mRNA_Ecto-sp13_S_contig13502.2789.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13502.2789.1
Unique NamemRNA_Ecto-sp13_S_contig13502.2789.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13502.2789.1 vs. uniprot
Match: D8LN64_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN64_ECTSI)

HSP 1 Score: 404 bits (1039), Expect = 5.380e-141
Identity = 194/199 (97.49%), Postives = 196/199 (98.49%), Query Frame = 1
Query:    1 IGCALYDMGGGGDTLVGRGDAIPDGDGPIYVCTRNDDLEDVISRTPPARREDLVFLQNGVLGPLLEKHGLAKNTQALIYFAVSKKGEAPIDGITDANPEGLTSTCGKWAGEFKERLAKGGLTCHELAEDRYTARMYEKHIWICAFMVAGAAHKCNMGQVDAEHADEVRTLIGELQKAIEVEYGVAFEDGVKERLCAYSR 597
            IGCALYDMGGGGDTLVGRGD IPDGDGPIYVCTRNDDLEDVISRTPPARREDLVFLQNGVLGPLLEKHGLAKNTQALIYFAVSKKGE PIDGITDANPEGLTSTCGKWAGE KERLAKGGLTCHELAEDRYTARMYEKHIWICAFMVAGAAHKCNMGQVDA+HADEVRTLIGELQKAIEVEYGVAFEDGVK+RLCAYSR
Sbjct:   64 IGCALYDMGGGGDTLVGRGDIIPDGDGPIYVCTRNDDLEDVISRTPPARREDLVFLQNGVLGPLLEKHGLAKNTQALIYFAVSKKGEPPIDGITDANPEGLTSTCGKWAGELKERLAKGGLTCHELAEDRYTARMYEKHIWICAFMVAGAAHKCNMGQVDADHADEVRTLIGELQKAIEVEYGVAFEDGVKDRLCAYSR 262          
BLAST of mRNA_Ecto-sp13_S_contig13502.2789.1 vs. uniprot
Match: A0A835YGX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGX2_9STRA)

HSP 1 Score: 276 bits (707), Expect = 2.720e-91
Identity = 129/199 (64.82%), Postives = 155/199 (77.89%), Query Frame = 1
Query:    1 IGCALYDMGGGGDTLVGRGDAIPDGDGPIYVCTRNDDLEDVISRTPPARREDLVFLQNGVLGPLLEKHGLAKNTQALIYFAVSKKGEAPIDGITDANPEGLTSTCGKWAGEFKERLAKGGLTCHELAEDRYTARMYEKHIWICAFMVAGAAHKCNMGQVDAEHADEVRTLIGELQKAIEVEYGVAFEDGVKERLCAYSR 597
            IG ALY+MG G DTLVGR   IPDG GPIYVCTRNDDLE+VI RTPP+RR+DLVFLQNG+LGP L KHGL+ N+QALIYFAV+K+GE PIDG+TD NPEGLT+  GKWA  FKERL+ GGL+CH L    +TA+ +EKHIWICAFM+ G  H  ++G+V++ H +EVR LI EL  A   +YG  F  G  +RLCAY+R
Sbjct:   10 IGNALYEMGDGTDTLVGRSTTIPDGQGPIYVCTRNDDLENVILRTPPSRRDDLVFLQNGILGPFLAKHGLSNNSQALIYFAVAKQGEKPIDGVTDVNPEGLTAATGKWAPAFKERLSTGGLSCHILNTTEFTAQSFEKHIWICAFMLVGVKHGASVGEVESTHGEEVRRLIDELLAATAAKYGARFRAGAPDRLCAYAR 208          
BLAST of mRNA_Ecto-sp13_S_contig13502.2789.1 vs. uniprot
Match: A0A7S3S3A4_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3S3A4_9SPIT)

HSP 1 Score: 228 bits (581), Expect = 1.850e-71
Identity = 116/202 (57.43%), Postives = 138/202 (68.32%), Query Frame = 1
Query:    1 IGCALYDMGGGGDTLVGRGDAIPD--GDGPIYVCTRNDDLEDVISRTPPARREDLVFLQNGVLGPLLEKHGLAKNTQALIYFAVSKKGEAPIDGITDANPEGLTSTCGKWAGEFKERLAKGGLTCHELAEDRYTARMYEKHIWICAFMVAGAAHK-CNMGQVDAEHADEVRTLIGELQKAIEVEYGVAFEDGVKERLCAYSR 597
            IG  L D+G  GD LV RG+ IPD    GPIYVCTRND L  +I  TPP RREDLVFLQNG+LG  LE  GL   +Q L+Y AV+K GE P DGITD NPEGLTS  GKWAG F  RL KGGLTCH  A D Y   M EKH+WICAFM+ GA +    +G+V+++H+D++R ++ EL  A E E GV  +DG  +RL AY R
Sbjct:   62 IGSLLLDLGVEGDVLVKRGEPIPDIPESGPIYVCTRNDALAGIIESTPPNRREDLVFLQNGMLGDFLEAQGLPDASQVLVYLAVAKLGEKPTDGITDTNPEGLTSATGKWAGAFAARLKKGGLTCHVRAGDDYKKAMLEKHVWICAFMLTGALNGGITVGEVESKHSDQLRAIVDELCAAGEAELGVKLDDGAFDRLAAYGR 263          
BLAST of mRNA_Ecto-sp13_S_contig13502.2789.1 vs. uniprot
Match: A0A4D9D7H8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7H8_9STRA)

HSP 1 Score: 223 bits (567), Expect = 2.100e-70
Identity = 105/187 (56.15%), Postives = 140/187 (74.87%), Query Frame = 1
Query:   43 LVGRGDAIP-DGDGPIYVCTRNDDLEDVISRTPPARREDLVFLQNGVLGPLLEKHGLAKNTQALIYFAVSKKGEAPIDGITDANPEGLTSTCGKWAGEFKERLAKGGLTCHELAEDRYTARMYEKHIWICAFMVAGAAHK-CNMGQVDAEHADEVRTLIGELQKAIEVEYGVAFEDGVKERLCAYSR 597
            +VGR D +P +G GPIYV TRNDDL  V+ +TP ARR+DLVFLQNG+LGP L+K+GL  NTQAL+YFAV++KG+ P DG+TD NP GLT+  G+WA +F+E L K GL CH L + R+ A M+EK +WI AFM+ G+ H    +G+V+  H ++V  LI EL+KA+E    V F+DGV++RLCAY+R
Sbjct:    1 MVGRNDPVPVEGTGPIYVATRNDDLAAVVEKTPEARRKDLVFLQNGMLGPFLKKYGLEDNTQALVYFAVARKGDVPTDGVTDLNPNGLTAVYGEWAADFEETLTKAGLKCHMLDKGRFQAAMFEKLMWISAFMLVGSVHGGITVGEVEKSHREDVVALIQELKKALERHAKVTFQDGVEDRLCAYAR 187          
BLAST of mRNA_Ecto-sp13_S_contig13502.2789.1 vs. uniprot
Match: C1EBF6_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EBF6_MICCC)

HSP 1 Score: 223 bits (567), Expect = 5.420e-70
Identity = 118/202 (58.42%), Postives = 137/202 (67.82%), Query Frame = 1
Query:    1 IGCALYDMGGGGDTLVGRGDAIP--DGDGPIYVCTRNDDLEDVISRTPPARREDLVFLQNGVLGPLLEKHGLAKNTQALIYFAVSKKGEAPIDGITDANPEGLTSTCGKWAGEFKERLAKGGLTCHELAEDRYTARMYEKHIWICAFMVAGAAHK-CNMGQVDAEHADEVRTLIGELQKAIEVEYGVAFEDGVKERLCAYSR 597
            +G AL DMG  GD ++ RGDA P     GPIYVCTRND L+ VI +TPP RR DLVFLQNG+L P L+  GL  NTQALIYFAV+K GE P DGITD NPEGLT+  GK A   + RLA GG+ CH L +D + A M+EK IWICAFM  GAAH    +G V++ H  EV  LI EL +    E GV FE G  ERLCAY+R
Sbjct:   15 VGQALADMGVPGDVIMKRGDAFPAEPSTGPIYVCTRNDALQGVIDQTPPERRADLVFLQNGMLQPWLDARGLGDNTQALIYFAVAKFGEKPTDGITDVNPEGLTAANGKHAAALQARLAAGGMRCHVLDDDAFKASMFEKLIWICAFMAVGAAHPGATVGDVESTHRAEVVELIEELLEGSAAEKGVKFEPGSVERLCAYAR 216          
BLAST of mRNA_Ecto-sp13_S_contig13502.2789.1 vs. uniprot
Match: R1G2T3_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1G2T3_EMIHU)

HSP 1 Score: 223 bits (567), Expect = 6.530e-70
Identity = 114/202 (56.44%), Postives = 137/202 (67.82%), Query Frame = 1
Query:    1 IGCALYDMGGGGDTLVGRGDAIP--DGDGPIYVCTRNDDLEDVISRTPPARREDLVFLQNGVLGPLLEKHGLAKNTQALIYFAVSKKGEAPIDGITDANPEGLTSTCGKWAGEFKERLAKGGLTCHELAEDRYTARMYEKHIWICAFMVAGAAHK-CNMGQVDAEHADEVRTLIGELQKAIEVEYGVAFEDGVKERLCAYSR 597
            IG AL ++G  GD ++ RGDA P     GPIYV TRNDDL  V++ TPP RR+DLVFLQNG+LG  LE+ GL   TQ L+Y AV+K GE PIDGITD NP+GLT+  G+WA  F+ RLA GGLTCH    D YT  M EKH+WICAFMV GA H    +G+V++ HA ++R L+ EL  A E   GV  E G  ERL AY R
Sbjct:   16 IGSALKELGVEGDVVLRRGDAFPAAPASGPIYVTTRNDDLAGVVAATPPERRQDLVFLQNGMLGEFLEEQGLPDATQVLLYLAVAKLGEPPIDGITDTNPDGLTTAKGRWAEAFRARLAGGGLTCHVKQGDEYTKAMLEKHVWICAFMVTGALHGGVTVGEVESAHASQLRALVDELCAAGEAALGVRLEPGAFERLAAYGR 217          
BLAST of mRNA_Ecto-sp13_S_contig13502.2789.1 vs. uniprot
Match: C1MVB8_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MVB8_MICPC)

HSP 1 Score: 223 bits (567), Expect = 6.950e-70
Identity = 115/202 (56.93%), Postives = 136/202 (67.33%), Query Frame = 1
Query:    1 IGCALYDMGGGGDTLVGRGDAIPDGD--GPIYVCTRNDDLEDVISRTPPARREDLVFLQNGVLGPLLEKHGLAKNTQALIYFAVSKKGEAPIDGITDANPEGLTSTCGKWAGEFKERLAKGGLTCHELAEDRYTARMYEKHIWICAFMVAGAAHK-CNMGQVDAEHADEVRTLIGELQKAIEVEYGVAFEDGVKERLCAYSR 597
            +G AL+DMG  GD +V RGDA P     GPIYVCTRND L+ V+  TP ARR+DLVFLQNG+L P L+  GL  NTQAL+YFAV+K  E P DGITDANPEGLT+  G+WA  F  RL  GGL CH L +D + A M+EK IWICAFM  GAAH    +G V++ H +EV  LI EL    E   GV F +G   RL AY+R
Sbjct:   23 VGQALFDMGVDGDVIVKRGDAFPSSPATGPIYVCTRNDALQGVVDATPEARRKDLVFLQNGMLQPWLDARGLGGNTQALVYFAVAKMNEKPTDGITDANPEGLTAANGEWADAFAARLRSGGLRCHVLDDDAFRASMFEKLIWICAFMGVGAAHPGATVGDVESAHKEEVEALIAELVAGSESAKGVRFAEGTIPRLAAYAR 224          
BLAST of mRNA_Ecto-sp13_S_contig13502.2789.1 vs. uniprot
Match: W7U5Z5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U5Z5_9STRA)

HSP 1 Score: 223 bits (568), Expect = 1.230e-69
Identity = 109/201 (54.23%), Postives = 145/201 (72.14%), Query Frame = 1
