mRNA_Ecto-sp13_S_contig1346.2757.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1346.2757.1
Unique NamemRNA_Ecto-sp13_S_contig1346.2757.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1346.2757.1 vs. uniprot
Match: A0A6H5KX67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX67_9PHAE)

HSP 1 Score: 323 bits (828), Expect = 1.160e-103
Identity = 183/229 (79.91%), Postives = 191/229 (83.41%), Query Frame = 1 
Query:    1 PWEGNAGRGQPRGRHGNQNGNCRWTAPSSAPSSPHGSSCRTGGRAPPRKDGRVYLRRSDRSRSPPDISSPSWPSPRERVSRETVDGGSICPVLPGRGGEDGRTATMVVAAQRATNEGNNTDAGLVARRFSSGGVGGSGVGXXXXXXXXXXXXDNGWPPDSSATAGHQEMARSREQSSRPRQQLRRFSTGCAPFRLKSATLPPHFGMEDHEQQMFLPLRAAHNQAVEFMT 687
            PWEGNAGR QP GRHGN+N  CRWTAPSSAPSS  GS CRTGGRAPP K   VYLR S+R RSPPDISSPSWPSP E+VSRET DGG +C +LPGRGGED RTA MVVAAQRATNEGNNT A  VARRFSSGGV G       XXXXXXXXXDNGWPPD SATA H+EMARSREQ+SRPRQQLRRFS GC PFRLK A LPPHFGMEDHEQQM LPLRAA NQA+EFMT
Sbjct:  245 PWEGNAGREQPVGRHGNENDRCRWTAPSSAPSSLRGSCCRTGGRAPPPKREGVYLRWSERCRSPPDISSPSWPSPGEKVSRETDDGGGMCTMLPGRGGEDRRTANMVVAAQRATNEGNNTAASPVARRFSSGGVSGX------XXXXXXXXXDNGWPPDPSATADHEEMARSREQASRPRQQLRRFSNGCVPFRLKPAILPPHFGMEDHEQQMSLPLRAARNQAMEFMT 467
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BLAST of mRNA_Ecto-sp13_S_contig1346.2757.1 vs. uniprot
Match: D8LM17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM17_ECTSI)

HSP 1 Score: 288 bits (737), Expect = 3.950e-89
Identity = 168/229 (73.36%), Postives = 175/229 (76.42%), Query Frame = 1 
Query:    1 PWEGNAGRGQPRGRHGNQNGNCRWTAPSSAPSSPHGSSCRTGGRAPPRKDGRVYLRRSDRSRSPPDISSPSWPSPRERVSRETVDGGSICPVLPGRGGEDGRTATMVVAAQRATNEGNNTDAGLVARRFSSGGVGGSGVGXXXXXXXXXXXXDNGWPPDSSATAGHQEMARSREQSSRPRQQLRRFSTGCAPFRLKSATLPPHFGMEDHEQQMFLPLRAAHNQAVEFMT 687
            PWEGNAGRGQP GRHGN+NG+CRWTAPSS PSSPH SSCRTGGRAPPRK   VYLRRS+RSRSPPDISSPSWPSPRERVSRET DGG +C V PGRGGED RTA                                    XXXXXXXXXXXXD+GWPPD SATAGH+EM RSREQ+SR RQQLRRFSTGCAPFRLK ATLPPHFGMEDHEQQMFLPL A  NQAVEFMT
Sbjct:  320 PWEGNAGRGQPVGRHGNENGHCRWTAPSSVPSSPHDSSCRTGGRAPPRKHEGVYLRRSERSRSPPDISSPSWPSPRERVSRETADGGDMCTVFPGRGGEDRRTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXXXXXDSGWPPDPSATAGHEEMDRSREQASRSRQQLRRFSTGCAPFRLKPATLPPHFGMEDHEQQMFLPLGATDNQAVEFMT 542
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1346.2757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KX67_9PHAE1.160e-10379.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LM17_ECTSI3.950e-8973.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1346contigEcto-sp13_S_contig1346:7636..8322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size689
Hectar predicted targeting categoryother localisation
Exons1
Cds size687
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462718.8334398-CDS-Ecto-sp13_S_contig1346:7635..83221681462718.8334398-CDS-Ecto-sp13_S_contig1346:7635..8322Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1346 7636..8322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1346.2757.1prot_Ecto-sp13_S_contig1346.2757.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1346 7636..8322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1346.2757.1

>prot_Ecto-sp13_S_contig1346.2757.1 ID=prot_Ecto-sp13_S_contig1346.2757.1|Name=mRNA_Ecto-sp13_S_contig1346.2757.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=229bp
PWEGNAGRGQPRGRHGNQNGNCRWTAPSSAPSSPHGSSCRTGGRAPPRKD
GRVYLRRSDRSRSPPDISSPSWPSPRERVSRETVDGGSICPVLPGRGGED
GRTATMVVAAQRATNEGNNTDAGLVARRFSSGGVGGSGVGGGSGVGGGSG
GGDNGWPPDSSATAGHQEMARSREQSSRPRQQLRRFSTGCAPFRLKSATL
PPHFGMEDHEQQMFLPLRAAHNQAVEFMT
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mRNA from alignment at Ecto-sp13_S_contig1346:7636..8322+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1346.2757.1 ID=mRNA_Ecto-sp13_S_contig1346.2757.1|Name=mRNA_Ecto-sp13_S_contig1346.2757.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=687bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1346:7636..8322+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGTGGGAAGGGAACGCAGGGCGGGGCCAGCCGAGGGGTAGACACGGCAA
CCAGAACGGTAATTGCCGCTGGACAGCGCCGTCGAGCGCGCCTTCGTCAC
CGCATGGCTCTTCTTGCCGCACGGGAGGACGCGCGCCCCCCCGCAAGGAC
GGACGAGTCTACCTCCGGAGGAGCGATAGAAGCCGCAGCCCGCCCGACAT
CAGCTCTCCGTCTTGGCCTTCTCCTCGAGAGAGGGTTTCCAGAGAAACCG
TCGACGGAGGCAGCATATGCCCCGTGCTTCCAGGGCGAGGCGGAGAGGAC
GGCCGGACGGCCACCATGGTCGTCGCGGCCCAACGTGCCACCAACGAGGG
CAACAACACTGATGCCGGCCTCGTTGCTAGGAGGTTCTCCTCCGGCGGCG
TCGGCGGCAGCGGAGTCGGCGGTGGCAGCGGAGTCGGCGGTGGCAGCGGT
GGCGGCGACAACGGCTGGCCGCCGGACTCGTCCGCTACCGCAGGCCACCA
GGAGATGGCCCGTTCTCGGGAGCAGAGTTCTCGCCCGCGACAGCAGCTGC
GGCGTTTCTCTACTGGGTGCGCGCCTTTCCGCCTGAAATCCGCCACCCTC
CCTCCTCACTTTGGCATGGAAGACCACGAGCAGCAAATGTTTCTTCCTCT
CCGCGCCGCCCACAATCAAGCGGTGGAGTTTATGACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1346:7636..8322+

>mRNA_Ecto-sp13_S_contig1346.2757.1 ID=mRNA_Ecto-sp13_S_contig1346.2757.1|Name=mRNA_Ecto-sp13_S_contig1346.2757.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=687bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1346:7636..8322+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGTGGGAAGGGAACGCAGGGCGGGGCCAGCCGAGGGGTAGACACGGCAA
CCAGAACGGTAATTGCCGCTGGACAGCGCCGTCGAGCGCGCCTTCGTCAC
CGCATGGCTCTTCTTGCCGCACGGGAGGACGCGCGCCCCCCCGCAAGGAC
GGACGAGTCTACCTCCGGAGGAGCGATAGAAGCCGCAGCCCGCCCGACAT
CAGCTCTCCGTCTTGGCCTTCTCCTCGAGAGAGGGTTTCCAGAGAAACCG
TCGACGGAGGCAGCATATGCCCCGTGCTTCCAGGGCGAGGCGGAGAGGAC
GGCCGGACGGCCACCATGGTCGTCGCGGCCCAACGTGCCACCAACGAGGG
CAACAACACTGATGCCGGCCTCGTTGCTAGGAGGTTCTCCTCCGGCGGCG
TCGGCGGCAGCGGAGTCGGCGGTGGCAGCGGAGTCGGCGGTGGCAGCGGT
GGCGGCGACAACGGCTGGCCGCCGGACTCGTCCGCTACCGCAGGCCACCA
GGAGATGGCCCGTTCTCGGGAGCAGAGTTCTCGCCCGCGACAGCAGCTGC
GGCGTTTCTCTACTGGGTGCGCGCCTTTCCGCCTGAAATCCGCCACCCTC
CCTCCTCACTTTGGCATGGAAGACCACGAGCAGCAAATGTTTCTTCCTCT
CCGCGCCGCCCACAATCAAGCGGTGGAGTTTATGACC
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