mRNA_Ecto-sp13_S_contig13499.2782.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig13499.2782.1
Unique Name	mRNA_Ecto-sp13_S_contig13499.2782.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig13499.2782.1 vs. uniprot
Match: A0A6H5KBL4_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL4_9PHAE)

HSP 1 Score: 348 bits (893), Expect = 1.130e-114
Identity = 183/201 (91.04%), Postives = 189/201 (94.03%), Query Frame = 1

Query:    1 MEEGSTGKKALAFLTSALGRVVSSSSPEKLVYDLQTFAVPTGTPCSEYLTTLQGLVHSVRNLGIVTPQDNTIQMPVRESVSD*YSVLTASVFKGKELGVVPFDNIDTLMHELRNFEAVEGGATTPTRRVAQVKSSSGGWQGKRGDGGGRTGSGGTNTFRSASPGRSDGGYGGRVMTVEDMYYEDECAEFKRVYDIHAAPRT 603
            MEEGSTGKKALAFLTSALGRVVSSSSPEKLVYDLQTFA PTGTP SEYLT LQGLV +VRNLG+VTPQDNTIQ+ VRESVSD YSVLTASVFKGKE GVVPFDNIDTLMHELRNFEAV+GGATTPTR +AQVKSSSG  QG+RG GGGRTGSGGTNTFRSASPGRSDGGYGGRVMTVEDM YEDECAEFKRVYDIHAAPRT
Sbjct:  259 MEEGSTGKKALAFLTSALGRVVSSSSPEKLVYDLQTFAAPTGTPYSEYLTILQGLVQNVRNLGVVTPQDNTIQLAVRESVSDQYSVLTASVFKGKEKGVVPFDNIDTLMHELRNFEAVKGGATTPTRMMAQVKSSSGWRQGQRGCGGGRTGSGGTNTFRSASPGRSDGGYGGRVMTVEDMDYEDECAEFKRVYDIHAAPRT 459

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BLAST of mRNA_Ecto-sp13_S_contig13499.2782.1 vs. uniprot
Match: A0A6H5KRF6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF6_9PHAE)

HSP 1 Score: 333 bits (855), Expect = 1.290e-111
Identity = 179/206 (86.89%), Postives = 188/206 (91.26%), Query Frame = 1

Query:    1 MEEGSTGKKALAFLTSALGRVVSSSSPEKLVYDLQTFAVPTGTPCSEYLTTLQGLVHSVRNLGIVTPQDNTIQMPVRESVSD*YSVLTASVFKGKELGVVPFDNIDTLMHELRNFEAVEGGATTPTRRVAQVKSSSGGWQGKRGDGGGRTGSGGTNT-----FRSASPGRSDGGYGGRVMTVEDMYYEDECAEFKRVYDIHAAPRT 603
            M+EGSTGKKAL FLTSAL RVVSSSSPEKLVYDLQT AVPTGTP SEYLTTLQGLVH+VRNLG+VTPQDNTIQ+ VRESVSD YSVLTAS+FKGKEL VV FDNIDTLMHELRNFEAV+GGATTPTRR+AQVKSSSG  QG+RG GGGRTGSGGTNT      RSASPGRSDGGYGGRVMTVEDM YEDECAEF+RVYDIHAAPRT
Sbjct:   55 MDEGSTGKKALTFLTSALWRVVSSSSPEKLVYDLQTCAVPTGTPYSEYLTTLQGLVHNVRNLGVVTPQDNTIQLAVRESVSDQYSVLTASMFKGKELCVVAFDNIDTLMHELRNFEAVKGGATTPTRRMAQVKSSSGWRQGQRGGGGGRTGSGGTNTRVMTGXRSASPGRSDGGYGGRVMTVEDMDYEDECAEFQRVYDIHAAPRT 260

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BLAST of mRNA_Ecto-sp13_S_contig13499.2782.1 vs. uniprot
Match: D7G674_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G674_ECTSI)

HSP 1 Score: 321 bits (822), Expect = 3.980e-108
Identity = 169/202 (83.66%), Postives = 183/202 (90.59%), Query Frame = 1