Query:    1 IGCALYDMGGGGDTLVGRGDAIP-DGDGPIYVCTRNDDLEDVISRTPPARREDLVFLQNGVLGPLLEKHGLAKNTQALIYFAVSKKGEAPIDGITDANPEGLTSTCGKWAGEFKERLAKGGLTCHELAEDRYTARMYEKHIWICAFMVAGAAHK-CNMGQVDAEHADEVRTLIGELQKAIEVEYGVAFEDGVKERLCAYSR 597
            +G AL  M G    +VGR D +P +G GPIYV TRNDDL  V+ +TP ARR+DLVFLQNG+LGP L+ +GL  NTQAL+YFAV++KG+ P DG+TD NP GLT+  G+WA +F+E L K GL CH L + R+ A M+EK +WI AFM+ G+ H    +G+V+  H ++V  LI EL+KA+E    V F+DGV++RLCAY+R
Sbjct:   55 VGEALGKMLGSSTVMVGRNDPVPIEGTGPIYVATRNDDLAAVVEKTPEARRKDLVFLQNGMLGPFLKTYGLEDNTQALVYFAVARKGDVPTDGVTDLNPNGLTAVYGEWATDFEETLTKAGLKCHILDKGRFQAAMFEKLMWISAFMLVGSVHGGITVGEVEKSHREDVVALIQELKKALERHAKVTFQDGVEDRLCAYAR 255          
BLAST of mRNA_Ecto-sp13_S_contig13502.2789.1 vs. uniprot
Match: A0A6I9QFA0_ELAGV (uncharacterized protein LOC105034880 n=5 Tax=Arecaceae TaxID=4710 RepID=A0A6I9QFA0_ELAGV)

HSP 1 Score: 220 bits (561), Expect = 1.360e-68
Identity = 111/201 (55.22%), Postives = 137/201 (68.16%), Query Frame = 1
Query:    1 IGCALYDMGGGGDTLVGRGDAIP-DGDGPIYVCTRNDDLEDVISRTPPARREDLVFLQNGVLGPLLEKHGLAKNTQALIYFAVSKKGEAPIDGITDANPEGLTSTCGKWAGEFKERLAKGGLTCHELAEDRYTARMYEKHIWICAFMVAGAAHK-CNMGQVDAEHADEVRTLIGELQKAIEVEYGVAFEDGVKERLCAYSR 597
            +G AL DMG GGD LVGRG  +P D DGPI VCTRNDDL+ V+  TPP+R  DLVF QNG+L P L+  GL+   Q L YFA+SK GEAPIDG TD NPEGLT+  GKWA     R+  GGL+C  L ++ +  +M EK IWI AFM+ GA H    +G V+ E+  EV +LI EL  A   E G+ F++G++ERLCAYSR
Sbjct:   54 VGTALRDMGDGGDVLVGRGQPVPADFDGPILVCTRNDDLDAVLDATPPSRWNDLVFFQNGMLDPWLQSKGLSDANQVLAYFAISKLGEAPIDGKTDTNPEGLTAAYGKWASAVATRIHNGGLSCKVLEKEPFQKQMLEKLIWISAFMLVGARHPGATVGAVEKEYRTEVASLIAELASAAAAEKGIVFDEGIEERLCAYSR 254          
BLAST of mRNA_Ecto-sp13_S_contig13502.2789.1 vs. uniprot
Match: A0A0G4FX93_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FX93_VITBC)

HSP 1 Score: 217 bits (552), Expect = 1.010e-67
Identity = 110/200 (55.00%), Postives = 137/200 (68.50%), Query Frame = 1
Query:    1 IGCALYDMGGGGDTLVGRGDAIP-DGDGPIYVCTRNDDLEDVISRTPPARREDLVFLQNGVLGPLLEKHGLAKNTQALIYFAVSKKGEAPIDGITDANPEGLTSTCGKWAGEFKERLAKGGLTCHELAEDRYTARMYEKHIWICAFMVAGAAHKCNMGQVDAEHADEVRTLIGELQKAIEVEYGVAFEDGVKERLCAYSR 597
            IG  LY++GG    LVGR D IP D +GPIYVCTRND L  +I +TP +RREDLVFLQNG+L P L+ + L  NT  LIYFAV+K GE PIDG TD NPEGLT+  GKWA +F   L  G L+C  L +  + A MYEK IWI AFM+ G  +   +G+V+  H  EV  LIGEL++A E   G+ F+DG+ ERLC+Y+R
Sbjct:   14 IGSLLYELGGRSGVLVGRDDPIPADVEGPIYVCTRNDALASIIDKTPASRREDLVFLQNGMLEPFLQSYALQDNTMGLIYFAVAKLGEPPIDGKTDVNPEGLTAVNGKWANDFAALLRNGQLSCKVLEKAVFRASMYEKLIWIAAFMLVGTKYGVTVGEVEQSHRQEVTELIGELKRASEG-LGITFQDGMVERLCSYTR 212          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13502.2789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN64_ECTSI5.380e-14197.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YGX2_9STRA2.720e-9164.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3S3A4_9SPIT1.850e-7157.43Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A4D9D7H8_9STRA2.100e-7056.15Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
C1EBF6_MICCC5.420e-7058.42Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
R1G2T3_EMIHU6.530e-7056.44Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
C1MVB8_MICPC6.950e-7056.93Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]
W7U5Z5_9STRA1.230e-6954.23Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A6I9QFA0_ELAGV1.360e-6855.22uncharacterized protein LOC105034880 n=5 Tax=Areca... [more]
A0A0G4FX93_VITBC1.010e-6755.00Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13502contigEcto-sp13_S_contig13502:442..4706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score387.1
Seed ortholog evalue4.8e-105
Seed eggNOG ortholog2880.D8LN64
Model size600
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs28JH7@1,2QRWE@2759
Cds size579
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13502.2789.1prot_Ecto-sp13_S_contig13502.2789.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13502 442..3424 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462721.4119747-CDS-Ecto-sp13_S_contig13502:441..5431681462721.4119747-CDS-Ecto-sp13_S_contig13502:441..543Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13502 442..543 -
1681462721.4226172-CDS-Ecto-sp13_S_contig13502:1223..13321681462721.4226172-CDS-Ecto-sp13_S_contig13502:1223..1332Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13502 1224..1332 -
1681462721.433462-CDS-Ecto-sp13_S_contig13502:1749..19131681462721.433462-CDS-Ecto-sp13_S_contig13502:1749..1913Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13502 1750..1913 -
1681462721.4413228-CDS-Ecto-sp13_S_contig13502:2646..27811681462721.4413228-CDS-Ecto-sp13_S_contig13502:2646..2781Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13502 2647..2781 -
1681462721.4493318-CDS-Ecto-sp13_S_contig13502:3355..34241681462721.4493318-CDS-Ecto-sp13_S_contig13502:3355..3424Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13502 3356..3424 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462721.4573355-UTR-Ecto-sp13_S_contig13502:3424..34271681462721.4573355-UTR-Ecto-sp13_S_contig13502:3424..3427Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13502 3425..3427 -
1681462721.466262-UTR-Ecto-sp13_S_contig13502:4688..47061681462721.466262-UTR-Ecto-sp13_S_contig13502:4688..4706Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13502 4689..4706 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13502.2789.1

>prot_Ecto-sp13_S_contig13502.2789.1 ID=prot_Ecto-sp13_S_contig13502.2789.1|Name=mRNA_Ecto-sp13_S_contig13502.2789.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=193bp
MGGGGDTLVGRGDAIPDGDGPIYVCTRNDDLEDVISRTPPARREDLVFLQ
NGVLGPLLEKHGLAKNTQALIYFAVSKKGEAPIDGITDANPEGLTSTCGK
WAGEFKERLAKGGLTCHELAEDRYTARMYEKHIWICAFMVAGAAHKCNMG
QVDAEHADEVRTLIGELQKAIEVEYGVAFEDGVKERLCAYSR*
back to top

mRNA from alignment at Ecto-sp13_S_contig13502:442..4706-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13502.2789.1 ID=mRNA_Ecto-sp13_S_contig13502.2789.1|Name=mRNA_Ecto-sp13_S_contig13502.2789.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4265bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13502:442..4706- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGGGTGTGCGTTGTATGTGAGTACTTATGAAGACGAGGGTATCATCGC TGAAGTGGGATTCGTTTTTCATCGCAAGTCCCGATAGATTGGGCGCAGTC GGTGTTCACATCGCCTTTTTAGGTTGTTCATGTGTCATGATGGTTCGTCC TCACGTCCTCCCGCGTCGTCCATACAACTCCCGTGAAGGCCAGTAGTTCA GGAGGCACCGCCCGGGGTACATAGGTTCGGTGAGGTCCAACCAACAAATG AGGCGCTGAAGAAGCCTTCATCCCTTCCTAATTACATGTTGCATAGTTTT GGATCTGGGTTGCGCCGTGCTCGTTCCAGATCTACAGTATGTAAACATAA CATGACAGATCCATCATAAGAAATGGGCGCGTATCCTCCAAACTCTGTAC TCATGTCAACTCTTTGAGCGAAGTCAACTCTTTGAGCAAAGCAAGTGCCC ATTGGTTCGCATCCAAGCCCACCCCACGATGTTAGTCGTGGTTTGCATGC CTTCCGCGTGGAACACGCCGCGTGGAACACGGACTTCAAGAAACACACTT TAGCCGTGGTCGAGATGTAATTGCTGCCTGTGGAACGACAGTCAAATCGT ACGTCATGTGGGAGCCTTGTCCAAGTGCGAGACAAGCATCGAACTAACGA ATTGACTAGGTCTCCGAATAACTCGGCCCCTCGGTTGGAACTTGAACAAG ACTGCCGTTGGTCTCGTTGAAAAGGGGGTGTGCCTTGTTTCGTGGGTGGG CTATCGTACGGTACCCGGCAACATCTATCCTGCTAAAATACGCTAAAACG CGCTCGGTTTTGTGTGTGTCACTCTGCACCTCGTCGCGGGCCTAGTAACC CGCACGTGCTTACAGTGGTCCGACCAATAAAGCTTCGCTTCCCACAAATG CTGCCGTCGCATCCAACGCCAACGTATGCTTGTTATTATTTTTTTGTTAC GGGTTGTTTCACGGTAAAAAACGTTGACCTCTAGGTGCTCCGTGCCATCC CGATAACCGGAACGAATGGTCCTGATCACGGCAAACGATCCTAAGATATG ACGAACTTCGTACTACAACACAACCAAGAGACGCAGACAAGGCCAGCAAA AAAATGCGGGAAACGCCAGACGAAACACTGCAAGGCCAAGGGGAAGTTGA GAAAAATGTACCTCATGCTGCAGGAAGGTCACCGTTGCATTATTTCTGTG TGCAACCATAGCGCGGTAACTTGGAGGTTGACTGCCTGATCCTAATATCA CATTTTTTTTCCGTTGTTGGGGAAGACAGGACATGGGCGGCGGCGGGGAC ACCCTGGTCGGACGTGGTGACGCCATCCCCGATGGTGACGGACCGATTTA CGTGAGAAAAAAAAAAAAGTTCTGCGAGCCAGCCGTTGTGAGATTTGGGT CGACAACGTGTACCTCGTTGTCCTGATGCATGGAATGCTGTTCCCGGGAG CTGTTTTTAGCTTTGAACGGATTCATTTGGGTCTTGATGCAACGCGTGTT CGGTGTGCTTCTTGCGCGCGTTTGTTGGATCCGCCAGGCAAGTGTTACTG GTCGGTCACAAGCGTTGTACAGGTGGGCATTGCTTCGTGAAGCACGGCCA AAACCGTCGGGCGATCTGCAAATCTCAAGCCAGAACCCCCGCACCCGCGG TGGACTCGCTCTCTCGATGCCCGCTTAGATCTCATTTTGCTTGTGTATTT GCGTCTTATGATGTATTCCTTATAACGTAGAGGACTAGTTCTTTGTGACT TCGAATCGTGGATCTTCAGGTGTAGCCCAAGGCCGTACACAGGGTAGTTT GGAGCAGAAAGCGGGGGTAGGTAGTCAGTGTACCCGGAAGAAGCAAACAT GGGACATTTTTTTTTTGCGTCAGCGATTGCTCGGTTTCCCTCAACTCTCT TAAATTCGTTCACCTTACTGAAAAGGTTTGCACACGGAACGATGATCTAG AGGACGTAATCTCGCGCACGCCTCCGGCCAGAAGAGAGGACTTGGTTTTC CTGCAGAACGGCGTTTTGGGGCCTTTGCTAGAAAAGCACGGGCTCGCCAA GAACACTCAGGTGGGCGTGCCAACTCTTGGCCCTCGCCCTCTTTACTATC ATGTCTCGTGTGGTGTTCAGACATGTTTTTGAGACGTTTCGTGGTCGATC CCGTGGCGTTGCTTATCGTATGGGTGTCTTTTACAAACAGTAAATGACAC CTACACGCCGTCCGACTCGCGCGTACCCGATGTGCCTTTGATCCTTCTTT TTGGCGATGGCTACCCTGTAACTTGCATTCGCTCTCTCAAAAGCAGCACA TGAGCACATCCGAACTCCTCTGCAGAGTCATGGTTGAGGTACACCAATCC GCTCAAATGTTACAATGATCTTTGCTCTACGACGCATTGTTTCTGGTTGC ACCAGTATTGTGAAAAGGTTTTTGCGGCCCTACATGTGTCTGCGCGTGTA CTTCATTATCACGCTCGCGGGCAGTTGTTGAGAGTGTTTCTGAACCAAGG AATGTGGCTCAAGTTCCGAATACTTAAACGTATATATCTACGGAGTACAT CAACAAAGATTATGATTTTTACGAGTGAAATAGACATGGGCGGGCGAGGT AGGGACAGCCTCGTGCGCCAAGGCTTCCACGCAGCATCCACGGGTCCCAT TGATTCCCGTAGGTGTCGGAGATCTGTAACTGCCGAGTACACATTTAAAA CACCGCGTGTACTACCGGCGTGCTGCTTGCGTAACTTGCTCGCGCTGCCT TTGTATCTCCTTACGCCAAACATCAACCCATCTCCGCCACCAGGCGCTGA TATACTTCGCGGTGTCGAAAAAAGGAGAGGCCCCCATCGATGGCATCACC GATGCCAACCCGGAAGGGCTGACGTCCACGTGCGGAAAGTGGGCGGGGGA GTTCAAGGAGAGGCTCGCCAAGGGAGGGCTTACGTGCCACGAGCTTGCCG AAGACAGGTAGGGTGAATGAAGTTGGGACCAGCAGGGGCGGAATCGCTTC TTGCCTACCGTCCGCTTTTTTGGATCGCGCAACGAGAGAAGGAAATTGGT TTTGGGAGTTGAGCAAATGTCCGCTTTTGCTGCTGTGCGAACACGTCAGG GTGCGGATACAACGCAGTTAGTTCAGACGAATGGCGTGCGTATCACTTAT GTTGGGGATCGATCAGCGCAACACCGCGGCGAAAGCCAACGAAACACAAT TCGATCAATAAGACGGCGCCGCCACAAAGAACCTTGTATCTATTCTACGT TCAAGAACATGTCGTTCGATGAGGTAAAGTTGTCACCGAGATGGCGTTAT CGTGTATCAAAACTCTTGCCGTGATTCTTGTACGACGCGCACACTCACCC TCTGCCTGCCGCCGCATCCGACAGGTACACCGCCAGGATGTACGAGAAGC ACATCTGGATCTGCGCCTTCATGGTGGCGGGAGCGGCTCACAAGTGCAAC ATGGGCCAAGTGGACGCCGAGCATGCCGACGAGGTATGTCTCTACCGTAA GATTGCGAGCCATCGCACGGTCGAGACCAATAGAGTTAAAAGCGGCCGCC TCGGGGGTGCCATGACTCGCATATGCTTGGAGTTTTCGTTGGCTCATGCC GACGAGACGAGGTGACGGTGTAGGGGCTGTTGCCTATTCGGCAACGGCAT ACAGCTCGCCCCCGCAATACCACCTGTGCTGCACCAAGCACGCCTCTTCA ACTGGAGATGGCGTGAAAAGCTTGGCTCTGGCGCGTCGATTCACTGACGC CTGTAGCTACATCGCCGAATACACGGCCACCAAGGCTGCGTCGGTTTCAC AACACCGCCAGAGATGGCGGGTATGGGTAGGAATGGCACGAGGAAAGCTA CGCCGGCGCCGAACTGGTGGTAGTGCCCGTAGCCAATCTGACAGCATTTG TACACCGCCCGTCCTTCGTTATTCGTTTTGAGAACACAGCGTATGTTAGG AATTGCGTCAATCGCCCCGCCTTTCTTGCCCATCGAGTTTGATTTTTTCT GCAATAATTTCTCAGGATGGTCATTTTGTTCCGTTTTCCGATTCCCGTGC AATGGGGGCGGAACGGAGAGCGCGGCGCAAATGTATGAGCGGTCGAGGTC GTTGGTGTGAACTTCTCTGATCTTCTGCTAACTCCTGACCCCCCCCCCCC CCCTCTGGGGTAGGTACGCACGTTGATCGGAGAGCTACAGAAGGCGATAG AGGTGGAGTATGGAGTTGCGTTCGAGGACGGCGTGAAGGAACGTCTCTGC GCGTACTCTAGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13502:442..4706-

>mRNA_Ecto-sp13_S_contig13502.2789.1 ID=mRNA_Ecto-sp13_S_contig13502.2789.1|Name=mRNA_Ecto-sp13_S_contig13502.2789.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=579bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13502:442..4706- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGGCGGCGGGGACACCCTGGTCGGACGTGGTGACGCCATCCCCGA
TGGTGACGGACCGATTTACGTTTGCACACGGAACGATGATCTAGAGGACG
TAATCTCGCGCACGCCTCCGGCCAGAAGAGAGGACTTGGTTTTCCTGCAG
AACGGCGTTTTGGGGCCTTTGCTAGAAAAGCACGGGCTCGCCAAGAACAC
TCAGGCGCTGATATACTTCGCGGTGTCGAAAAAAGGAGAGGCCCCCATCG
ATGGCATCACCGATGCCAACCCGGAAGGGCTGACGTCCACGTGCGGAAAG
TGGGCGGGGGAGTTCAAGGAGAGGCTCGCCAAGGGAGGGCTTACGTGCCA
CGAGCTTGCCGAAGACAGGTACACCGCCAGGATGTACGAGAAGCACATCT
GGATCTGCGCCTTCATGGTGGCGGGAGCGGCTCACAAGTGCAACATGGGC
CAAGTGGACGCCGAGCATGCCGACGAGGTACGCACGTTGATCGGAGAGCT
ACAGAAGGCGATAGAGGTGGAGTATGGAGTTGCGTTCGAGGACGGCGTGA
AGGAACGTCTCTGCGCGTACTCTAGGTGA
back to top