mRNA_Ecto-sp13_S_contig13498.2781.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13498.2781.1
Unique NamemRNA_Ecto-sp13_S_contig13498.2781.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13498.2781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13498contigEcto-sp13_S_contig13498:580..3927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1681
Hectar predicted targeting categoryother localisation
Exons4
Cds size987
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462720.2780497-UTR-Ecto-sp13_S_contig13498:579..9741681462720.2780497-UTR-Ecto-sp13_S_contig13498:579..974Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13498 580..974 +
1681462720.2861986-UTR-Ecto-sp13_S_contig13498:1743..20421681462720.2861986-UTR-Ecto-sp13_S_contig13498:1743..2042Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13498 1744..2042 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462720.2946215-CDS-Ecto-sp13_S_contig13498:2042..27381681462720.2946215-CDS-Ecto-sp13_S_contig13498:2042..2738Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13498 2043..2738 +
1681462720.3038428-CDS-Ecto-sp13_S_contig13498:2955..31291681462720.3038428-CDS-Ecto-sp13_S_contig13498:2955..3129Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13498 2956..3129 +
1681462720.3137627-CDS-Ecto-sp13_S_contig13498:3810..39271681462720.3137627-CDS-Ecto-sp13_S_contig13498:3810..3927Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13498 3811..3927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13498.2781.1prot_Ecto-sp13_S_contig13498.2781.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13498 2043..3927 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13498.2781.1

>prot_Ecto-sp13_S_contig13498.2781.1 ID=prot_Ecto-sp13_S_contig13498.2781.1|Name=mRNA_Ecto-sp13_S_contig13498.2781.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=329bp
MNISSTLVAQNRGFHLSRLWSVGDAYFGYPSAPGSGWYSRASSLYELVRR
SDLQDLSRLSTALRSPFNRKGLKKRQNWSANRGLGCGHHTTLVLTNVAAA
AKATPPTAQETPLSPQNHRHKTTQPPPTKTMTTIAASHFSGTLRPVLGFC
LGHQVLAHALGGLVQPRTGPDRHYALQESDLLLSFAGRPKAADTTVVWDA
VSMVRRQKESVIGGGSLEGAPPLRLLYHHNDEVVKLPPNATNISTSPRCE
IHGMIMVPKTTTTTTTTTTEGDGSSLGLVEHFTPNLLTFQAHPELSYDYG
REVMNGMLDGDVALGRITHEEASRLKEQV
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mRNA from alignment at Ecto-sp13_S_contig13498:580..3927+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13498.2781.1 ID=mRNA_Ecto-sp13_S_contig13498.2781.1|Name=mRNA_Ecto-sp13_S_contig13498.2781.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13498:580..3927+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGATGTTTCATGATCTCGTTTTGGACATCGCGCAAGCGTTTGCCAAGGC