Query:    1 MEEGSTGKKALAFLTSALGRVVSSSSPEKLVYDLQTFAVPTGTPCSEYLTTLQGLVHSVRNLGIVTPQDNTIQMPVRESVSD*YSVLTASVFKGKELGVVPFDNIDTLMHELRNFEAVEGGATTPTRRVAQVKSSSGGWQGKRGDGGGRTGSGGTNTFRSASPGRSDGGYGGR-VMTVEDMYYEDECAEFKRVYDIHAAPRT 603
            M  GSTG++AL FLTSALGRVVSSSSPEKLVYDLQTF VPTGTP SEYLTTL GLVH+VRNLGIVTPQDNTIQ+ VRESVSD YSVLTASVFKGK+LG+VPFDNIDTLM ELRNFEAV+GGATTPTRR AQVK SSGG QG++ DGGG TGSGGTNTFRSASPGR DGGYGGR VMTV+++  EDECAEF+RVYDIH +PRT
Sbjct:    1 MARGSTGREALTFLTSALGRVVSSSSPEKLVYDLQTFTVPTGTPYSEYLTTLHGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKQLGLVPFDNIDTLMQELRNFEAVKGGATTPTRRSAQVKGSSGGRQGQKRDGGGGTGSGGTNTFRSASPGRLDGGYGGRRVMTVDEVDCEDECAEFQRVYDIHVSPRT 202

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BLAST of mRNA_Ecto-sp13_S_contig13499.2782.1 vs. uniprot
Match: A0A6H5K0Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q4_9PHAE)

HSP 1 Score: 275 bits (702), Expect = 2.240e-89
Identity = 153/202 (75.74%), Postives = 165/202 (81.68%), Query Frame = 1

Query:    1 MEEGSTGKKALAFLTSALGRVVSSSSPEKLVYDLQTFAVPTGTPCSEYLTTLQGLVHSVRNLGIVTPQDNTIQMPVRESVSD*YSVLTASVFKGKELGVVPFDNIDTLMHELRNFEAVEGGATTPTRRVAQVKSSSGGWQGKRGDGGGRTGSGGTNTFRSASPGRSDGGYGGR-VMTVEDMYYEDECAEFKRVYDIHAAPRT 603
            +EEGSTG+KALAFLTSALGRVV+SSSPEK+VYDLQTFAVPTGTP  EYLTTLQGL H+VRNL +VTPQDNTIQ+ VRE VSD YSVLTASV KGKELGVV FDN                    PTRR+AQVK SSGG QG+R DGGGRTGSGG NTFRSASPGRSDGGYGGR VMTVEDM YED+C EFKRVY IH++PRT
Sbjct:   24 IEEGSTGRKALAFLTSALGRVVNSSSPEKVVYDLQTFAVPTGTPYREYLTTLQGLGHNVRNLALVTPQDNTIQLAVREIVSDQYSVLTASVCKGKELGVVQFDNX-------------------PTRRMAQVKGSSGGRQGQRCDGGGRTGSGGGNTFRSASPGRSDGGYGGRRVMTVEDMDYEDKCEEFKRVYGIHSSPRT 206

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BLAST of mRNA_Ecto-sp13_S_contig13499.2782.1 vs. uniprot
Match: A0A6H5K8R6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R6_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 2.620e-75
Identity = 130/152 (85.53%), Postives = 138/152 (90.79%), Query Frame = 1

Query:    1 MEEGSTGKKALAFLTSALGRVVSSSSPEKLVYDLQTFAVPTGTPCSEYLTTLQGLVHSVRNLGIVTPQDNTIQMPVRESVSD*YSVLTASVFKGKELGVVPFDNIDTLMHELRNFEAVEGGATTPTRRVAQVKSSSGGWQGKRGDGGGRTGS 456
            MEE STG+KALAFLTSALGRVVSSS PEKLVYDLQT AVPTGTP  EYLTTLQGLVHSVRNLGIVTPQDNTIQ+ V ESVSD  SVLTA VF+GKELGVV FD+IDTLMHE+R+FEAVEGGATTPTRR+AQVK SSGG QG+R DGGGRTGS
Sbjct:  170 MEERSTGRKALAFLTSALGRVVSSSLPEKLVYDLQTLAVPTGTPYGEYLTTLQGLVHSVRNLGIVTPQDNTIQLAVGESVSDQDSVLTACVFRGKELGVVTFDHIDTLMHEVRSFEAVEGGATTPTRRMAQVKGSSGGRQGQRRDGGGRTGS 321

