mRNA_Ecto-sp13_S_contig1350.2788.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1350.2788.1
Unique NamemRNA_Ecto-sp13_S_contig1350.2788.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1350.2788.1 vs. uniprot
Match: D8LHS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS0_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 4.310e-42
Identity = 80/103 (77.67%), Postives = 92/103 (89.32%), Query Frame = 3 
Query:  105 DDDVRPGQEFLSAAPVLITPQGQNRAAMAIVALGGDLGILSSRAGEFGESNLFPDNSVAKTSELAEILKGEHAKFQANVYDFLDYAAAAEKGTNLHRGESQSR 413
            +DDV P +EF+SAAP LITPQGQNRAAMA++AL GDLG   SRAGEFG+SNLFP++S AKT ELA++L GEHAKFQ NVY+FLDYAAAAEKGTNLH+GESQSR
Sbjct:  135 NDDVLPSKEFVSAAPSLITPQGQNRAAMAVIALAGDLGCPLSRAGEFGQSNLFPEDSAAKTLELAKVLTGEHAKFQVNVYNFLDYAAAAEKGTNLHKGESQSR 237
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1350.2788.1 vs. uniprot
Match: D7FRB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRB5_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 1.840e-19
Identity = 52/98 (53.06%), Postives = 64/98 (65.31%), Query Frame = 3 
Query:  120 PGQEFLSAAPVLITPQGQNRAAMAIVALGGDLGILSSRAGEFGESNLFPDNSVAKTSELAEILKGEHAKFQANVYDFLDYAAAAEKGTNLHRGESQSR 413
            P  +F    P LITPQGQNRAAM I+ LG +LG+ S+RAGEFGES LF  +S +KT +L   L    A F  NVY+ L Y+    KG NLH GE++SR
Sbjct:  113 PSGDFTDNMPKLITPQGQNRAAMCIMVLGPELGLSSARAGEFGESALFESDSESKTEQLKTALSCPKALFCVNVYNHLGYSDCMAKGDNLHTGETESR 210
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1350.2788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHS0_ECTSI4.310e-4277.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRB5_ECTSI1.840e-1953.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1350contigEcto-sp13_S_contig1350:1877..3606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size769
Hectar predicted targeting categoryother localisation
Exons3
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462721.3385282-UTR-Ecto-sp13_S_contig1350:1876..19781681462721.3385282-UTR-Ecto-sp13_S_contig1350:1876..1978Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1350 1877..1978 +
1681462721.3500497-UTR-Ecto-sp13_S_contig1350:2368..24511681462721.3500497-UTR-Ecto-sp13_S_contig1350:2368..2451Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1350 2369..2451 +
1681462721.3833063-UTR-Ecto-sp13_S_contig1350:3343..36061681462721.3833063-UTR-Ecto-sp13_S_contig1350:3343..3606Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1350 3344..3606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462721.3607984-CDS-Ecto-sp13_S_contig1350:2451..25391681462721.3607984-CDS-Ecto-sp13_S_contig1350:2451..2539Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1350 2452..2539 +
1681462721.3698018-CDS-Ecto-sp13_S_contig1350:3110..33431681462721.3698018-CDS-Ecto-sp13_S_contig1350:3110..3343Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1350 3111..3343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1350.2788.1prot_Ecto-sp13_S_contig1350.2788.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1350 2452..3343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1350.2788.1

>prot_Ecto-sp13_S_contig1350.2788.1 ID=prot_Ecto-sp13_S_contig1350.2788.1|Name=mRNA_Ecto-sp13_S_contig1350.2788.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
MAIVALGGDLGILSSRAGEFGESNLFPDNSVAKTSELAEILKGEHAKFQA
NVYDFLDYAAAAEKGTNLHRGESQSRARMLIFICIRPTNTYMKGLILFSC
ETLIAC*
back to top

