mRNA_Ecto-sp13_S_contig13492.2779.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13492.2779.1
Unique NamemRNA_Ecto-sp13_S_contig13492.2779.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13492.2779.1 vs. uniprot
Match: D8LTY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTY9_ECTSI)

HSP 1 Score: 456 bits (1173), Expect = 6.850e-161
Identity = 247/269 (91.82%), Postives = 252/269 (93.68%), Query Frame = 1 
Query:    1 MTSGPRRHAPSLDSDRLWPVDKRPNAASGGGDDSSPRDVASMKAEIAELQAGTTASLDRAIAAAQATASVGARTQVTLKEQREQMGEIDAEARAIDGTLKRTGHNLKYGLTWRGALTAPFRRKKPPAPQAGGGGITGGDISPVFKDDFRQSTPPGGAPAHDGSTTSTPSPKKGGRLKFGSPRKKAGAARAEEIGTKAASKLPENVPEGFETQLDTLDSLLNGLTVQAKEIGAELRQQNEGIEVLGERVEPLRQETASQAKQIKRRFGVK 807
            M SGPRRH PS DSDRLWPVDK+PNAAS GGDDSSPRDVASMKAEIAELQAGTTASLDRAIAAA+ATASVGARTQVTLKEQREQMGEIDAEARAIDGTLKRTGHNLKYGLTWRGALTAPFRRK           ITGGDISPVFKDDFRQSTPPGGAPAH GST+STPSPKKGGRLKFGSPRKKAGAARAEEIGTKAASKLPENVPEGFETQLDTLDSLL+GLTVQAKEIGAEL+QQNEGIEVLGERVEPLRQETA QAKQIKRRFGVK
Sbjct:    1 MASGPRRHTPSSDSDRLWPVDKQPNAASRGGDDSSPRDVASMKAEIAELQAGTTASLDRAIAAAEATASVGARTQVTLKEQREQMGEIDAEARAIDGTLKRTGHNLKYGLTWRGALTAPFRRKXXXXXXXXXXXITGGDISPVFKDDFRQSTPPGGAPAHGGSTSSTPSPKKGGRLKFGSPRKKAGAARAEEIGTKAASKLPENVPEGFETQLDTLDSLLDGLTVQAKEIGAELKQQNEGIEVLGERVEPLRQETAFQAKQIKRRFGVK 269
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13492.2779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTY9_ECTSI6.850e-16191.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13492contigEcto-sp13_S_contig13492:751..1560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size810
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_003830.1
Cds size810
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462720.1749086-CDS-Ecto-sp13_S_contig13492:750..15601681462720.1749086-CDS-Ecto-sp13_S_contig13492:750..1560Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13492 751..1560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13492.2779.1prot_Ecto-sp13_S_contig13492.2779.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13492 751..1560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13492.2779.1

>prot_Ecto-sp13_S_contig13492.2779.1 ID=prot_Ecto-sp13_S_contig13492.2779.1|Name=mRNA_Ecto-sp13_S_contig13492.2779.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=270bp
MTSGPRRHAPSLDSDRLWPVDKRPNAASGGGDDSSPRDVASMKAEIAELQ
AGTTASLDRAIAAAQATASVGARTQVTLKEQREQMGEIDAEARAIDGTLK
RTGHNLKYGLTWRGALTAPFRRKKPPAPQAGGGGITGGDISPVFKDDFRQ
STPPGGAPAHDGSTTSTPSPKKGGRLKFGSPRKKAGAARAEEIGTKAASK
LPENVPEGFETQLDTLDSLLNGLTVQAKEIGAELRQQNEGIEVLGERVEP
LRQETASQAKQIKRRFGVK*
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mRNA from alignment at Ecto-sp13_S_contig13492:751..1560+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13492.2779.1 ID=mRNA_Ecto-sp13_S_contig13492.2779.1|Name=mRNA_Ecto-sp13_S_contig13492.2779.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=810bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13492:751..1560+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACATCGGGCCCTCGGCGGCACGCCCCATCTTTGGACTCGGACAGGCT
CTGGCCGGTGGACAAACGGCCCAATGCCGCTTCCGGAGGCGGTGATGATT
CATCACCTCGCGATGTTGCCTCGATGAAGGCGGAGATCGCCGAGCTGCAG
GCGGGGACCACGGCTTCGTTGGACCGAGCAATAGCGGCGGCTCAGGCAAC
CGCGAGCGTAGGAGCACGGACGCAAGTAACCCTCAAGGAACAGCGGGAGC
AGATGGGTGAAATTGACGCCGAAGCGAGAGCCATAGATGGCACCTTAAAG
CGAACAGGCCACAACCTCAAGTACGGCCTCACGTGGCGTGGGGCCCTTAC
AGCGCCGTTTCGCCGAAAGAAGCCCCCGGCACCGCAGGCAGGCGGCGGCG
GAATCACCGGCGGGGACATTTCCCCGGTGTTCAAGGACGACTTCAGACAA
TCGACACCACCAGGAGGAGCTCCTGCCCACGATGGCAGCACTACTTCCAC
CCCTAGCCCTAAGAAAGGAGGACGCTTGAAATTCGGCTCCCCGCGAAAAA
AGGCAGGCGCGGCACGCGCGGAAGAAATAGGAACCAAGGCGGCGTCGAAG
CTTCCCGAGAACGTTCCCGAAGGATTCGAGACCCAGCTGGACACGCTCGA
TAGCTTGTTGAACGGCCTGACTGTACAGGCCAAGGAAATCGGTGCGGAGC
TGAGGCAACAGAACGAGGGGATTGAGGTGCTGGGGGAGCGTGTGGAGCCG
CTTCGGCAGGAAACGGCGTCCCAGGCGAAACAGATCAAGCGACGGTTTGG
GGTGAAATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13492:751..1560+

>mRNA_Ecto-sp13_S_contig13492.2779.1 ID=mRNA_Ecto-sp13_S_contig13492.2779.1|Name=mRNA_Ecto-sp13_S_contig13492.2779.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=810bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13492:751..1560+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACATCGGGCCCTCGGCGGCACGCCCCATCTTTGGACTCGGACAGGCT
CTGGCCGGTGGACAAACGGCCCAATGCCGCTTCCGGAGGCGGTGATGATT
CATCACCTCGCGATGTTGCCTCGATGAAGGCGGAGATCGCCGAGCTGCAG
GCGGGGACCACGGCTTCGTTGGACCGAGCAATAGCGGCGGCTCAGGCAAC
CGCGAGCGTAGGAGCACGGACGCAAGTAACCCTCAAGGAACAGCGGGAGC
AGATGGGTGAAATTGACGCCGAAGCGAGAGCCATAGATGGCACCTTAAAG
CGAACAGGCCACAACCTCAAGTACGGCCTCACGTGGCGTGGGGCCCTTAC
AGCGCCGTTTCGCCGAAAGAAGCCCCCGGCACCGCAGGCAGGCGGCGGCG
GAATCACCGGCGGGGACATTTCCCCGGTGTTCAAGGACGACTTCAGACAA
TCGACACCACCAGGAGGAGCTCCTGCCCACGATGGCAGCACTACTTCCAC
CCCTAGCCCTAAGAAAGGAGGACGCTTGAAATTCGGCTCCCCGCGAAAAA
AGGCAGGCGCGGCACGCGCGGAAGAAATAGGAACCAAGGCGGCGTCGAAG
CTTCCCGAGAACGTTCCCGAAGGATTCGAGACCCAGCTGGACACGCTCGA
TAGCTTGTTGAACGGCCTGACTGTACAGGCCAAGGAAATCGGTGCGGAGC
TGAGGCAACAGAACGAGGGGATTGAGGTGCTGGGGGAGCGTGTGGAGCCG
CTTCGGCAGGAAACGGCGTCCCAGGCGAAACAGATCAAGCGACGGTTTGG
GGTGAAATGA
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