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BLAST of mRNA_Ecto-sp13_S_contig13499.2782.1 vs. uniprot
Match: A0A6H5K255_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K255_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 5.100e-70
Identity = 137/196 (69.90%), Postives = 141/196 (71.94%), Query Frame = 1

Query:   16 TGKKALAFLTSALGRVVSSSSPEKLVYDLQTFAVPTGTPCSEYLTTLQGLVHSVRNLGIVTPQDNTIQMPVRESVSD*YSVLTASVFKGKELGVVPFDNIDTLMHELRNFEAVEGGATTPTRRVAQVKSSSGGWQGKRGDGGGRTGSGGTNTFRSASPGRSDGGYGGRVMTVEDMYYEDECAEFKRVYDIHAAPRT 603
            TGKKALAFLTSALGRVVSSSSPEKLVYDLQTFAVPTGTP SEYLTTLQGLVH+VRNL IVTPQDNTIQ+ VRESVSD YSVLTASVFKGKELG              RNF+AV+GG                                    FRSASPGRSDGGYGGRVMTVEDM YEDECAEFKRVYDIHAAPRT
Sbjct:  458 TGKKALAFLTSALGRVVSSSSPEKLVYDLQTFAVPTGTPYSEYLTTLQGLVHNVRNLAIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELG--------------RNFKAVKGGGKDSDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRSASPGRSDGGYGGRVMTVEDMDYEDECAEFKRVYDIHAAPRT 639

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BLAST of mRNA_Ecto-sp13_S_contig13499.2782.1 vs. uniprot
Match: A0A6H5JYQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ6_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 5.710e-42
Identity = 78/98 (79.59%), Postives = 85/98 (86.73%), Query Frame = 1

Query:    1 MEEGSTGKKALAFLTSALGRVVSSSSPEKLVYDLQTFAVPTGTPCSEYLTTLQGLVHSVRNLGIVTPQDNTIQMPVRESVSD*YSVLTASVFKGKELG 294
            MEEGSTGKKALAFLTSALG+VVSSSSPEKLVYDLQ FAVPTGTP SEYLTTLQGLVH+VRNLGIVTPQDNTIQ+ VRESVSD +        +G+ +G
Sbjct:    1 MEEGSTGKKALAFLTSALGKVVSSSSPEKLVYDLQRFAVPTGTPNSEYLTTLQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQHKCFDRFRVQGQGVG 98

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BLAST of mRNA_Ecto-sp13_S_contig13499.2782.1 vs. uniprot
Match: A0A6H5K9S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S7_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.100e-17
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1

Query:    1 MEEGSTGKKALAFLTSALGRVVSSSSPEKLVYDLQTFAVPTGTP 132
            MEEGSTG+KAL FLTSALGRVVSSSSPEKLVYDLQTFAVPTGTP
Sbjct:    1 MEEGSTGRKALTFLTSALGRVVSSSSPEKLVYDLQTFAVPTGTP 44

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BLAST of mRNA_Ecto-sp13_S_contig13499.2782.1 vs. uniprot
Match: A0A6H5K1N6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N6_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.960e-5
Identity = 21/41 (51.22%), Postives = 30/41 (73.17%), Query Frame = 2

Query:  623 PFFAWFTSIEEKDRHRRAFGLRCLNCGSEGHFVRDCDKGYI 745
            PF+  F S +E+D  R+A+GL+CLNCG + HFVR+C   +I
Sbjct:  760 PFYTRFDSRKEQDEARQAYGLKCLNCGDQSHFVRECTHPFI 800

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig13499.2782.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig13499.2782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9


Match Name	E-value	Identity	Description
A0A6H5KBL4_9PHAE	1.130e-114	91.04	CCHC-type domain-containing protein n=2 Tax=Ectoca...	[more]
A0A6H5KRF6_9PHAE	1.290e-111	86.89	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
D7G674_ECTSI	3.980e-108	83.66	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5K0Q4_9PHAE	2.240e-89	75.74	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K8R6_9PHAE	2.620e-75	85.53	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K255_9PHAE	5.100e-70	69.90	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JYQ6_9PHAE	5.710e-42	79.59	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K9S7_9PHAE	1.100e-17	95.45	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K1N6_9PHAE	1.960e-5	51.22	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig13499	contig	Ecto-sp13_S_contig13499:722..1466 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	745
Hectar predicted targeting category	other localisation
Exons	1
Ec32 ortholog description	Zinc finger, CCHC-type
Ec32 ortholog	Ec-00_009740.1
Cds size	294

