mRNA_Ecto-sp13_S_contig13458.2755.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13458.2755.1
Unique NamemRNA_Ecto-sp13_S_contig13458.2755.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13458.2755.1 vs. uniprot
Match: D7FSC3_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSC3_ECTSI)

HSP 1 Score: 355 bits (910), Expect = 6.750e-113
Identity = 191/195 (97.95%), Postives = 192/195 (98.46%), Query Frame = 1 
Query:   76 MDLKAADDPSLTEEGAWVPGSPLPAAPVQMIDVPQRAQTMLDDGMQVRSSAAPSENGGGAPASLAMFSTAGGISNVSVPRDGSVSGGDRGVRVAQEPDIYDVIEADNTAMERVTKSKARDIANSTPTHSSNHSIIGRGILKRGKSSRRPGSDSVRAGFSDVKSVSRFDPDEPPRSYLQSREESMLGEGSVAASPG 660
            M+LK ADDPSLTEEGAWVPGSPLPAAPVQMIDVPQRAQTMLDDGMQVRSSAAPSENGGGAPASLAMFSTAGGISNVSVPRDGSVSG DRGVR AQEPDIYDVIEADNTAMERVTKSKARDIANSTPTHSSNHSIIGRGILKRGKSSRRPGSDSVRAGFSDVKSVSRFDPDEPPRSYLQSREESMLGEGSVAASPG
Sbjct:    1 MNLKPADDPSLTEEGAWVPGSPLPAAPVQMIDVPQRAQTMLDDGMQVRSSAAPSENGGGAPASLAMFSTAGGISNVSVPRDGSVSG-DRGVRAAQEPDIYDVIEADNTAMERVTKSKARDIANSTPTHSSNHSIIGRGILKRGKSSRRPGSDSVRAGFSDVKSVSRFDPDEPPRSYLQSREESMLGEGSVAASPG 194
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13458.2755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSC3_ECTSI6.750e-11397.95Cellulose synthase (UDP-forming), family GT2 n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13458contigEcto-sp13_S_contig13458:1147..4598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size662
Hectar predicted targeting categoryother localisation
Exons4
Cds size585
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462718.65705-CDS-Ecto-sp13_S_contig13458:1146..12341681462718.65705-CDS-Ecto-sp13_S_contig13458:1146..1234Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13458 1147..1234 -
1681462718.6671805-CDS-Ecto-sp13_S_contig13458:3185..34281681462718.6671805-CDS-Ecto-sp13_S_contig13458:3185..3428Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13458 3186..3428 -
1681462718.6793869-CDS-Ecto-sp13_S_contig13458:3885..40521681462718.6793869-CDS-Ecto-sp13_S_contig13458:3885..4052Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13458 3886..4052 -
1681462718.6984012-CDS-Ecto-sp13_S_contig13458:4436..45231681462718.6984012-CDS-Ecto-sp13_S_contig13458:4436..4523Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13458 4437..4523 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462718.7068844-UTR-Ecto-sp13_S_contig13458:4523..45981681462718.7068844-UTR-Ecto-sp13_S_contig13458:4523..4598Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13458 4524..4598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13458.2755.1prot_Ecto-sp13_S_contig13458.2755.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13458 1147..4523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13458.2755.1