TGCTCCAGCCACCGCCGCAGCGGCCAGCCACCACACCGACCTCTCGTATC
TCGAACAAGGCGGCGGAGTTTTTGAACCGACCTCAACGCCTCCACCGTCA
GGGAAGCTGGGGGAGAGCAACAAAGAGATTTCCCACGACAACACCCCCAC
GAAATTTCCCGAGAACATTATTGATGACGTGATCGGACCCCCTCTTTCCG
AGCGCGGCGATGGCGGAGGTCCGCGGCACGGCGGCAGAAGTAGCAGCAAA
GGGGTGACTAGGACAACCCCCCCGGTTTTTCACGTGACAGAGTACGACGT
CACCAGGGGACGATACCCGCTCTCGTGGGAGGACCACGCCGGTAGGTGCG
GCTGCAACCACCTGCTTTGACGCCATGGTAAAAAAAGAAAGACAGGAGTG
CGGGCAGTCCCCACCCCCCCCCCCACCCCCTTGCGGCGCCCCCCTCGATT
GTAGCTTCGCCGTACGAGAGTTCCGGCCTGGAGATTTCACGTCAAGTGCG
CACGCTTGGTGCTTCGATACGTAAGGCCAGCGATACGCAAGAACGGGGTT
GGGGTTGAGTGGCAATGCGCCTTTCTCCGTGTGGCCGCCGCGAGGCCCCT
TGTCGTAGACCACCTGGCACGCACACCTGTAGGGTTGTGGAGTAGAGGGT
GCATGAATCGGTCGTCCTTTTTTACTTGGGCGTTAATTGGATAATCGTGG
TCTGCCCAAAGGTTGCGACAAGGTGCTTGACCGCCTCACCGTCGTCAAAG
GTTTTCCTCTCATCTTCTGGCGGATGCCTTGTTTTGTCGGACACGAACAC
TACCGTGTGCATCGCGCGGCACAGCCTTTTCTTATTTGTCCGGCGGCGAG
GTTTTCACGTCTGTATATATGGATGTTTTCACAGAGGGGAGACGTTTCGG
TCTGGTTGATCGTCACGTAAGGTTTGCCGCCTGCTGCAAATGTGAAAATG
GAACGCATGACTTTTAACCGAATCGTACCTTTGTCGCAAACGCAAAATGG
AGCATATAGGAGAAGGGTTCTTATAAGACAGGAAAAGCATCTTGTTCTGC
ACTCTAGATTTCACAATCAACAAAGAACGACGACGATTGTTTTGCCCGCT
TTCTGATTGGCCAGGGTACATCATTCCCGGCGGCACGGCAAGCGCGTGCG
GGGAGGAGCCGTGGATGAAGACATTGCTCGACGAGGTCAAGGGCTTGCGA
GAGACGGACAGGTGTCAACCAATATACCCAACGTTCAGCTCCAAGAGTAG
CTGCGTAGCAGAGTACATTGGGGAAGTTTGGAGACAGGTGATAGTCGCTT
GCTCGAAAGGCCACGGAACGATGACGAAGAAAGAGACGGTTGTTTCGAGC
CTTACCTACGGCGTCAATTAGAAGGAACTAAACCCCCTTCAGAATAGCGT
TTTTTCGTCGAAGATGAACATATCATCAACCTTGGTAGCCCAAAACCGAG
GGTTCCACCTGTCGCGGTTATGGTCGGTTGGTGACGCGTACTTTGGCTAC
CCATCAGCACCAGGGTCTGGCTGGTACAGCCGTGCTTCCTCTCTTTATGA
ATTGGTTCGTCGGTCCGATCTCCAAGATTTATCAAGACTTTCTACTGCCT
TGCGCTCTCCGTTCAACAGGAAGGGCTTGAAGAAGAGACAGAACTGGTCG
GCCAACCGTGGCCTGGGCTGCGGTCATCACACAACGCTCGTGTTGACAAA
CGTTGCTGCAGCAGCGAAAGCAACACCACCAACAGCGCAAGAAACGCCAT
TATCACCACAAAACCACCGCCACAAAACCACACAACCACCACCGACAAAA
ACAATGACAACGATCGCCGCCTCCCATTTCTCTGGCACCCTCAGGCCCGT
TTTAGGCTTTTGCCTGGGTCACCAGGTCCTGGCACACGCGCTGGGGGGGC
TCGTTCAACCCAGGACCGGACCTGACAGGCACTACGCCCTCCAAGAAAGC
GATCTCCTTTTGTCATTCGCCGGCAGGCCTAAGGCCGCGGATACAACTGT
CGTCTGGGATGCCGTTTCGATGGTTCGGCGACAGAAGGAAAGCGTCATCG
GCGGCGGCAGCTTGGAGGGGGCACCGCCGCTGAGGCTTCTTTATCACCAC
AACGACGAGGTGGGGGGAGGTTGGCTGCAAATAATTCGTGAAATATTTTA
TCAAGTACGCGTTGTTCGCGCGTCAACCTGTGTCAATGCGTTCGCGTGCT
TGTCAAGACAACGGTCATGCCCCCTTCCGCCACTCTCAAAGATAGTCGCG
TCCTCAGTCCTAGTTGTTTCGTGTTTGGCCACTATCGATGTTCCTAACCC
CCCCCCCCCCCCTCCCTCCCCCGAAGGTGGTGAAACTCCCTCCCAACGCC
ACGAACATCTCAACCTCGCCGCGCTGCGAGATCCACGGCATGATAATGGT
GCCGAAAACAACAACAACAACAACAACAACAACCACGGAGGGGGACGGAT
CATCTTTGGGGCTGGTAGAACACTTCACGCCGAATCTCTTGACGTTTCAG
GTAAAAAAAAGTCTGAGTCTCGGGGGGTTGGCATCCACCCGCAATCCGGA
CTTTCGGGTCGGCATCCATCGTTTACGACGTGCCAGAACTTTTGGCCCGT
CGGCTCCTTTTTTTTCTCTCCTCCATGGGTTACGCACGCTCCCATCCCTG
AGTTTGTCTCCTTTCTCGGTATAGCCCTTCGGGACGTAGCGCCGAAGGCA
AGCAGAAGGGCGTTTCCCCAAACCCCACCTTCATTTGAATGTTTTTTACC
GTGTACACGAAGCACATTTTATCCGTACCTACCAACTATCGCGAACGTCG
TGCTACGGTGTATGAGATTTTCCGATCCCGAAAAGACACCGCCTAGGGAA
GTGGGCAACATTTCAGATCCAGACCCTTGAAAATTCAACGTTGAAATCAG
ACGTGTGTTTATCTATTGACGATTACGCCGTCGAAAACTAGATAATCTAC
TGTACCGTTGAACTCCCCCATAGGAACTCCCCTCGTTGCTTGCTGTCGCC
CCTCCCCTAGCACGGTAGGGGCGTTCTGCGTAAGAGCCTGTAAGGGGAGG
AAGAGACAAACCGCTCTGGACCAGCCCGTCGTTTCTTGACAAGTTCCCGA
CAACGGCCACGACACATTCGTCTCAATCAGCGCTTCCTCCCTCTCCGGGC
GCCACCGCTACTGCTGTCGTTGCTGCCGCAGGCCCACCCCGAGCTGAGCT
ACGACTACGGCAGGGAGGTGATGAACGGCATGCTGGATGGGGACGTTGCG
CTCGGCCGAATCACGCACGAGGAGGCCAGCAGGCTCAAGGAACAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13498:580..3927+

>mRNA_Ecto-sp13_S_contig13498.2781.1 ID=mRNA_Ecto-sp13_S_contig13498.2781.1|Name=mRNA_Ecto-sp13_S_contig13498.2781.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=987bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13498:580..3927+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACATATCATCAACCTTGGTAGCCCAAAACCGAGGGTTCCACCTGTC
GCGGTTATGGTCGGTTGGTGACGCGTACTTTGGCTACCCATCAGCACCAG
GGTCTGGCTGGTACAGCCGTGCTTCCTCTCTTTATGAATTGGTTCGTCGG
TCCGATCTCCAAGATTTATCAAGACTTTCTACTGCCTTGCGCTCTCCGTT
CAACAGGAAGGGCTTGAAGAAGAGACAGAACTGGTCGGCCAACCGTGGCC
TGGGCTGCGGTCATCACACAACGCTCGTGTTGACAAACGTTGCTGCAGCA
GCGAAAGCAACACCACCAACAGCGCAAGAAACGCCATTATCACCACAAAA
CCACCGCCACAAAACCACACAACCACCACCGACAAAAACAATGACAACGA
TCGCCGCCTCCCATTTCTCTGGCACCCTCAGGCCCGTTTTAGGCTTTTGC
CTGGGTCACCAGGTCCTGGCACACGCGCTGGGGGGGCTCGTTCAACCCAG
GACCGGACCTGACAGGCACTACGCCCTCCAAGAAAGCGATCTCCTTTTGT
CATTCGCCGGCAGGCCTAAGGCCGCGGATACAACTGTCGTCTGGGATGCC
GTTTCGATGGTTCGGCGACAGAAGGAAAGCGTCATCGGCGGCGGCAGCTT
GGAGGGGGCACCGCCGCTGAGGCTTCTTTATCACCACAACGACGAGGTGG
TGAAACTCCCTCCCAACGCCACGAACATCTCAACCTCGCCGCGCTGCGAG
ATCCACGGCATGATAATGGTGCCGAAAACAACAACAACAACAACAACAAC
AACCACGGAGGGGGACGGATCATCTTTGGGGCTGGTAGAACACTTCACGC
CGAATCTCTTGACGTTTCAGGCCCACCCCGAGCTGAGCTACGACTACGGC
AGGGAGGTGATGAACGGCATGCTGGATGGGGACGTTGCGCTCGGCCGAAT
CACGCACGAGGAGGCCAGCAGGCTCAAGGAACAGGTG
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