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462720.3559308-UTR-Ecto-sp13_S_contig13499:721..848	1681462720.3559308-UTR-Ecto-sp13_S_contig13499:721..848	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig13499 722..848 -
1681462720.377762-UTR-Ecto-sp13_S_contig13499:1142..1466	1681462720.377762-UTR-Ecto-sp13_S_contig13499:1142..1466	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig13499 1143..1466 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462720.366439-CDS-Ecto-sp13_S_contig13499:848..1142	1681462720.366439-CDS-Ecto-sp13_S_contig13499:848..1142	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig13499 849..1142 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig13499.2782.1	prot_Ecto-sp13_S_contig13499.2782.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig13499 849..1142 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig13499:722..1466-
coding sequence from alignment at Ecto-sp13_S_contig13499:722..1466-

protein sequence of mRNA_Ecto-sp13_S_contig13499.2782.1

>prot_Ecto-sp13_S_contig13499.2782.1 ID=prot_Ecto-sp13_S_contig13499.2782.1|Name=mRNA_Ecto-sp13_S_contig13499.2782.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=98bp
MHELRNFEAVEGGATTPTRRVAQVKSSSGGWQGKRGDGGGRTGSGGTNTF
RSASPGRSDGGYGGRVMTVEDMYYEDECAEFKRVYDIHAAPRTKLSE*

mRNA from alignment at Ecto-sp13_S_contig13499:722..1466-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig13499.2782.1 ID=mRNA_Ecto-sp13_S_contig13499.2782.1|Name=mRNA_Ecto-sp13_S_contig13499.2782.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=745bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13499:722..1466- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGAAGGGTCGACGGGTAAGAAAGCGTTGGCATTCTTGACTTCGGC
GTTGGGGAGGGTGGTGAGTTCATCGTCACCCGAGAAGTTGGTATACGACT
TGCAGACGTTCGCAGTACCTACTGGAACGCCGTGTAGCGAGTACTTGACT
ACCTTGCAGGGGTTGGTGCACAGTGTTCGAAACCTGGGAATTGTGACGCC
GCAGGACAACACAATTCAAATGCCAGTCAGAGAGAGTGTGTCCGATTAAT
ACAGTGTTCTGACTGCTTCCGTGTTCAAGGGCAAGGAGTTGGGCGTTGTG
CCGTTCGATAACATCGACACCTTGATGCATGAATTGCGAAATTTCGAGGC
GGTGGAGGGGGGGGCAACGACTCCGACGCGGAGGGTGGCTCAGGTGAAGA
GTTCCTCGGGGGGGTGGCAGGGAAAGAGAGGGGATGGAGGAGGAAGGACA
GGGTCGGGGGGAACGAATACATTTCGGTCCGCTTCTCCTGGCAGGTCAGA
TGGTGGATATGGGGGGAGGGTGATGACGGTGGAGGACATGTATTACGAGG
ACGAATGTGCAGAGTTTAAGAGAGTCTATGACATTCATGCGGCGCCTCGC
ACAAAGCTAAGCGAATGATTGTCCTTTCTTCGCGTGGTTTACGTCTATCG
AGGAAAAGGACAGGCACAGGCGGGCGTTCGGATTAAGGTGTTTGAACTGT
GGCAGTGAGGGACACTTTGTGCGGGATTGTGACAAGGGGTACATT

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13499:722..1466-

>mRNA_Ecto-sp13_S_contig13499.2782.1 ID=mRNA_Ecto-sp13_S_contig13499.2782.1|Name=mRNA_Ecto-sp13_S_contig13499.2782.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13499:722..1466- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATGAATTGCGAAATTTCGAGGCGGTGGAGGGGGGGGCAACGACTCC
GACGCGGAGGGTGGCTCAGGTGAAGAGTTCCTCGGGGGGGTGGCAGGGAA
AGAGAGGGGATGGAGGAGGAAGGACAGGGTCGGGGGGAACGAATACATTT
CGGTCCGCTTCTCCTGGCAGGTCAGATGGTGGATATGGGGGGAGGGTGAT
GACGGTGGAGGACATGTATTACGAGGACGAATGTGCAGAGTTTAAGAGAG
TCTATGACATTCATGCGGCGCCTCGCACAAAGCTAAGCGAATGA