mRNA_Ecto-sp13_S_contig13514.2797.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13514.2797.1 vs. uniprot
Match: A0A6H5JJV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV6_9PHAE) HSP 1 Score: 199 bits (505), Expect = 1.160e-55 Identity = 127/240 (52.92%), Postives = 149/240 (62.08%), Query Frame = 1
Query: 1 DLREVRWPEGTKEISLLLFDKPIQEIAWPLGLECLSFCDLRLDWESPC--W---EKDWFNHPLDGAIFPSGLREMFLGDTXXXXXXXXXXXXXXERLSLPGYDHXXXXXXXXXXXKSLEFTPPLQISIRESPYSNFDDLTFSRSRFNSRFTTLPASLETLWLGDAFRQSLLGVNWPSGLATLGLGVDLTGEWGLSWPSIL-RNLYLAKNMYDWVERPPSGCTVSIMPALDTDEDEDDYGM 702
D EV+WPEGT+EISL+LFDKP++ +AWPLGLECLSFC LR S C W ++ FN L GA FP+GLRE+FLGD ERLSLPG + XXXXXXXXXXXKSLEFT PLQI +RE P + D+L F+S FTTLPASLETLWLGD F QSL VNWP RNLYL + + DWVERPPSGC V+++ D D+D Y +
Sbjct: 130 DFNEVQWPEGTREISLILFDKPVEGMAWPLGLECLSFCALR----SGCGAWHVSDRGSFNRSLVGANFPAGLREIFLGDAFDQPIEDVVWPQGLERLSLPGCNXXXXXXXXXXXXKSLEFTSPLQICLREDPNTRLDELDLV-GVFDSPFTTLPASLETLWLGDEFGQSLESVNWPXXXXXXXXXXXXXXXXXXXXXXXXXRNLYLVREV-DWVERPPSGCKVTVVK---DDPDDDMYDV 360
BLAST of mRNA_Ecto-sp13_S_contig13514.2797.1 vs. uniprot
Match: A0A6H5JNP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP2_9PHAE) HSP 1 Score: 181 bits (460), Expect = 5.540e-49 Identity = 118/228 (51.75%), Postives = 137/228 (60.09%), Query Frame = 1
Query: 1 DLREVRWPEGTKEISLLLFDKPIQEIAWPLGLECLSFCDLRLDW-ESPCWEKDWFNHPLDGAIFPSGLREMFLGDTXXXXXXXXXXXXXXERLSLPGYDHXXXXXXXXXXXKSLEFTPPLQISIRESPYSNFDDLTFSRSRFNSRFTTLPASLETLWLGDAFRQSLLGVNWPSGLATLGLGVDLTGEWGLSWPSIL-RNLYLAKNMYDWVERPPSGCTVSIMPALDTD 678
D EV+WPEG KE++LL FDK ++ +AWP GLECLSFC LRL S + FN L GA FPSGLRE+FLGD ERLSLPG + XXXXXXXXXXXKSLEF+PP QI +RE P + D L R RFNS FT LPASLE LWLG+ F QSL GVNWPS +NLYL M DW+E P S C ++I+ DT+
Sbjct: 130 DFDEVQWPEGIKEVNLLSFDKEVEGVAWPKGLECLSFCALRLRCGPSGFANRGSFNRSLVGANFPSGLREIFLGDAFDQPIEDVVWPQGLERLSLPGCNXXXXXXXXXXXXKSLEFSPPSQICLREDPNTRLDVLEPHRDRFNSPFTKLPASLEALWLGNNFCQSLEGVNWPSXXXXXXXXXXXXXXXXXXXXXXXXQNLYLVNEM-DWLEYPES-CMLTIVKDYDTE 355
BLAST of mRNA_Ecto-sp13_S_contig13514.2797.1 vs. uniprot
Match: D8LHT8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHT8_ECTSI) HSP 1 Score: 166 bits (421), Expect = 6.450e-44 Identity = 112/228 (49.12%), Postives = 131/228 (57.46%), Query Frame = 1
Query: 1 DLREVRWPEGTKEISLLLFDKPIQEIAWPLGLECLSFCDLRLDWESPCW-EKDWFNHPLDGAIFPSGLREMFLGDTXXXXXXXXXXXXXXERLSLPGYDHXXXXXXXXXXXKSLEFTPPLQISIRESPYSNFDDLTFSRSRFNSRFTTLPASLETLWLGDAFRQSLLGVNWPSGLATLGLGVDLTGEWGLSWPSIL-RNLYLAKNMYDWVERPPSGCTVSIMPALDTD 678
DL EV+WPEG KE++LLLFD I+ +AWP GLE LSFC LRL + S + + FN L GA FPS LRE+FLGD ERLS PG + XXXXXXXXXXX F+PP QI +RE P + D L R RFNS FT LPASLE LWLG+ F QSL GVNW +NLYL M DW+E P S C V+I+ DT+
Sbjct: 73 DLSEVQWPEGIKEVNLLLFDGDIEGVAWPAGLERLSFCALRLSYGSSGFANRGSFNRSLVGANFPSDLREIFLGDAFDQPIEDVVWPSGLERLSFPGCNXXXXXXXXXXXXXXXXFSPPSQICLREDPNTRLDVLEPHRDRFNSPFTNLPASLEALWLGNNFCQSLEGVNWXXXXXXXXXXXXXXXXXXXXXXXXXXQNLYLVNEM-DWLEYPKS-CMVTIVKDYDTE 298
BLAST of mRNA_Ecto-sp13_S_contig13514.2797.1 vs. uniprot
Match: A0A6H5JK73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK73_9PHAE) HSP 1 Score: 140 bits (353), Expect = 2.110e-34 Identity = 98/232 (42.24%), Postives = 120/232 (51.72%), Query Frame = 1
Query: 1 DLREVRWPEGTKEISLLLFDKPIQEIAWPLGLECLSFCDLRLDWES-PCWEKDWFNHPLDGA--IFPSGLREMFLGDTXXXXXXXXXXXXXXERLSLPGYDHXXXXXXXXXXXKSLEFTPPLQISIRESPYSNFDDLTFSRSRFNSRFTTLPASLETLWLGDAFRQSLLGVNWPSGLATLGLGVDLTGEWGLSWPSIL-RNLYLAKNMYDWVERPPSGCTVSIMPALDTDED 684
DLR+V WPEGTKE++L+LFDK + WP+ LE LSF R +S + F L GA FPSGLR++FLG +RLS+P + XXXXXXXX PP +I + E P + D+L RFN FT LPASLETLWLGD F SL G+NWP RNL L + + +W+ERPPSGC V I D D D
Sbjct: 42 DLRDVHWPEGTKEVALILFDKAFEGATWPVSLERLSFYAFRSGGQSYRVKDIGSFKLSLVGANFSFPSGLRDIFLGAAFDQPIQDVVWPQGLQRLSVPRFXXXXXXXXXXPA-----LNPPWEIRLTEDPNTRLDELGSYWDRFNCPFTHLPASLETLWLGDKFDHSLEGINWPXXXXXXXXXXXXXXXXXXXXXXXXXRNLCLLREV-NWIERPPSGCKVIIAQEDDLDND 267
BLAST of mRNA_Ecto-sp13_S_contig13514.2797.1 vs. uniprot
Match: A0A6H5JPY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPY0_9PHAE) HSP 1 Score: 126 bits (316), Expect = 2.570e-29 Identity = 85/224 (37.95%), Postives = 109/224 (48.66%), Query Frame = 1
Query: 1 DLREVRWPEGTKEISLLLFDKPIQEIAWPLGLECLSFCDLRLDWESPCWEKDWFNHPLDGAIFPSGLREMFLGDTXXXXXXXXXXXXXXERLSLPGYDHXXXXXXXXXXXKSLEFTPPLQISIRESPYSNFDDLTFSRSRFNSRFTTLPASLETLWLGDAFRQSLLGVNWPSGLATLGLGVDLTGEWGLSWPSILRNLYLAKNMYDWVERPPSGCTVSIMPALD 672
DL EV+WPEG KEI LLL D+ I+ + W W + + P FPS + G + L LPG D KSLE + P ++ + E+P +N + F+S FTTLPASL TLWLGD+F QSL V WPSGL TLGLG L+ +SW S LRNLYL + +W E PP GC V+++ D
Sbjct: 59 DLSEVQWPEGIKEIDLLLLDEVIEGMLW---------------WVWSAFHSARSDFPTSFYYFPS---KTLCGHKDLR-----------DCLYLPGCDQPIDNLWWAPALKSLESSTPSEVRLMETPNTNLHEPRLV-GVFDSPFTTLPASLATLWLGDSFCQSLEDVTWPSGLVTLGLGSTLSEFDSVSWSSNLRNLYLVDEI-EWAEYPP-GCRVNVVMDFD 250 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13514.2797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13514.2797.1 >prot_Ecto-sp13_S_contig13514.2797.1 ID=prot_Ecto-sp13_S_contig13514.2797.1|Name=mRNA_Ecto-sp13_S_contig13514.2797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=179bp MFLGDTFNQPIEDVVWPPGLERLSLPGYDHPIDNVRWPPALKSLEFTPPLback to top mRNA from alignment at Ecto-sp13_S_contig13514:1978..3352+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13514.2797.1 ID=mRNA_Ecto-sp13_S_contig13514.2797.1|Name=mRNA_Ecto-sp13_S_contig13514.2797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13514:1978..3352+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13514:1978..3352+ >mRNA_Ecto-sp13_S_contig13514.2797.1 ID=mRNA_Ecto-sp13_S_contig13514.2797.1|Name=mRNA_Ecto-sp13_S_contig13514.2797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=537bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13514:1978..3352+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |