mRNA_Ecto-sp13_S_contig1346.2758.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1346.2758.1
Unique NamemRNA_Ecto-sp13_S_contig1346.2758.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1346.2758.1 vs. uniprot
Match: A0A6H5KX67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX67_9PHAE)

HSP 1 Score: 293 bits (751), Expect = 7.140e-93
Identity = 159/190 (83.68%), Postives = 167/190 (87.89%), Query Frame = 1 
Query:    1 RPPWWAKTGLPAGMMVHPQHHRSTEAPRMVECFSRDSTYGGDGIRDHDNDNSDYSGHREQQPRRRQWWTLSHARSPGRIGMTAAATNSGYHGWQQHAHSGGAFSGNXXXXXXXXXDG--ICAAELEVVRRIGSGPPTACRGTLPTIVYNSHDRSSSLWLSTRPFPERTQWRSNVRANVAPRAGGGGGGAA 564
            RPPWWAKTGLPAGMMVHPQ H S +AP MV CFSRDSTYGGDGIRD+DNDNSDYS HREQQP RRQWWTLS ARSPGRIGM+AAA NSG HGWQ++AHSGGAFSG+XXXXXXXXX    I  AELEVVRRIG+GPPTAC GT PT VY+SHDRSSSL LSTR FPERTQWRSNVRANVAPRAGG GG AA
Sbjct:  500 RPPWWAKTGLPAGMMVHPQQHHSAKAPPMVGCFSRDSTYGGDGIRDYDNDNSDYSRHREQQPWRRQWWTLSQARSPGRIGMSAAAANSGNHGWQKYAHSGGAFSGSXXXXXXXXXXXXXIRTAELEVVRRIGNGPPTACSGT-PTFVYSSHDRSSSLCLSTRLFPERTQWRSNVRANVAPRAGGRGGAAA 688
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BLAST of mRNA_Ecto-sp13_S_contig1346.2758.1 vs. uniprot
Match: D8LM17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM17_ECTSI)

HSP 1 Score: 269 bits (687), Expect = 1.800e-82
Identity = 148/190 (77.89%), Postives = 153/190 (80.53%), Query Frame = 1 
Query:    4 PPWWAKTGLPAGMMVHPQHHRSTEAPRMVECFSRDSTYG--GDGIRDHDNDNSDYSGHREQQPRRRQWWTLSHARSPGRIGMTAAATNSGYHGWQQHAHSGG-AFSGNXXXXXXXXXDGICAAELEVVRRIGSGPPTACRGTLPTIVYNSHDRSSSLWLSTRPFPERTQWRSNVRANVAPRAGGGGGGAA 564
            PPWWAKTGLPAG  +HPQHHRS +APRM+ CF RDSTYG  GD    HDNDNSDYSGHREQQPRR+QWW LS A SPGR G TA A NS  HGWQQ+AHSGG AFSGNXXXXXXXX   I AAELE V RIGSGPP AC GT PTI YNSHDRSSSL LSTRPFPE TQWRSNVRANVAPR  G GG AA
Sbjct:  574 PPWWAKTGLPAGTRIHPQHHRSAKAPRMMGCFLRDSTYGSGGDYYSGHDNDNSDYSGHREQQPRRQQWWALSQADSPGRTGRTAVAANSSNHGWQQYAHSGGGAFSGNXXXXXXXX---IRAAELEGVHRIGSGPPAACGGTPPTIAYNSHDRSSSLRLSTRPFPETTQWRSNVRANVAPRVRGRGGAAA 760
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1346.2758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KX67_9PHAE7.140e-9383.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LM17_ECTSI1.800e-8277.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1346contigEcto-sp13_S_contig1346:8434..9000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size567
Hectar predicted targeting categoryother localisation
Exons1
Cds size567
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462718.8638735-CDS-Ecto-sp13_S_contig1346:8433..90001681462718.8638735-CDS-Ecto-sp13_S_contig1346:8433..9000Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1346 8434..9000 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1346.2758.1prot_Ecto-sp13_S_contig1346.2758.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1346 8434..9000 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1346.2758.1

