mRNA_Ecto-sp13_S_contig1347.2764.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1347.2764.1 vs. uniprot
Match: D8LCD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCD6_ECTSI) HSP 1 Score: 292 bits (748), Expect = 1.020e-95 Identity = 153/184 (83.15%), Postives = 165/184 (89.67%), Query Frame = 1
Query: 1 VLKDVPDLATGTAEGGSSDDSLGLQLKRGMAIVARAFDVWWANRIDTLDMDIVTTLHTSMEVDVGLQLTVK-VAREAVVGPHRSPSTLPPYVPQEIMRPACSLGYIVGMAMDDMANDGNANRTDLTETFARIATEAAEAQGRPNHTDITDMLVWKASCPHYNVQVTSGALANALASEFRLD*AK 549
+LKDVPD AT TAEGGS+ DSLGL+LKRG+AIVARAFDVWWA+R D DMDIVTTLH+SM DVGLQLT+ AREA+V PH SPSTLPPYVPQ+IMRPACS GYIVGMAMDDMANDGNA RTDLTETFARI+TEAAEAQGRPNHTDITD+LVWKASCPHYNVQV SG LANALASEF LD +K
Sbjct: 1 MLKDVPDSATRTAEGGSNKDSLGLELKRGVAIVARAFDVWWASRNDFPDMDIVTTLHSSM--DVGLQLTLMDSAREALVDPHHSPSTLPPYVPQDIMRPACSQGYIVGMAMDDMANDGNAKRTDLTETFARISTEAAEAQGRPNHTDITDILVWKASCPHYNVQVKSGPLANALASEFGLDLSK 182
BLAST of mRNA_Ecto-sp13_S_contig1347.2764.1 vs. uniprot
Match: A0A6H5KZR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZR7_9PHAE) HSP 1 Score: 299 bits (766), Expect = 1.800e-92 Identity = 155/184 (84.24%), Postives = 162/184 (88.04%), Query Frame = 1
Query: 1 VLKDVPDLATGTAEGGSSDDSLGLQLKRGMAIVARAFDVWWANRIDTLDMDIVTTLHTSMEVDVGLQLTVK-VAREAVVGPHRSPSTLPPYVPQEIMRPACSLGYIVGMAMDDMANDGNANRTDLTETFARIATEAAEAQGRPNHTDITDMLVWKASCPHYNVQVTSGALANALASEFRLD*AK 549
+LKD+P TG AEGGS++DSLGLQLKRGMAIVARAFDVWWA R D DMDIVTTLHTSME DVGLQLT+ AREAVV PH SPSTLPPYVPQ+IMRPACSLGYIVGMAMDDMANDGNANRTDLT FARIA EAAEAQGRPNH DI DMLVWKASCPHYNVQV SGALANALASEF LD +K
Sbjct: 580 MLKDMPGSVTGRAEGGSNEDSLGLQLKRGMAIVARAFDVWWATRNDFPDMDIVTTLHTSMEFDVGLQLTLMDSAREAVVDPHHSPSTLPPYVPQDIMRPACSLGYIVGMAMDDMANDGNANRTDLTAAFARIAAEAAEAQGRPNHIDIADMLVWKASCPHYNVQVKSGALANALASEFGLDLSK 763
BLAST of mRNA_Ecto-sp13_S_contig1347.2764.1 vs. uniprot
Match: A0A6H5JYG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYG3_9PHAE) HSP 1 Score: 269 bits (687), Expect = 4.430e-80 Identity = 140/181 (77.35%), Postives = 152/181 (83.98%), Query Frame = 1
Query: 1 VLKDVPDLATGTAEGGSSDDSLGLQLKRGMAIVARAFDVWWANRIDTLDMDIVTTLHTSMEVDVGLQLTV-KVAREAVVGPHRSPSTLPPYVPQEIMRPACSLGYIVGMAMDDMANDGNANRTDLTETFARIATEAAEAQGRPNHTDITDMLVWKASCPHYNVQVTSGALANALASEFRLD 540
+LKDV LATGT EGG ++DSLGL LKRGMAIVARAFDV WANR DMDIV TLH SME DVGLQLT+ K A+EAV G H PSTLPPYVPQ+IMRPACSLGYIVGMAMDD N+G++NRTDLT+T+A IATEAAEAQGRPNHT I +LVWKASCPHYNV V SGALANALAS F LD