>prot_Ecto-sp13_S_contig13458.2755.1 ID=prot_Ecto-sp13_S_contig13458.2755.1|Name=mRNA_Ecto-sp13_S_contig13458.2755.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=195bp
MDLKAADDPSLTEEGAWVPGSPLPAAPVQMIDVPQRAQTMLDDGMQVRSS
AAPSENGGGAPASLAMFSTAGGISNVSVPRDGSVSGGDRGVRVAQEPDIY
DVIEADNTAMERVTKSKARDIANSTPTHSSNHSIIGRGILKRGKSSRRPG
SDSVRAGFSDVKSVSRFDPDEPPRSYLQSREESMLGEGSVAASPG
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mRNA from alignment at Ecto-sp13_S_contig13458:1147..4598-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13458.2755.1 ID=mRNA_Ecto-sp13_S_contig13458.2755.1|Name=mRNA_Ecto-sp13_S_contig13458.2755.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3452bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13458:1147..4598- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCACCTTCAAAACGCGCAGCAGTGAGACAGGCTCGGCTCTTGACGGCGC
GGCTGATTAAGAGCGGTGCAGAGAGATGGACCTCAAGGCGGCTGATGACC
CGAGCCTCACGGAGGAAGGGGCATGGGTTCCGGGTTCCCCGCTCCCAGCG
GCGCCCGTGCAGGTTGGTCGTTGGTGCACGCTTTTCCCGCAGCTCGGGTG
ATTGAAAGTTGCGACATATTTTTTCTGTTGTCTGCCTACCTTCGGTATGT
ATGGTCTGGCCGTTGTTCGTTTTGGCACGTTCTTTTGACAGTACTTGCTG
GTATGTCGCACAGGGAGAGCGAGAGAAATAGAGAGCTACGAGACCCGCCC
TCCTTCCCTTTCGTGGGGCTCCCAAGGCACCTCGGGCGTTCGTTCGTTCT
CTCATCAATGTCATCCAAGCAATTTTTTTGAAAATTGTTTAAGGGAAGCA
GCAAATAATATTCCTGCTTTCTTCCTCCGCTCTCTCTCTCTCTGTCTCTG
TGTTGGCTTGTCTGGCCACTGCCGCTCGCTCCTGATCGTTGGTCAGATGA
TCGACGTACCGCAGCGCGCGCAGACAATGCTCGACGACGGGATGCAAGTC
AGGAGCAGCGCCGCTCCCAGCGAGAACGGGGGGGGGGCGCCCGCGTCGTT
GGCTATGTTTAGCACCGCGGGGGGCATCTCAAACGTGTCGGTCCCACGCG
ATGGATCTGTCAGGTGAGAAGCGTTCGTAGACAGCGAGCGCCCGTGTCTT
TGCTCCGTATTTCTTGTGGCGTGCTCTGGGTTCCTGGAGTTGTCTGTGCA
GGTCTGCTGTTGTTCTCTGCTCGCCTTTCACAAGTATTCCGGGTTGGACT
CTCTATGAGCAATGGGTCGATTGGAACTAACTGCCCGTGAGGAGAGACAG
CAAGGCCAGAGACCCTTATATGTGGGATATTTCTAGTGTCATGTCTGCCA
GGTCGTATTCGTTTCTGTGCTCTCTTTTGTTCCTCCCGTCAGAAAACTGC
GGTTCCGCAGTTCTCTGATGTTGTCTGCACCTTCGTTACTTGTTGGCTCC
CCTTATTCAAATCGTCACACTCTCTGCTTGCTTGCTTGTAGATTCAAATC
GAGAAAAAGTCATACGGAGATGTTCGATGACATGAATATTTTCCCCTCTC
TCTCCCGCTTGGCCTGGAAGCGGCGGGGATCGTGGCGTGCGGGTGGCGCA
GGAGCCCGACATTTATGACGTCATCGAAGCCGACAACACGGCGATGGAAC
GGGTCACCAAGTCGAAAGCCCGCGATATCGCCAACTCCACACCGACCCAC
TCGAGCAACCATAGCATTATCGGAAGGGGGATCCTCAAGAGGGGCAAGAG
CAGCAGGCGTCCCGGAAGCGATTCTGTCCGCGCAGGATTCAGCGACGTCA
AGTCCGTTTCCAGGTCAGGATGCGTTTGTCTTGTACTCTGCCATGATTTT
CGATCGCGCTTTTATCCACACAACGGGCCGACCAAAAGACGACACATAAA
TGTCGAAATGGGTGTGCATGCGTATGTATCGGAGATTACGACGACCAGGC
AATAAAATGATAAAGCCGACTGATGGTTGCGGTCCTACTTCTTCAAGGTC
GTATAGTGGTATGAGACTCGATGAGGCGGCATCAGTCTCTGTGGCCATCT
TTCACGGCAGTAGAAGAATGTTATGAATGGGCTGTGCTTTATTTTTCGTG
ATATTTTGATCGTTCTTGTCAAATACAGCCGTTTACAGAGGTCGTATATA
TGCATTGATAACGTTGTGTGCATGTGTACTTCCGGACCTAGGAGTAAACA
CCTCTGCGGGACGTCTGCTCCTGTTCACATACTTCTTTTGTGTCGCATCC
ATGATGTGCATCAGTATGCATAAGGGCGACGCTTTTTGGTGGTCTTGCTC
GGAAAATGCCTCAATACTGCTGCAATATGCTGTTGTACACGGCCTATAGA
AATGAAATGATCCTGTAGGTATGCATGATGAATTGGAAAGGGAAAAGGTG
TGGTAGCATCTTGATTTATTGTTGTAGGGCTGTGTTCCGACCAGGCTGCT
GCCTGCCAACCGTAGACACACGTCAGATGTCCTGCCGGTACACTTGGACA
TTGTACGTACTTGAAGCAGAGGACGGATACATGACAATGTAGGGAGGTTC
TTAGCCGACCCCTGAGTGCTTTCCGCTTCGGACTCTGTATAACCTCTCAG
GATGTGCGATGCTGTGCATACAAAACAGAACGCGTCGGGAAGCACATACG
TTGTCCACAACGTCAATCTTGCTGCCCAGAACATAAATGCTCGTGTACCT
ACACGTACAATAATTCGTCTAGCAAGCACGAAAGCATGTACCGAAGTCGG
CTGTTGTAGCGACTGCTGTTCATGTCTCACAGGCGTCAAAAAGGAGTCGT
GGTCTGTTACAGCCACCTAAGCACAGAATGGGTTGTTTTCCGGGGCGTTC
GTTTTATGTGCTTTTAATAACAGGCCCAGCTCTACCCACCGGTTCGGCAG
TGGCATGTTAGAAATACTCCCACTTTCTGTTTTGTATCATTCCGTTGGAT
TTACTTGTCTGGCAACCCGATCGCGACCAGAGACGAGACGACCGACTGGT
TTCTGGGGCCCTCGTGAATCTTATTCTCTATTTACCCATGGCATTGTCTG
CGCGTTTTGATTTCCTTTGTGCTGGGCAGTGTTTGGTTGGGCGTTCGAAT
GACTTGGATATTGAAATATGTGTTTGTACTCATGAGCGTAAATCGGAATG
CTTTTTACATTATCACAGCTTGCGTTCACATGATGTTACCCATAGGTGGG
TGGGGACGGACGCTCCTGACGCAGGGTTATACAGAAGTAGTTGGATGCAT
AGTCGGCGCTTTTTCTATGGGCGGTCGTTCCGTCGATAGGTATTGTGCAT
TTTTCCTTCGTGTTGTGAGCAACAAACCGTTGGAAGGCGGGTTGCTCCAC
CTGTTGTTGGGGTGTTCTTTATCATAGCCCTCGTTTCTTGTGGTTATTTT
GCGGGCCTGCGTTTTATCTTGTTGGATTGAAGCCTATGCTCTTTCACGCC
ACCATGTCATGTGTTGGTTGTGTTAGGGATGACGTCCGGATGAACGTGTT
ACACGAATCGAAGTACAATGCGGAAGAGGTTGGTTGTGCTATGTTCTACG
TCGTTCGCCTTTCTCGCCCCTCTGATCTCATCTAAAGATTTTCTCCGACC
GATGAGCCTTCCCTCCAACGGTTGCTACTTAACGACCGGGCCACTGGGAT
ACCATTGACTAATGGCGGCAGGTACAGCAGTATGTGGTGATGGCAGGAAC
ATTGAGTAGCACAACGCAAGCACCATAAATTGGACACGATGCGATGCGCG
GCACAACGCAACAGGTTCGACCCTGACGAGCCGCCACGGAGCTACCTCCA
GAGCAGGGAGGAGAGCATGCTCGGAGAGGGATCAGTGGCGGCGTCTCCAG
GC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13458:1147..4598-

>mRNA_Ecto-sp13_S_contig13458.2755.1 ID=mRNA_Ecto-sp13_S_contig13458.2755.1|Name=mRNA_Ecto-sp13_S_contig13458.2755.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=585bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13458:1147..4598- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCTCAAGGCGGCTGATGACCCGAGCCTCACGGAGGAAGGGGCATG
GGTTCCGGGTTCCCCGCTCCCAGCGGCGCCCGTGCAGATGATCGACGTAC
CGCAGCGCGCGCAGACAATGCTCGACGACGGGATGCAAGTCAGGAGCAGC
GCCGCTCCCAGCGAGAACGGGGGGGGGGCGCCCGCGTCGTTGGCTATGTT
TAGCACCGCGGGGGGCATCTCAAACGTGTCGGTCCCACGCGATGGATCTG
TCAGCGGCGGGGATCGTGGCGTGCGGGTGGCGCAGGAGCCCGACATTTAT
GACGTCATCGAAGCCGACAACACGGCGATGGAACGGGTCACCAAGTCGAA
AGCCCGCGATATCGCCAACTCCACACCGACCCACTCGAGCAACCATAGCA
TTATCGGAAGGGGGATCCTCAAGAGGGGCAAGAGCAGCAGGCGTCCCGGA
AGCGATTCTGTCCGCGCAGGATTCAGCGACGTCAAGTCCGTTTCCAGGTT
CGACCCTGACGAGCCGCCACGGAGCTACCTCCAGAGCAGGGAGGAGAGCA
TGCTCGGAGAGGGATCAGTGGCGGCGTCTCCAGGC
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