>prot_Ecto-sp13_S_contig1346.2758.1 ID=prot_Ecto-sp13_S_contig1346.2758.1|Name=mRNA_Ecto-sp13_S_contig1346.2758.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=189bp
RPPWWAKTGLPAGMMVHPQHHRSTEAPRMVECFSRDSTYGGDGIRDHDND
NSDYSGHREQQPRRRQWWTLSHARSPGRIGMTAAATNSGYHGWQQHAHSG
GAFSGNGGGGGGGGGDGICAAELEVVRRIGSGPPTACRGTLPTIVYNSHD
RSSSLWLSTRPFPERTQWRSNVRANVAPRAGGGGGGAA*
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mRNA from alignment at Ecto-sp13_S_contig1346:8434..9000+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1346.2758.1 ID=mRNA_Ecto-sp13_S_contig1346.2758.1|Name=mRNA_Ecto-sp13_S_contig1346.2758.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=567bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1346:8434..9000+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCCGCCATGGTGGGCAAAGACAGGTCTGCCTGCGGGAATGATGGTACA
TCCGCAGCACCACCGCTCGACCGAGGCGCCTCGGATGGTGGAATGTTTCT
CGCGCGACAGCACATACGGCGGTGATGGTATTCGTGACCACGACAACGAC
AACAGCGACTACTCCGGACACCGAGAACAGCAGCCGCGGCGACGGCAGTG
GTGGACGCTTTCGCACGCACGCAGCCCAGGACGAATCGGGATGACAGCGG
CGGCAACGAACAGCGGTTATCACGGCTGGCAGCAGCACGCGCACAGCGGC
GGCGCCTTCAGCGGCAATGGTGGCGGCGGTGGCGGCGGTGGCGGCGACGG
CATCTGTGCAGCGGAATTGGAAGTCGTTCGTCGGATTGGCAGCGGGCCGC
CCACCGCGTGTAGAGGTACTCTGCCTACTATTGTTTACAATTCCCACGAC
CGCTCCTCTTCTCTGTGGTTGTCGACTCGCCCTTTTCCTGAGAGGACGCA
GTGGCGCTCCAACGTTCGGGCGAACGTGGCACCTCGGGCCGGGGGGGGGG
GGGGGGGGGCGGCATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1346:8434..9000+

>mRNA_Ecto-sp13_S_contig1346.2758.1 ID=mRNA_Ecto-sp13_S_contig1346.2758.1|Name=mRNA_Ecto-sp13_S_contig1346.2758.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=567bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1346:8434..9000+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCCGCCATGGTGGGCAAAGACAGGTCTGCCTGCGGGAATGATGGTACA
TCCGCAGCACCACCGCTCGACCGAGGCGCCTCGGATGGTGGAATGTTTCT
CGCGCGACAGCACATACGGCGGTGATGGTATTCGTGACCACGACAACGAC
AACAGCGACTACTCCGGACACCGAGAACAGCAGCCGCGGCGACGGCAGTG
GTGGACGCTTTCGCACGCACGCAGCCCAGGACGAATCGGGATGACAGCGG
CGGCAACGAACAGCGGTTATCACGGCTGGCAGCAGCACGCGCACAGCGGC
GGCGCCTTCAGCGGCAATGGTGGCGGCGGTGGCGGCGGTGGCGGCGACGG
CATCTGTGCAGCGGAATTGGAAGTCGTTCGTCGGATTGGCAGCGGGCCGC
CCACCGCGTGTAGAGGTACTCTGCCTACTATTGTTTACAATTCCCACGAC
CGCTCCTCTTCTCTGTGGTTGTCGACTCGCCCTTTTCCTGAGAGGACGCA
GTGGCGCTCCAACGTTCGGGCGAACGTGGCACCTCGGGCCGGGGGGGGGG
GGGGGGGGGCGGCATAA
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