Sbjct: 594 ILKDVSGLATGTVEGGCNEDSLGLHLKRGMAIVARAFDVSWANRNGFSDMDIVATLHQSMEFDVGLQLTLMKSAQEAVGGAHHPPSTLPPYVPQDIMRPACSLGYIVGMAMDDKGNNGHSNRTDLTDTYASIATEAAEAQGRPNHTSIAGILVWKASCPHYNVHVQSGALANALASTFGLD 774
BLAST of mRNA_Ecto-sp13_S_contig1347.2764.1 vs. uniprot
Match: D7FH85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH85_ECTSI) HSP 1 Score: 265 bits (676), Expect = 1.230e-77 Identity = 138/181 (76.24%), Postives = 151/181 (83.43%), Query Frame = 1
Query: 1 VLKDVPDLATGTAEGGSSDDSLGLQLKRGMAIVARAFDVWWANRIDTLDMDIVTTLHTSMEVDVGLQLTV-KVAREAVVGPHRSPSTLPPYVPQEIMRPACSLGYIVGMAMDDMANDGNANRTDLTETFARIATEAAEAQGRPNHTDITDMLVWKASCPHYNVQVTSGALANALASEFRLD 540
+L DV LATGT EGG ++DSLGL LKRG+AIVARAFDV WANR +MDIV TLH SME DVGLQLT+ K AR+AV H PSTLPPYVPQ+IMRPACSLGYIVGMAM+DM N+G+ANRTDLT+T+A IATEAAEAQGRPNHT I MLVWKASCPHYNV V SGALANALAS F LD
Sbjct: 786 ILSDVRGLATGTVEGGCNEDSLGLHLKRGLAIVARAFDVSWANRNGFPNMDIVATLHQSMEFDVGLQLTLMKSARDAVEDAHHPPSTLPPYVPQDIMRPACSLGYIVGMAMEDMGNNGHANRTDLTDTYASIATEAAEAQGRPNHTSIAGMLVWKASCPHYNVNVQSGALANALASTFGLD 966
BLAST of mRNA_Ecto-sp13_S_contig1347.2764.1 vs. uniprot
Match: A0A6H5K680_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K680_9PHAE) HSP 1 Score: 180 bits (457), Expect = 3.280e-50 Identity = 103/181 (56.91%), Postives = 125/181 (69.06%), Query Frame = 1
Query: 1 VLKDVPDLATGTAEGGSSDDSLGLQLKRGMAIVARAFDVWWANRIDTLDMDIVTTLHTSMEVDVGLQLTVK-VAREAVVGPHRSPSTLPPYVPQEIMRPACSLGYIVGMAMDDMANDGNANRTDLTETFARIATEAAEAQGRPNHTDITDMLVWKASCPHYNVQVTSGALANALASEFRLD 540
+LK VP LAT A GG++++++GLQLKRG+AIVARAFDVWWA+R + +M IV TLH SME DVGLQ+ + AREA PH ++MRPACSLGYI+GMAM+++ D N NRTDL E F A EAA R NH I M VWK SCPHYNV+V +G LANALA E+ LD
Sbjct: 207 MLKKVPGLATTPAAGGTNEEAMGLQLKRGIAIVARAFDVWWASRNEFSEMHIVATLHRSMEFDVGLQIAMNNSAREAGGEPHXXXXXXXSMAAPDMMRPACSLGYIIGMAMENIDTDRNVNRTDLMEIFDGDA-EAA----RVNHIHIDGMDVWKDSCPHYNVRVKAGPLANALAVEYGLD 382
BLAST of mRNA_Ecto-sp13_S_contig1347.2764.1 vs. uniprot
Match: D8LPX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPX3_ECTSI) HSP 1 Score: 179 bits (454), Expect = 8.850e-49 Identity = 104/181 (57.46%), Postives = 124/181 (68.51%), Query Frame = 1
Query: 1 VLKDVPDLATGTAEGGSSDDSLGLQLKRGMAIVARAFDVWWANRIDTLDMDIVTTLHTSMEVDVGLQL-TVKVAREAVVGPHRSPSTLPPYVPQEIMRPACSLGYIVGMAMDDMANDGNANRTDLTETFARIATEAAEAQGRPNHTDITDMLVWKASCPHYNVQVTSGALANALASEFRLD 540
+LK VP AT A GG++++++GLQLKRG+AIVARAFDVWWA+R + +M IV TLH SME DVGLQ+ T AREA PH S S + MRPACSLGYIVGMAM+ + D N NRTDL F +A EAA R +H I M VWK SCPHYNV+V +G LANALA E+ LD
Sbjct: 197 MLKKVPGSATTPAAGGTNEETMGLQLKRGIAIVARAFDVWWASRNEFSEMHIVATLHRSMEFDVGLQIATNNSAREAGGEPHPSSSASSSTAAPDTMRPACSLGYIVGMAMESIDTDRNVNRTDLMNIFDGVA-EAA----RVDHIHIDGMDVWKDSCPHYNVRVKAGPLANALAVEYGLD 372
BLAST of mRNA_Ecto-sp13_S_contig1347.2764.1 vs. uniprot
Match: A0A6H5LA20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA20_9PHAE) HSP 1 Score: 156 bits (395), Expect = 4.100e-42 Identity = 102/225 (45.33%), Postives = 124/225 (55.11%), Query Frame = 1
Query: 1 VLKDVPDLATGTAEGGSSDDSLGLQLKRGMAIVARAFDVWWANRIDTLDM--------------------------------------------DIVTTLHTSMEVDVGLQLTVK-VAREAVVGPHRSPSTLPPYVPQEIMRPACSLGYIVGMAMDDMANDGNANRTDLTETFARIATEAAEAQGRPNHTDITDMLVWKASCPHYNVQVTSGALANALASEFRLD 540
+LK VP LAT A GG++++++GLQLKRG+A VARAFDVWWA+R + +M IV TLH SME DVGLQ+ + AREA PH ++MRPACSLGYI+GMAM+++ D NANRTDL E F A EAA R NH I M VWK SCPHYNV+V + LANALA E+ LD
Sbjct: 53 MLKTVPGLATTPAAGGTNEEAMGLQLKRGIATVARAFDVWWASRNEFSEMVRACRGSNKQSTLACLRFISQQWRSFHHHQLLRRPISFQPNSSQHIVATLHRSMEFDVGLQIAMNNSAREAGGEPHXXXXXXXSMAAPDMMRPACSLGYIIGMAMENIDTDRNANRTDLMEIFDGDA-EAA----RVNHIHIHGMDVWKVSCPHYNVRVKADPLANALAVEYGLD 272 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1347.2764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1347.2764.1 >prot_Ecto-sp13_S_contig1347.2764.1 ID=prot_Ecto-sp13_S_contig1347.2764.1|Name=mRNA_Ecto-sp13_S_contig1347.2764.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=152bp MAIVARAFDVWWANRIDTLDMDIVTTLHTSMEVDVGLQLTVKVAREAVVGback to top mRNA from alignment at Ecto-sp13_S_contig1347:10833..14125+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1347.2764.1 ID=mRNA_Ecto-sp13_S_contig1347.2764.1|Name=mRNA_Ecto-sp13_S_contig1347.2764.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3293bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1347:10833..14125+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1347:10833..14125+ >mRNA_Ecto-sp13_S_contig1347.2764.1 ID=mRNA_Ecto-sp13_S_contig1347.2764.1|Name=mRNA_Ecto-sp13_S_contig1347.2764.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1347:10833..14125+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |