mRNA_Ecto-sp13_S_contig13495.2780.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13495.2780.1 vs. uniprot
Match: D8LH10_ECTSI (Similar to neutral Sphingomyelinase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH10_ECTSI) HSP 1 Score: 420 bits (1080), Expect = 6.900e-144 Identity = 207/225 (92.00%), Postives = 213/225 (94.67%), Query Frame = 1
Query: 1 MHDSNNAVFETTDTGCHVAGTGLPRLEAAARSGARARSRGGSLLDGWGW-GMITQRPRQRPRVGDSRGPRRTDPYAGEVGPGGVSRLTRLRMDLWGHGAGNTKDAYGTEADVRAISESNQHWAGFKLRVLTQNLWGIPVISRCLEARVHAFAKTLGGGWDVIALQEVWHARERDALRRAALAAGLRYSRHFEHGCGAPLLGPGMGGTGLLILSRYPITESFFRVR 672
MHD NN VFETTDTGCHVAGTGLPRLEAA+RSGARARSRGGSLL+GWGW MI +RPR+RPR GDSRGPR DPYAGE GPG VSRL RLRMDLWG+GAGNTKDAYGTEADVRAISESNQHWAGFKLRVLTQNLWGIPVISRCLEARVHAFAKTLGGGWDVIALQEVWHARERDALRRAALAAGLRYSRHFEHGCGAPLLGPGMGGTGLLILSR+PITESFFR R
Sbjct: 1 MHDPNNPVFETTDTGCHVAGTGLPRLEAASRSGARARSRGGSLLNGWGWWDMIGRRPRRRPRAGDSRGPR-ADPYAGEEGPGRVSRLARLRMDLWGYGAGNTKDAYGTEADVRAISESNQHWAGFKLRVLTQNLWGIPVISRCLEARVHAFAKTLGGGWDVIALQEVWHARERDALRRAALAAGLRYSRHFEHGCGAPLLGPGMGGTGLLILSRFPITESFFRGR 224
BLAST of mRNA_Ecto-sp13_S_contig13495.2780.1 vs. uniprot
Match: A0A6H5L123_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L123_9PHAE) HSP 1 Score: 274 bits (700), Expect = 2.530e-85 Identity = 129/132 (97.73%), Postives = 130/132 (98.48%), Query Frame = 1
Query: 271 MDLWGHGAGNTKDAYGTEADVRAISESNQHWAGFKLRVLTQNLWGIPVISRCLEARVHAFAKTLGGGWDVIALQEVWHARERDALRRAALAAGLRYSRHFEHGCGAPLLGPGMGGTGLLILSRYPITESFFR 666
MDLWGHGAGNTKDAYGTE DVRAISESNQHWAGFKLRVLTQNLWGIPVISRCLEARVHAFAKTLGGGWDVIALQEVWHARERDALRRAAL AGLRYSRHFEHGCGAPLLGPGMGGTGLLILSR+PITESFFR
Sbjct: 1 MDLWGHGAGNTKDAYGTETDVRAISESNQHWAGFKLRVLTQNLWGIPVISRCLEARVHAFAKTLGGGWDVIALQEVWHARERDALRRAALVAGLRYSRHFEHGCGAPLLGPGMGGTGLLILSRFPITESFFR 132
BLAST of mRNA_Ecto-sp13_S_contig13495.2780.1 vs. uniprot
Match: A0A6H5L8K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8K8_9PHAE) HSP 1 Score: 120 bits (302), Expect = 3.450e-32 Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = 1
Query: 1 MHDSNNAVFETTDTGCHVAGTGLPRLEAAARSGARARSRGGSLLDGWGWGMITQRPRQRPRVGDSRGPR 207
MHD +N +FETTDTGCHVAGTGLPRLEAAARSGAR+R GSLLDGWGW MI QRPRQRPRVGDSRGPR
Sbjct: 1 MHDRSNPLFETTDTGCHVAGTGLPRLEAAARSGARSRR--GSLLDGWGWDMIRQRPRQRPRVGDSRGPR 67
BLAST of mRNA_Ecto-sp13_S_contig13495.2780.1 vs. uniprot
Match: A0A0G4IKQ8_PLABS (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IKQ8_PLABS) HSP 1 Score: 100 bits (248), Expect = 8.120e-21 Identity = 65/136 (47.79%), Postives = 80/136 (58.82%), Query Frame = 1