mRNA from alignment at Ecto-sp13_S_contig1350:1877..3606+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1350.2788.1 ID=mRNA_Ecto-sp13_S_contig1350.2788.1|Name=mRNA_Ecto-sp13_S_contig1350.2788.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1730bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1350:1877..3606+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCGAAGGTGAAAGCATACATACCTCGAGACTGCCATCACTGCAGCGTT
GGACCAAGGCGCTGATCTTACTTGGGATACTGCTCTTCACGCTACGAACT
GGGTGAGAGACACTGAATAAGACGTGAAACGTATTCTCAACGTAGACAGA
GAATCATGTTGTGTTCTTGGTCGGTCAGGACCAGCGGACGTGTAAGCTGG
ATAGGTACTGAAGATGTTAATTGCTGTGGGACATTATTCTGCTTCTGGCA
AATGGCACGGCGTGGTCGATTTGCGTGTGTGTATAGTCTTTATTGAAAAC
ATCCCCCTCCTGCTCGGCAATGTAGCCCGGAGACAAAAGCCACTATCACC
AGTTTGGGTTGAGGATCTCGCTCTGAGAGCAGGACATAGTGAGTTATAAC
CCACGTCAAACACCGTCTTTTCCATCAATGGTGCTAGAAGTATCACACAC
ACCTGTTCATGTATCATATATGTCGTTATTCCACTCTTGCAGCCGATGAC
GACGTCCGGCCCGGCCAAGAATTCTTGTCAGCAGCGCCAGTGCTGATCAC
TCCCCAAGGGCAAAACCGTGCGGCGATGGCAATCGTTGCCTTGGGCGGCG
ACCTCGGCATCCTTTCCTCCAGAGCCGGAGAATTTGGAGAGTCGAACCTC
TTCCCAGACAACAGTGAGTAACGGTTGCACATTATATGTGCATAACGTGT
CTCCCTGTGACCATCAACCCGAGGCTATTCCAAGAAGTCGACAAGGTGAC
GATATCCGGAATAAAAAAACTTCAGGATCGGTATACCGCGGAATGCTCAC
ATTTCTGATGAAAGAAACATGTGGTTGGTTTCTTTGGAGTAGGGACACAA
CAAACTGCCGCACAAGGTTTTGGTCGATATGAACGGTTTCTCTGTGCCGG
CGTCGCGCGTCGATCGTCGACCACGAGGCACGGGGGTTGGTCTGAAACGA
CTTTGCGGTAGATGTCGTGACGAAAAGGAGAGAGGAAGGATCCCTTGTTG
CGCGCGGTGAAGGTTAAACGTAAAGATTTCGATCAACATAATATTAAAGA
ACCCCCGAGATACCCCGCTTGCATGTGAGTGAGCGCTTCGTGAGCGCTTT
GTGACATTTACTCCACCCCAATATATAAGGTATATCCTAGTCTATGGTTT
GATCCACTCCCTGAGGAAATGAAATTCGAAACCTTTCCTTTACTCCCAAT
ATCCCATCCTACACGCGCCTTCGAAAATACGCAGGTGTCGCTAAAACCTC
GGAGCTTGCCGAAATCTTGAAAGGAGAACATGCCAAGTTCCAGGCTAACG
TGTACGACTTCTTGGACTACGCTGCGGCTGCGGAGAAGGGGACCAATCTG
CACAGGGGCGAGAGCCAGTCTCGGGCGAGGATGTTGATCTTTATATGCAT
ACGTCCAACCAATACGTACATGAAAGGGTTGATACTTTTTTCCTGTGAGA
CTCTCATTGCCTGTTGACCAGGACTTTGATTAACACCGTTGGTATGGATA
CCAGGATATGGAAGTATCTTCCTAGGGGTACGGACAGGGGCGCACATGCC
ACCATGGATACCAGGATTTCGTACTAACTTCACAGGGGTAGGGGCGCACA
TGCCACCATGGATACCAGGACATGGAGGTATCTTCCTAGGAGTAGGGACG
CACATGCACAATATGTATATCTGGGGACTACGTACGAACAACGTTCTACC
GCTCTGGAGATGTTTGCCACGAAGGATTCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1350:1877..3606+

>mRNA_Ecto-sp13_S_contig1350.2788.1 ID=mRNA_Ecto-sp13_S_contig1350.2788.1|Name=mRNA_Ecto-sp13_S_contig1350.2788.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1350:1877..3606+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAATCGTTGCCTTGGGCGGCGACCTCGGCATCCTTTCCTCCAGAGC
CGGAGAATTTGGAGAGTCGAACCTCTTCCCAGACAACAGTGTCGCTAAAA
CCTCGGAGCTTGCCGAAATCTTGAAAGGAGAACATGCCAAGTTCCAGGCT
AACGTGTACGACTTCTTGGACTACGCTGCGGCTGCGGAGAAGGGGACCAA
TCTGCACAGGGGCGAGAGCCAGTCTCGGGCGAGGATGTTGATCTTTATAT
GCATACGTCCAACCAATACGTACATGAAAGGGTTGATACTTTTTTCCTGT
GAGACTCTCATTGCCTGTTGA
back to top