mRNA_Ecto-sp13_S_contig13510.2796.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13510.2796.1
Unique NamemRNA_Ecto-sp13_S_contig13510.2796.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13510.2796.1 vs. uniprot
Match: D8LL47_ECTSI (Leucine carboxyl methyltransferase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL47_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 5.170e-6
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 3 
Query:    3 CMEKLVLEFIGTSPSHPSSVPQHIR 77
            CMEKLVLEFIGTSPSHPSSVP H+R
Sbjct:   76 CMEKLVLEFIGTSPSHPSSVPHHVR 100
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13510.2796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LL47_ECTSI5.170e-692.00Leucine carboxyl methyltransferase 1 n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13510contigEcto-sp13_S_contig13510:2393..3286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size361
Hectar predicted targeting categorymitochondrion
Exons2
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462721.9403229-CDS-Ecto-sp13_S_contig13510:2392..24701681462721.9403229-CDS-Ecto-sp13_S_contig13510:2392..2470Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13510 2393..2470 +
1681462721.9545665-CDS-Ecto-sp13_S_contig13510:3005..32841681462721.9545665-CDS-Ecto-sp13_S_contig13510:3005..3284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13510 3006..3284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13510.2796.1prot_Ecto-sp13_S_contig13510.2796.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13510 2393..3284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13510.2796.1

>prot_Ecto-sp13_S_contig13510.2796.1 ID=prot_Ecto-sp13_S_contig13510.2796.1|Name=mRNA_Ecto-sp13_S_contig13510.2796.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
LVWRSSCWSSSVPRRVIPHQYLNTSETSLQLLLGRRCSPISRRVLKELPQ
EWYLEGGDTISCWAVPRFGAVMCRMRRRKTFVLTYDRQRPRAVSASLVCW
TATGLVFHPQLREGGSNSK
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mRNA from alignment at Ecto-sp13_S_contig13510:2393..3286+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13510.2796.1 ID=mRNA_Ecto-sp13_S_contig13510.2796.1|Name=mRNA_Ecto-sp13_S_contig13510.2796.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=894bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13510:2393..3286+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGTATGGAGAAGCTCGTGCTGGAGTTCATCGGTACCTCGCCGAGTCAT
CCCTCATCAGTACCTCAACACATCAGAGGTACGGAAATGTACTGTGATTT
TTGTCGATTGCTTCTGGTGCGTTTGGTAGTTTACGGCCAAGTCACATCCA
CTCGACCAACTCGAACGAGACCAATGACTCTGCAGGCGGGAGACTACGGA
GATTCTCATGTCCCTTGATAAGGTGGTGCTGATATCGTGATGTAAGAGTG
TCACCCGCGCTCGGCTAGGACGCGTCATTTTCAGGGTTGAAGGTGTTGAA
CACAAACGACCCGCAGCAGTGGGGGGAGAGCCTGTGCAAGCGCTATATTT
CTGTCACCCGGCTTCGTTGTCGCCGCCGTCACACCGCTATTTATGCGAGC
AGAATGTTGCAGAAATGACAAAGTTTCAAAGCATTTTTTTGCAACTATTC
TTACGTATGCTCTTTCTGGGAGCAAAAGCCTGCGAACCGAGGCGAAAAGC
TGCAATCTGCTGCAAAAATTCTGTAGCTTTTTTCGCGACGAAGGTGTCGA
AAAAAAGTTCCGCGGCGAGACTTGCCAATTCACGTCAAGCTGCTACCCCA
ACCCCGCACGTAGACCTCTCTTCAGCTTCTATTGGGAAGGCGGTGTTCAC
CGATATCTCGACGGGTACTGAAAGAGTTACCTCAGGAATGGTATCTGGAA
GGAGGTGATACCATAAGCTGTTGGGCAGTACCAAGGTTTGGTGCCGTCAT
GTGCCGAATGCGCCGGAGAAAAACGTTTGTGCTGACGTACGACCGTCAAC
GACCGCGAGCGGTTAGTGCAAGTTTGGTGTGTTGGACCGCCACGGGTTTG
GTTTTCCACCCACAACTTCGCGAAGGAGGAAGCAACAGCAAAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13510:2393..3286+

>mRNA_Ecto-sp13_S_contig13510.2796.1 ID=mRNA_Ecto-sp13_S_contig13510.2796.1|Name=mRNA_Ecto-sp13_S_contig13510.2796.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13510:2393..3286+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGTATGGAGAAGCTCGTGCTGGAGTTCATCGGTACCTCGCCGAGTCAT
CCCTCATCAGTACCTCAACACATCAGAGACCTCTCTTCAGCTTCTATTGG
GAAGGCGGTGTTCACCGATATCTCGACGGGTACTGAAAGAGTTACCTCAG
GAATGGTATCTGGAAGGAGGTGATACCATAAGCTGTTGGGCAGTACCAAG
GTTTGGTGCCGTCATGTGCCGAATGCGCCGGAGAAAAACGTTTGTGCTGA
CGTACGACCGTCAACGACCGCGAGCGGTTAGTGCAAGTTTGGTGTGTTGG
ACCGCCACGGGTTTGGTTTTCCACCCACAACTTCGCGAAGGAGGAAGCAA
CAGCAAA
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