mRNA_Ecto-sp13_S_contig13468.2763.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13468.2763.1
Unique NamemRNA_Ecto-sp13_S_contig13468.2763.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13468.2763.1 vs. uniprot
Match: A0A6H5JXS0_9PHAE (GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXS0_9PHAE)

HSP 1 Score: 220 bits (560), Expect = 9.070e-65
Identity = 108/117 (92.31%), Postives = 112/117 (95.73%), Query Frame = 1 
Query:    1 ISKIRIDDAAAERVFPSAQVGAPCSIVTFEGLGPLDGDYALLEDQADTIQRRPAWISTSEKNGGHMALTYNDIQGVWTIGGAYDRSSAFVEVDSALPPAHSSMWNVYNGDSSDFERV 351
            +SKIRID AAAERVFPSAQVGAPCSIVT EGLGPLDGDYA LEDQADTIQRRPAWIS+SEK GGHMAL YNDIQGVWTIGGA+DRSSAFV+VDSALPPAHSSMWNVYNGDSSDFERV
Sbjct:   33 MSKIRID-AAAERVFPSAQVGAPCSIVTVEGLGPLDGDYAFLEDQADTIQRRPAWISSSEKTGGHMALEYNDIQGVWTIGGAHDRSSAFVQVDSALPPAHSSMWNVYNGDSSDFERV 148
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13468.2763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JXS0_9PHAE9.070e-6592.31GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13468contigEcto-sp13_S_contig13468:3929..4279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size353
Hectar predicted targeting categoryother localisation
Exons1
Cds size351
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462719.0975022-CDS-Ecto-sp13_S_contig13468:3928..42791681462719.0975022-CDS-Ecto-sp13_S_contig13468:3928..4279Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13468 3929..4279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13468.2763.1prot_Ecto-sp13_S_contig13468.2763.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13468 3929..4279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13468.2763.1

>prot_Ecto-sp13_S_contig13468.2763.1 ID=prot_Ecto-sp13_S_contig13468.2763.1|Name=mRNA_Ecto-sp13_S_contig13468.2763.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
ISKIRIDDAAAERVFPSAQVGAPCSIVTFEGLGPLDGDYALLEDQADTIQ
RRPAWISTSEKNGGHMALTYNDIQGVWTIGGAYDRSSAFVEVDSALPPAH
SSMWNVYNGDSSDFERV
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mRNA from alignment at Ecto-sp13_S_contig13468:3929..4279+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13468.2763.1 ID=mRNA_Ecto-sp13_S_contig13468.2763.1|Name=mRNA_Ecto-sp13_S_contig13468.2763.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13468:3929..4279+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATATCGAAAATAAGAATTGATGATGCTGCCGCCGAGCGGGTATTTCCGAG
CGCCCAGGTTGGCGCACCTTGCTCAATTGTCACTTTTGAAGGCCTCGGAC
CTCTAGATGGCGATTATGCCTTGCTCGAGGACCAAGCTGACACGATCCAA
CGTAGACCAGCCTGGATAAGCACGTCGGAAAAAAATGGTGGACATATGGC
GCTGACATACAACGATATCCAAGGGGTGTGGACGATTGGCGGGGCTTACG
ACCGGAGTTCCGCGTTCGTGGAGGTCGACTCAGCCCTTCCTCCTGCGCAC
AGCTCGATGTGGAACGTTTACAACGGCGATTCATCCGATTTTGAGAGGGT
C
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13468:3929..4279+

>mRNA_Ecto-sp13_S_contig13468.2763.1 ID=mRNA_Ecto-sp13_S_contig13468.2763.1|Name=mRNA_Ecto-sp13_S_contig13468.2763.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13468:3929..4279+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATATCGAAAATAAGAATTGATGATGCTGCCGCCGAGCGGGTATTTCCGAG
CGCCCAGGTTGGCGCACCTTGCTCAATTGTCACTTTTGAAGGCCTCGGAC
CTCTAGATGGCGATTATGCCTTGCTCGAGGACCAAGCTGACACGATCCAA
CGTAGACCAGCCTGGATAAGCACGTCGGAAAAAAATGGTGGACATATGGC
GCTGACATACAACGATATCCAAGGGGTGTGGACGATTGGCGGGGCTTACG
ACCGGAGTTCCGCGTTCGTGGAGGTCGACTCAGCCCTTCCTCCTGCGCAC
AGCTCGATGTGGAACGTTTACAACGGCGATTCATCCGATTTTGAGAGGGT
C
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