mRNA_Ecto-sp13_S_contig13481.2773.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13481.2773.1
Unique NamemRNA_Ecto-sp13_S_contig13481.2773.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13481.2773.1 vs. uniprot
Match: D7FYC2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYC2_ECTSI)

HSP 1 Score: 499 bits (1284), Expect = 6.910e-169
Identity = 289/330 (87.58%), Postives = 293/330 (88.79%), Query Frame = 1 
Query:    4 EKLKEAENAAQELREGFGAEESKSVEMAAELLTLVNQKTHLETVKEDLERQVDDFSSRVRMLELDLRTARDDMRGLREDTEVAQKKAGVLEIAKAKAELDLQRAQVEWESQALDNHRSTVARDNTRQAELLDNHMQDLAQLAKLKEDNEVLKKGQDQLRVEVKKCERRCEQAQEETARKEEDLAASRDELVEASEELDRLRRKFRDQLENLVSGKAGTKASRRKXXXXXXDGGSGDANKRAALEEMVGSYKEREERSTADARRLREEARDAKLKNRALFDRYKQLRGIFEDSLGEGELPPDLPSDDKLIAAGAVAAGGRESDTEAQSALK 993
            EKLKEAE AAQELREGFGAEESKSVEMAAELLTLVNQKTHLE VKEDLERQV                         EDTEVAQKKAGVLEIAKAKAELDLQRAQVEWESQALDNHRSTVARDNTRQAELLDNHMQDLAQLAKLKEDNE LKKGQDQLRVEVKKCERRCEQAQEETARKEEDLA SRDELVEA+EELDRLRRKFRDQLENLVSGKAGTKASRRK      DGGSGDANKRAALEEMVGSYKEREER+TADA+RLREEA+DAKLKNRALFDRYKQLRGIFEDSLGEGELPPDLPSDDKLIAAGAVA GGRESD EAQSALK
Sbjct:  291 EKLKEAEKAAQELREGFGAEESKSVEMAAELLTLVNQKTHLEMVKEDLERQVXXXXXXXXXXXXXXXXXXXXXXXXXEDTEVAQKKAGVLEIAKAKAELDLQRAQVEWESQALDNHRSTVARDNTRQAELLDNHMQDLAQLAKLKEDNEALKKGQDQLRVEVKKCERRCEQAQEETARKEEDLATSRDELVEANEELDRLRRKFRDQLENLVSGKAGTKASRRKKDDQNSDGGSGDANKRAALEEMVGSYKEREERATADAKRLREEAKDAKLKNRALFDRYKQLRGIFEDSLGEGELPPDLPSDDKLIAAGAVAVGGRESDAEAQSALK 620
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13481.2773.1 vs. uniprot
Match: A0A836CQN3_9STRA (Kinesin motor domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQN3_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.060e-6
Identity = 85/304 (27.96%), Postives = 142/304 (46.71%), Query Frame = 1 
Query:   61 EESKSVEMAAELLTLVNQKTHLETVKEDLERQVDDFSSRVRMLELDLRTARDDMRGLREDTEVAQKKAGVLEIAKAKAELDLQRAQVEWESQALDNHRSTVARDNTRQAELLDNHMQDLAQLAKLKEDNEVLKKGQDQLRVEVKKCERRCEQAQEETARKEEDLAASRDELVEASEELDRLRRKFRDQLENLVSGKAGTKASRRKXXXXXXDGGSGDANKRAA--------LEEMVGSYKEREERSTADARRLREEARDAKLKNRALFDRYKQLRGIFEDSLGEGELP-PDLPSDDKLIAAGAV 945
            E +K ++MAAEL+TL NQK+ L+ ++  LE+Q  + S ++   E D++ A+ D+ G RE        A + E    KA+L  +R  +E +S+A     +  A    +QA L D    +             L++ + + R  +   + +   AQ + A  +++L     +L+EA    ++ + + R+QL +L        A  RK         SG ANK AA        L E+V +++ERE    ++  +LR++   A    R   D    +R   ED   EG  P P LPS+ +L+A   V
Sbjct:  566 ERAKGLDMAAELVTLANQKSVLQEMRAGLEKQARELSDKLVAAERDMKAAQADLLGARE--------AALQE----KAQLAGERDALEEDSRAFTGVNAREAAMLQQQARLAD----EXXXXXXXXXXXXXLREAESRSRTALAAAKTQSRNAQRQAAALDQELQRRNADLMEA----EKGQSEAREQLASLT-------ARFRKHLADIAGPDSGAANKGAAPPPPPARALSELVRTWREREAHLESETTQLRQQKAAAVRACRGALDALAAMRDAAEDRSPEGAAPLPPLPSEAELLAQAGV 842
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13481.2773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYC2_ECTSI6.910e-16987.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CQN3_9STRA3.060e-627.96Kinesin motor domain-containing protein n=1 Tax=Tr... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13481contigEcto-sp13_S_contig13481:7..3854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score508.8
Seed ortholog evalue1.9e-141
Seed eggNOG ortholog2880.D7FYC2
Model size993
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0244@2759
Cds size993
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13481.2773.1prot_Ecto-sp13_S_contig13481.2773.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13481 7..3854 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462719.7163374-CDS-Ecto-sp13_S_contig13481:6..1541681462719.7163374-CDS-Ecto-sp13_S_contig13481:6..154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13481 7..154 -
1681462719.7253804-CDS-Ecto-sp13_S_contig13481:638..8351681462719.7253804-CDS-Ecto-sp13_S_contig13481:638..835Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13481 639..835 -
1681462719.7336664-CDS-Ecto-sp13_S_contig13481:1141..13101681462719.7336664-CDS-Ecto-sp13_S_contig13481:1141..1310Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13481 1142..1310 -
1681462719.7424479-CDS-Ecto-sp13_S_contig13481:1882..20081681462719.7424479-CDS-Ecto-sp13_S_contig13481:1882..2008Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13481 1883..2008 -
1681462719.7519045-CDS-Ecto-sp13_S_contig13481:2546..26141681462719.7519045-CDS-Ecto-sp13_S_contig13481:2546..2614Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13481 2547..2614 -
1681462719.7648427-CDS-Ecto-sp13_S_contig13481:3067..32201681462719.7648427-CDS-Ecto-sp13_S_contig13481:3067..3220Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13481 3068..3220 -
1681462719.7862642-CDS-Ecto-sp13_S_contig13481:3722..38541681462719.7862642-CDS-Ecto-sp13_S_contig13481:3722..3854Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13481 3723..3854 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13481.2773.1

>prot_Ecto-sp13_S_contig13481.2773.1 ID=prot_Ecto-sp13_S_contig13481.2773.1|Name=mRNA_Ecto-sp13_S_contig13481.2773.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=331bp
KEKLKEAENAAQELREGFGAEESKSVEMAAELLTLVNQKTHLETVKEDLE
RQVDDFSSRVRMLELDLRTARDDMRGLREDTEVAQKKAGVLEIAKAKAEL
DLQRAQVEWESQALDNHRSTVARDNTRQAELLDNHMQDLAQLAKLKEDNE
VLKKGQDQLRVEVKKCERRCEQAQEETARKEEDLAASRDELVEASEELDR
LRRKFRDQLENLVSGKAGTKASRRKKDDQNNDGGSGDANKRAALEEMVGS
YKEREERSTADARRLREEARDAKLKNRALFDRYKQLRGIFEDSLGEGELP
PDLPSDDKLIAAGAVAAGGRESDTEAQSALK
back to top

mRNA from alignment at Ecto-sp13_S_contig13481:7..3854-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13481.2773.1 ID=mRNA_Ecto-sp13_S_contig13481.2773.1|Name=mRNA_Ecto-sp13_S_contig13481.2773.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3848bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13481:7..3854- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGAAAAACTGAAGGAAGCAGAAAACGCGGCACAGGAGTTGCGCGAGGG
CTTCGGGGCGGAGGAGTCAAAGAGTGTCGAGATGGCCGCGGAGCTTCTTA
CTCTCGTGAACCAGAAAACTCATCTTGAAACGGTACGGTAGAATAGTTTC
AGCGATAAATATATGACGGTCTCGAAGCAGGTCTCCTCCGTTTCAAGCAC
CTTAGACACCTGAAACGTGGCTGGGGATGAGACAAAATAAATTATGCACA
ACGCCGCAATCGTTAAATTTCTCGGTCTACAGTAGTATCTCTGTACTTGT
TAGATGGATCCATGTGTCGATTCTGGTTTTCGACAAATTCCAAGTCGGAC
AAAGCAGAGTACTCAAAAGGTATTGCTTGCTGCCGGCAACATATCACGTG
ATGAGGAAGCGCATTAGAAACTCTCAAGGCTGGTGTCCAAACTCGCGTTA
CGTCCACACCTTGCAGGGAAGCATGGGTTACGTGTAGTACCAGTATGAAC
CTTGGCACATTCCAGCGCTTGGTTGCCCGCGAAGACGTAGGATACGCTGC
AGTCTATGTAGACATCCCATACTTCGCTACATCAACATCACCAACATCCA
CACGGTTGTACGCCCAAAAAAAAAAACGGTAAAGGTGAAAGAAGATCTCG
AACGGCAAGTGGATGACTTCTCCTCGAGGGTTCGTATGCTGGAGCTTGAC
CTGAGAACCGCAAGGGACGACATGCGCGGTCTGAGAGAGGATACAGAGGT
GGCTCAGAAGAAGGCTGGCGTCTTGGAAATCGCAAAGGTACCAGCATGCA
GGAGTCTCGACGATGTGAATGCTGACGATGACGTACGTTGGCAAGGGTTG
TCAATGACTTTGCGCTTTCGAAGGTAGACATCGGACAGATGTGCTTACCC
TCAGTCTAGCCAGCGTGAGATGGGAGGGAAAAATATCACCGGCACCAAGC
CCAGGTACCTTGCGGTTTCGAGTCTACAAGGCGGCAAGGTGGGTAAAACC
ACATAGCCCTCTTCCTCACCGCGGGATTTTGCTGCCCTTTTTCATGGCTA
CAGTCAAGGAAGCCATACAGATCTATCCCCCGCCGTCCATGTGATCTCTA
TCGCATGATGAAGCATGCTGATTGGTTTAACTTTTAAGCTGAGCTATTGT
TGTCTGTTCGCAGCATCCTCCTAATCTCCACCCCGTCTCTCTTAGTGCTC
GTTTGGTCGCCGTCTGTCTGCCTCTTGCCCCCCTCTCAAGGCGAAAGCTG
AGCTTGATCTTCAGAGGGCACAAGTGGAGTGGGAGTCACAGGCGTTAGAC
AACCACAGGTGCCGCTAACGTCTGTGCCACGCGCGTTGCCTTCATCCCTG
CCCAGATTTTAGGAATGTGCTTCAGTAGAAGATAGGGCGTGAAGAAGGCA
AAAAGCTTCTGGTAGTAGAAACATTCCACTATGATGTGGAATGCCGCTCC
CCCTCTACCTGTAAATCTCTGTACATTTGTCCATGCGTCACATCCACCTC
TCTCTGCTTCTCTTTTGTGTGATTTTTGTTTCCGTTCTTTCTTGCCACCG
TGCCGTTCCATAGCGTCTTTACGATTGCGGAGAACCGCCGCCGACCGTAA
TAAGTCAGGCTGTGTCCGCTTGTTTCTTTGGGTTCATTCCGTCACGTCCC
GCATCGACGTGAACAAGAAGGAGTAAGCCCACCCACGCCTCAAGCCCCCC
CTGCCCCGCCGAGCTACGATGCAAGTATGTTCGCGACCTCTAGGCTTTCT
GAGCACGGGAACCCAGCTCTGTTCATGTTGGAACTTTTTATACTGTTTCT
CATTCGTATGATCATACCTCTACTGCTACTTCTTCGTGTGCCGTAGATCG
ACGGTGGCTAGGGACAACACCCGACAGGCCGAGCTGCTGGACAACCACAT
GCAGGACTTGGCCCAGCTGGCCAAGCTGAAAGAAGACAATGAGGTTCTAA
AGAAGGGGCAGGATCAGCTGCGGTGAGCCGATCACTCGCTTTCATCGAGC
GATGTGCACAGCTTTTTCCTCTCGCCTGTTGCACTTTGGTCGGAAAGGAC
TAGCGGCATAGCGGCGTTGAGTGTGAAAGGAAACGCCCGGTCCCGGCCTT
CACTCACCAGCTTGCAGCGTTTTCAATCCTCGCAGAGACAATTGGTCACA
CCCAACCGCTCTCCGGTTCACTTGGGATCGCATTTGTGCCACATTGTATC
TTGGAACGTGATCATTACCGTGCACTGATGCGAACCACGGCGAGAACGTT
TTCGACCGTCAAAGCGAAGGGAAGCCAACCGAACGGATTCTGTACTTGTC
TCTGTCTCTCTCTCTGTCAATGCCTCTCTCGCTCTCGCTCTTGCTGTTGC
TCTCTCTCTCCCTCTCTCTCTCCCTCTCTCTCTCCCTCTCTCTCCCTCTT
GCTCTCTCGCTCGCGCTCTTTGAATTTTACGCCTCTTGTTCACTCTCGCC
CGTATCTCTATCGTTAAGCCAATTCACCTACACCTCGTTTCGTCTTCCAT
ACTAAGTATGCTCCACGCCCCCTCCCCTCTATCTTTTTCTGAAGGGTGGA
GGTGAAGAAGTGCGAGCGGCGATGTGAGCAGGCTCAGGAAGAAACCGCGC
GCAAGGAGGAGGACCTGGCGGCCAGCCGGGACGAACTGGTGGAAGCGAGC
GAAGAGCTGGACAGGTTGCGTCGCAAGTTCCGCGATCAGCTAGAGAATTT
GGTCAGCGGCAAGGTGCGCAATAGTTTCTGCGTTGTTTGTGAACGGTTCA
CCCAGCACCATCTACATAGCTGATGGATTTCGAAATCCGAGCCCCTGCAC
GACATGCTCCAGCGGTTTGGCTGTTTGGCTGATGTACATAGCAGCAAATG
GTTGTTGCATAAGAATTAGCAGCAGCAACACGGCGAAGGCCTAGGCGAAT
AGCTCCCAATTTCCCAAAGAAAGCTGCAACACTGAATGTTAGTTGTTAGC
GGCTGAGCGACCGGGCGAACACTGCTCCAAATCCCCCGCGGTTGGGCCGA
TGTGCGCAACAAACTCCAGGCTGGAACGAAAGCTTCCCGAAGAAAGAAGG
ACGATCAGAACAACGACGGCGGTAGCGGTGATGCAAACAAGAGAGCGGCG
CTGGAAGAGATGGTGGGCTCGTACAAGGAGAGGGAGGAAAGGTCTACGGC
GGACGCCAGGCGCCTGAGGGAAGAAGCCAGAGACGCAAAGCTCAAGAACC
GGGCTCTGTTTGATAGGTCAGAGGGAAGTTGGAGAAAACAACAGCAGAGA
GGAAACAACGCATGCCGGACGTTGATCAATAGGGTTTGTGTGTACCCGCA
AACATGTGGCATGAACGTAGCGGTTTTTGCAGGGTTTATCGCAAAGACGC
TACGAACTTGTCGAAGTGGACCGACTTTGCCGACGAAGCTCCTCGCTTCG
GGGGGGGGAGGCGTGTACTCATAGCCTAACATGCCGTAGTCGCTAGTCCG
TTGACCTCGCATCCCTCCAAAGCCGGGACGGCGCACACCGGGTTTCACCG
GAGGGGTATTTGTCAGGGGAAATGTATCGGCGCGAAGCTCCCGTTTTCCA
GTGGAGCTGGAACCAGTTGCCTCTCCAGCAATGTTTGTTTTCAGGCACTT
CGTTGGAGGCGCGATAGTGTCGAATCCGCTGTACGAAAAGTGCCCCGTCA
TTCATGCCTCAGTCTGTACTGACACCCACACAATCCATGCGATTGAACAG
GTACAAGCAGCTTCGTGGGATCTTCGAGGATTCCCTCGGGGAGGGTGAGC
TTCCTCCTGACCTCCCCTCCGACGACAAGCTCATCGCGGCGGGCGCAGTA
GCGGCGGGGGGGCGGGAGTCCGATACCGAGGCACAATCCGCCTTGAAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13481:7..3854-

>mRNA_Ecto-sp13_S_contig13481.2773.1 ID=mRNA_Ecto-sp13_S_contig13481.2773.1|Name=mRNA_Ecto-sp13_S_contig13481.2773.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=993bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13481:7..3854- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGAAAAACTGAAGGAAGCAGAAAACGCGGCACAGGAGTTGCGCGAGGG
CTTCGGGGCGGAGGAGTCAAAGAGTGTCGAGATGGCCGCGGAGCTTCTTA
CTCTCGTGAACCAGAAAACTCATCTTGAAACGGTGAAAGAAGATCTCGAA
CGGCAAGTGGATGACTTCTCCTCGAGGGTTCGTATGCTGGAGCTTGACCT
GAGAACCGCAAGGGACGACATGCGCGGTCTGAGAGAGGATACAGAGGTGG
CTCAGAAGAAGGCTGGCGTCTTGGAAATCGCAAAGGCGAAAGCTGAGCTT
GATCTTCAGAGGGCACAAGTGGAGTGGGAGTCACAGGCGTTAGACAACCA
CAGATCGACGGTGGCTAGGGACAACACCCGACAGGCCGAGCTGCTGGACA
ACCACATGCAGGACTTGGCCCAGCTGGCCAAGCTGAAAGAAGACAATGAG
GTTCTAAAGAAGGGGCAGGATCAGCTGCGGGTGGAGGTGAAGAAGTGCGA
GCGGCGATGTGAGCAGGCTCAGGAAGAAACCGCGCGCAAGGAGGAGGACC
TGGCGGCCAGCCGGGACGAACTGGTGGAAGCGAGCGAAGAGCTGGACAGG
TTGCGTCGCAAGTTCCGCGATCAGCTAGAGAATTTGGTCAGCGGCAAGGC
TGGAACGAAAGCTTCCCGAAGAAAGAAGGACGATCAGAACAACGACGGCG
GTAGCGGTGATGCAAACAAGAGAGCGGCGCTGGAAGAGATGGTGGGCTCG
TACAAGGAGAGGGAGGAAAGGTCTACGGCGGACGCCAGGCGCCTGAGGGA
AGAAGCCAGAGACGCAAAGCTCAAGAACCGGGCTCTGTTTGATAGGTACA
AGCAGCTTCGTGGGATCTTCGAGGATTCCCTCGGGGAGGGTGAGCTTCCT
CCTGACCTCCCCTCCGACGACAAGCTCATCGCGGCGGGCGCAGTAGCGGC
GGGGGGGCGGGAGTCCGATACCGAGGCACAATCCGCCTTGAAA
back to top