCGTGACTGTGCGGTATCCGATGTGGGTTCGGTCTTGCAGCTTA CTGGTCCTCTGTTTAAGGGCGAGAGAAGGACAACACCTACGCCGATTTTT ATACGTCATATGGTCGTTTTCATAGCTGCGGTTGGTCGCAGCTTTTTGTT TATCTCTGCGCGGTAACCGTTTGGGTATTGTTAGATGTCGAATCCTACAA ACCTCTTTTAATTTTCGTCGGATGTTGGAATCCTGCTGTTGTGTGTCTTG CTGTGTTGGTTTGCACCCACTGGTTGGCAGAATGTTTTTAGTTCTCGCGC TTAAGAAGCACTCGCAGCCGGTGTTCGATCCGCATTCTGAAAGTGAATTT CAGTCTCGAACTTGGTGCAGTTCAGCAGGGACTTTGACGGGAGTCGAAAA CGGTAGGTGGGTTTCCTTGCGAGGAGCCACAGCTGCTAGCAGCTTAAGAG AACTTTTTTTAACGTTTTTTGACGGAAATAATTGGTATTTCATTGTAGGA GAATGACAGAGCACCACGTCGATGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13514:1978..3352+

>mRNA_Ecto-sp13_S_contig13514.2797.1 ID=mRNA_Ecto-sp13_S_contig13514.2797.1|Name=mRNA_Ecto-sp13_S_contig13514.2797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=537bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13514:1978..3352+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCCTCGGCGACACATTTAACCAGCCCATTGAAGACGTGGTCTGGCC
GCCAGGGCTTGAGAGGCTGTCCTTGCCTGGCTACGATCACCCAATTGACA
ACGTGAGGTGGCCGCCGGCTCTAAAATCCTTGGAATTTACGCCGCCATTG
CAGATTTCAATACGGGAAAGCCCCTACTCCAATTTCGACGACCTCACCTT
CAGCCGGAGTCGCTTTAACTCCCGCTTCACTACTTTACCAGCGAGCCTTG
AGACCCTTTGGCTTGGTGACGCGTTCAGGCAGTCCCTTTTAGGCGTTAAT
TGGCCTAGCGGGCTTGCAACATTGGGGCTCGGCGTGGATTTAACGGGGGA
GTGGGGTCTATCGTGGCCGTCGATTCTTCGAAACCTGTATCTTGCAAAAA
ACATGTACGATTGGGTAGAACGCCCGCCCTCCGGTTGCACGGTTTCTATC
ATGCCCGCCCTCGATACGGACGAAGATGAGGATGACTATGGCATGCTCGG
CGAGCTCGATGGTATAAGATGTAACGCGAGTGTCTAA
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