Query: 262 RLRMDLW---GHGAGNTKDAYGT--EADVRAISESNQHWAGFKLRVLTQNLWGIPVISRCLEARVHAFAKTLGGGWDVIALQEVWHARERDALRRAALAAGLRYSRHFEHGCGAPLLGPGMGGTGLLILSRYPITE 654
RLR D+ HG + GT +AD S F+LRVLT N+WG+ + +EARV A + L G +DVIALQEVWHARERDALR A AGL Y+ +F G G P PG GTG+L+LSR PI +
Sbjct: 10 RLRRDITYVNSHGMLRRETGTGTPRDADSGRGSVVGDEADPFELRVLTMNVWGLYFLPH-VEARVEALGERLHG-YDVIALQEVWHARERDALRTAGRQAGLIYAHYFAGGIGFPFW-PGSHGTGVLVLSRLPIVD 142
BLAST of mRNA_Ecto-sp13_S_contig13495.2780.1 vs. uniprot
Match: A0A0H5R271_9EUKA (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R271_9EUKA) HSP 1 Score: 94.0 bits (232), Expect = 1.130e-18 Identity = 58/141 (41.13%), Postives = 85/141 (60.28%), Query Frame = 1
Query: 247 VSRLTRLRMDLWGHGAGNTKDAYGTEADVRAISESNQHWAG-FKLRVLTQNLWGIPVISRCLEARVHAFAKTLGGGWDVIALQEVWHARERDALRRAALAAGLRYSRHFEHGCGAPLLGPGMGGTGLLILSRYPITESFFR 666
++RL R + GA + + GT R +E + G + +R+LT N+WG+ +S +E R+ A + L G +DV+ALQEVWH+RERD LR AA + G+ Y+ +F G GAP PG GTGLLILS+ PI + ++
Sbjct: 5 LNRLYRDIAFVKNRGAFRHETSTGTR---RVSTEDDDGLTGDYSIRILTLNVWGLYFLSH-VEKRIDAICRKLDG-YDVVALQEVWHSRERDVLRDAARSYGMIYAHYFACGVGAPFW-PGSHGTGLLILSKLPIDDVIWK 139
BLAST of mRNA_Ecto-sp13_S_contig13495.2780.1 vs. uniprot
Match: A0A1W0A6Q7_9STRA (Transmembrane protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6Q7_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 3.300e-16 Identity = 45/100 (45.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query: 373 KLRVLTQNLWGIPVISRCLE--ARVHAFAKTLGGGWDVIALQEVWHARERDALRRAALAAGLRYSRHFEHGCGAPL-LGPGMGGTGLLILSRYPITESFF 663
K+RVL+ N+WGIPV C E + A K WD+IALQEVWH RE+ + AAL AG YS +F G PL +G GTGLL+LS++ ++ + +
Sbjct: 47 KIRVLSMNVWGIPVTPYCTERATAMGAILKEKAEDWDIIALQEVWHRREKRIIVNAALRAGFAYSHYFHPAVGFPLPIGHDSFGTGLLVLSKFRLSAAMY 146
BLAST of mRNA_Ecto-sp13_S_contig13495.2780.1 vs. uniprot
Match: A0A0P1B1B6_PLAHL (Sphingomyelin phosphodiesterase 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B1B6_PLAHL) HSP 1 Score: 86.3 bits (212), Expect = 6.180e-16 Identity = 40/98 (40.82%), Postives = 60/98 (61.22%), Query Frame = 1
Query: 373 KLRVLTQNLWGIPVISRCLEARVHAFAKTLGGGWDVIALQEVWHARERDALRRAALAAGLRYSRHFEHGCGAPL-LGPGMGGTGLLILSRYPITESFF 663
K+RVL+ N WG+PV +C E R A + ++++ LQE+WH RER+ + +G Y +F G P+ +GP GTGLL+LS+YPI+ +FF
Sbjct: 45 KIRVLSLNAWGLPVAPQCTE-RAAEIASAISSDFELVVLQEIWHIRERNLIISKVQQSGFHYYHYFNSAVGFPIPMGPDSFGTGLLVLSKYPISSAFF 141
BLAST of mRNA_Ecto-sp13_S_contig13495.2780.1 vs. uniprot
Match: A0A2D4BY22_PYTIN (Sphingomyelin phosphodiesterase-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BY22_PYTIN) HSP 1 Score: 85.5 bits (210), Expect = 1.130e-15 Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = 1
Query: 334 RAISESNQHWAGFKLRVLTQNLWGIPVISRCLEARVHAFAKTLGGGWDVIALQEVWHARERDALRRAALAAGLRYSRHFEHGCGAPL-LGPGMGGTGLLILSRYPITESFF 663
RA S ++ G +LRVL+ N WG+PV C E V A + +D++ LQE+WH RER+ + A AG Y +F+ G P+ G GTGLL+LS+YPI S +
Sbjct: 28 RADWPSWENPTGCQLRVLSLNAWGLPVAPHCTERAVE-IANAIDDSFDIVVLQEIWHRRERNIIIWGAQKAGFEYYHYFQAATGFPIPFGADSFGTGLLVLSKYPIVSSMY 137
BLAST of mRNA_Ecto-sp13_S_contig13495.2780.1 vs. uniprot
Match: T0S358_SAPDV (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0S358_SAPDV) HSP 1 Score: 84.7 bits (208), Expect = 2.090e-15 Identity = 43/100 (43.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query: 373 KLRVLTQNLWGIPVISRCLEAR--VHAFAKTLGGGWDVIALQEVWHARERDALRRAALAAGLRYSRHFEHGCGAPL-LGPGMGGTGLLILSRYPITESFF 663
K+RVL+ N+WGIPV C E + A + WD+I LQEVWH RE+ + AAL AG YS +F G PL +G GTGLL+LS++ ++ + +
Sbjct: 47 KIRVLSMNVWGIPVTPYCTERAQAIGAILEEKAKDWDIITLQEVWHRREKRIIVHAALRAGFAYSHYFHPAVGFPLPIGHDSFGTGLLVLSKFRLSSAMY 146
BLAST of mRNA_Ecto-sp13_S_contig13495.2780.1 vs. uniprot
Match: A0A1V9Z5F5_9STRA (Transmembrane protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z5F5_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 2.750e-15 Identity = 43/100 (43.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query: 373 KLRVLTQNLWGIPVISRCLE--ARVHAFAKTLGGGWDVIALQEVWHARERDALRRAALAAGLRYSRHFEHGCGAPL-LGPGMGGTGLLILSRYPITESFF 663
K+RVL+ N+WGIPV C E + A WD+I LQEVWH RE+ + AAL AG YS +F G PL +G GTGLL+LS++ ++ + +
Sbjct: 39 KIRVLSMNVWGIPVTPYCTERATAIGAILNEKAESWDIITLQEVWHRREKRIIVNAALRAGFAYSHYFHPAVGFPLPIGHDSFGTGLLVLSKFRLSGAIY 138 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13495.2780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13495.2780.1 >prot_Ecto-sp13_S_contig13495.2780.1 ID=prot_Ecto-sp13_S_contig13495.2780.1|Name=mRNA_Ecto-sp13_S_contig13495.2780.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=224bp MHDSNNAVFETTDTGCHVAGTGLPRLEAAARSGARARSRGGSLLDGWGWGback to top mRNA from alignment at Ecto-sp13_S_contig13495:498..2690- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13495.2780.1 ID=mRNA_Ecto-sp13_S_contig13495.2780.1|Name=mRNA_Ecto-sp13_S_contig13495.2780.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2193bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13495:498..2690- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13495:498..2690- >mRNA_Ecto-sp13_S_contig13495.2780.1 ID=mRNA_Ecto-sp13_S_contig13495.2780.1|Name=mRNA_Ecto-sp13_S_contig13495.2780.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=672bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13495:498..2690- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |