mRNA_Ecto-sp13_S_contig1351.2795.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1351.2795.1
Unique NamemRNA_Ecto-sp13_S_contig1351.2795.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1351.2795.1 vs. uniprot
Match: D7G6W1_ECTSI (Spindle pole body component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W1_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 9.540e-5
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 1 
Query:    1 KAYMKGILARAMLNEESTDVKNKVEEV 81
            KAYMKGILARAMLNEESTDVKNKVEEV
Sbjct:  753 KAYMKGILARAMLNEESTDVKNKVEEV 779
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1351.2795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6W1_ECTSI9.540e-5100.00Spindle pole body component n=2 Tax=Ectocarpus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1351contigEcto-sp13_S_contig1351:12644..13481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size838
Hectar predicted targeting categoryother localisation
Exons1
Cds size483
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462721.7809052-UTR-Ecto-sp13_S_contig1351:12643..126521681462721.7809052-UTR-Ecto-sp13_S_contig1351:12643..12652Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1351 12644..12652 +
1681462721.8026745-UTR-Ecto-sp13_S_contig1351:13135..134811681462721.8026745-UTR-Ecto-sp13_S_contig1351:13135..13481Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1351 13136..13481 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462721.7921336-CDS-Ecto-sp13_S_contig1351:12652..131351681462721.7921336-CDS-Ecto-sp13_S_contig1351:12652..13135Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1351 12653..13135 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1351.2795.1prot_Ecto-sp13_S_contig1351.2795.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1351 12653..13135 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1351.2795.1

>prot_Ecto-sp13_S_contig1351.2795.1 ID=prot_Ecto-sp13_S_contig1351.2795.1|Name=mRNA_Ecto-sp13_S_contig1351.2795.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp
MKGILARAMLNEESTDVKNKVEEVSTDWPASLSRRSFLVLFSLFSNLPYW
VCGIVNLAASWLLTTFRRRQQELPPKVVEPAYYNGTTHVVSFYRNYFRRS
RVSYASPCHSPQRVYKVYFGSCKMDVPALCMLPLPTVLLFPAKTNFTTIL
PLYSVMLSRT*
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mRNA from alignment at Ecto-sp13_S_contig1351:12644..13481+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1351.2795.1 ID=mRNA_Ecto-sp13_S_contig1351.2795.1|Name=mRNA_Ecto-sp13_S_contig1351.2795.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=838bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1351:12644..13481+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGCCTACATGAAAGGCATCCTTGCCAGGGCTATGCTGAACGAAGAGAG
CACGGACGTGAAGAACAAGGTGGAGGAGGTTAGTACGGACTGGCCAGCCT
CTCTCTCGCGGAGGTCTTTTTTGGTGTTGTTTTCTCTCTTTTCGAACCTC
CCGTATTGGGTGTGTGGAATTGTGAATCTTGCTGCTTCGTGGCTGCTCAC
TACTTTTCGGCGCCGCCAACAGGAGTTGCCTCCAAAAGTGGTGGAACCTG
CGTACTACAACGGAACTACGCATGTTGTATCTTTCTATAGAAACTATTTT
CGGCGTTCGCGAGTATCATATGCTTCTCCGTGCCACTCTCCTCAACGTGT
TTACAAGGTGTATTTTGGGAGTTGTAAGATGGATGTGCCTGCGTTGTGCA
TGCTCCCGCTCCCGACAGTTCTGCTGTTTCCTGCCAAGACCAATTTCACT
ACCATACTACCACTATATTCCGTGATGCTATCGAGGACCTGAGGTATTTC
TTTGTTGCCGACCGCCCGGGTGACGTGATACCATTCAGCACCATAAGCAG
CCGTGATGTCATGTTTGTGTGACAACGAACGAAATTGGTGTAGCTGATTT
GAAAACGGTTGGAGTGTTTTCATAGATTTACGGTTTGTCGTGTTTTCTGT
GCAATGGTTTAAATCGAGCCGACTGGATCGCCTCCGTTTTGTCCCTGAAA
ACGACTTTCGGTCGGTGGATGCTTTGAAAATGTTTGGTGTAAGAGAGGCA
TTCGTTATTGTTGTGGTCGTCTCTGCGACATGAACCATCTCCATACGCTT
TGGTTGCATCTACTAGTCTACTGGTCCACGACAAGTCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1351:12644..13481+

>mRNA_Ecto-sp13_S_contig1351.2795.1 ID=mRNA_Ecto-sp13_S_contig1351.2795.1|Name=mRNA_Ecto-sp13_S_contig1351.2795.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1351:12644..13481+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAAGGCATCCTTGCCAGGGCTATGCTGAACGAAGAGAGCACGGACGT
GAAGAACAAGGTGGAGGAGGTTAGTACGGACTGGCCAGCCTCTCTCTCGC
GGAGGTCTTTTTTGGTGTTGTTTTCTCTCTTTTCGAACCTCCCGTATTGG
GTGTGTGGAATTGTGAATCTTGCTGCTTCGTGGCTGCTCACTACTTTTCG
GCGCCGCCAACAGGAGTTGCCTCCAAAAGTGGTGGAACCTGCGTACTACA
ACGGAACTACGCATGTTGTATCTTTCTATAGAAACTATTTTCGGCGTTCG
CGAGTATCATATGCTTCTCCGTGCCACTCTCCTCAACGTGTTTACAAGGT
GTATTTTGGGAGTTGTAAGATGGATGTGCCTGCGTTGTGCATGCTCCCGC
TCCCGACAGTTCTGCTGTTTCCTGCCAAGACCAATTTCACTACCATACTA
CCACTATATTCCGTGATGCTATCGAGGACCTGA
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